IVF0012372 (gene) Melon (IVF77) v1

Overview
NameIVF0012372
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposase
Locationchr06: 23908937 .. 23909206 (-)
RNA-Seq ExpressionIVF0012372
SyntenyIVF0012372
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGAAAGTGGAGGGTGAAGCCAAAACGGCTCAGCTGTGTGCGGTTGGGTAGGCGACACGTCAACCAACAGAGATGCTTGCTAACGACACCGAGCGACAACCGTGACGGCGAGTCAGCGATCGATGACTTACGGCAGGGTGCTAACGGAGATGCGGTAGCTGAGAGAACGATGGAGGTGACGGGCTGCTTACGAAGGTGGGGCGACTGCGAACGGATCGGCTACGACGGGCGAGTCGAACGTCGGCGACGGTTAAGGAGAGATTAA

mRNA sequence

ATGGCTCGAAAGTGGAGGGTGAAGCCAAAACGGCTCAGCTGTGTGCGGTTGGGTAGGCGACACGTCAACCAACAGAGATGCTTGCTAACGACACCGAGCGACAACCGTGACGGCGAGTCAGCGATCGATGACTTACGGCAGGGTGCTAACGGAGATGCGGTAGCTGAGAGAACGATGGAGGTGACGGGCTGCTTACGAAGGTGGGGCGACTGCGAACGGATCGGCTACGACGGGCGAGTCGAACGTCGGCGACGGTTAAGGAGAGATTAA

Coding sequence (CDS)

ATGGCTCGAAAGTGGAGGGTGAAGCCAAAACGGCTCAGCTGTGTGCGGTTGGGTAGGCGACACGTCAACCAACAGAGATGCTTGCTAACGACACCGAGCGACAACCGTGACGGCGAGTCAGCGATCGATGACTTACGGCAGGGTGCTAACGGAGATGCGGTAGCTGAGAGAACGATGGAGGTGACGGGCTGCTTACGAAGGTGGGGCGACTGCGAACGGATCGGCTACGACGGGCGAGTCGAACGTCGGCGACGGTTAAGGAGAGATTAA

Protein sequence

MARKWRVKPKRLSCVRLGRRHVNQQRCLLTTPSDNRDGESAIDDLRQGANGDAVAERTMEVTGCLRRWGDCERIGYDGRVERRRRLRRD
Homology
[Close]
BLAST of IVF0012372 vs. ExPASy TrEMBL
Match: A0A5D3DKL5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00810 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.9e-17
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 11  RLSCVRLGRRHVNQQRCLLTTPSDNRDGESAIDDLRQGANGDAVAERTMEVTGCLRRWGD 70
           RL  +RLGRR ++ +R LLTTPSD+RD ES IDDLR GA+GDA A   +EVTGCLRRWGD
Sbjct: 538 RLGSMRLGRRRIDWRRHLLTTPSDDRDSESVIDDLRWGADGDATAGEMIEVTGCLRRWGD 597

Query: 71  CERIGY 77
           CERI Y
Sbjct: 598 CERIDY 603

[Close]
BLAST of IVF0012372 vs. ExPASy TrEMBL
Match: A0A5A7U451 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001990 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-16
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0 

Query: 11  RLSCVRLGRRHVNQQRCLLTTPSDNRDGESAIDDLRQGANGDAVAERTMEVTGCLRRWGD 70
           RL  +RLGRR ++ +R LLTTPSD+RD ES IDDLR GA+GDA A   +EVTGCLRRWGD
Sbjct: 538 RLGSMRLGRRRIDWRRHLLTTPSDDRDSESVIDDLRWGADGDATAGEMIEVTGCLRRWGD 597

Query: 71  CERI 75
           CERI
Sbjct: 598 CERI 601

[Close]
BLAST of IVF0012372 vs. NCBI nr
Match: TYK23900.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 2.12e-20
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 11  RLSCVRLGRRHVNQQRCLLTTPSDNRDGESAIDDLRQGANGDAVAERTMEVTGCLRRWGD 70
           RL  +RLGRR ++ +R LLTTPSD+RD ES IDDLR GA+GDA A   +EVTGCLRRWGD
Sbjct: 538 RLGSMRLGRRRIDWRRHLLTTPSDDRDSESVIDDLRWGADGDATAGEMIEVTGCLRRWGD 597

Query: 71  CERIGY 76
           CERI Y
Sbjct: 598 CERIDY 603

[Close]
BLAST of IVF0012372 vs. NCBI nr
Match: KAA0050014.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.88e-19
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0 

Query: 11  RLSCVRLGRRHVNQQRCLLTTPSDNRDGESAIDDLRQGANGDAVAERTMEVTGCLRRWGD 70
           RL  +RLGRR ++ +R LLTTPSD+RD ES IDDLR GA+GDA A   +EVTGCLRRWGD
Sbjct: 538 RLGSMRLGRRRIDWRRHLLTTPSDDRDSESVIDDLRWGADGDATAGEMIEVTGCLRRWGD 597

Query: 71  CERI 74
           CERI
Sbjct: 598 CERI 601

The following BLAST results are available for this feature:
BLAST of IVF0012372 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0012372 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DKL56.9e-1769.70Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00810 PE... [more]
A0A5A7U4513.4e-1670.31Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001990 PE... [more]
BLAST of IVF0012372 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23900.12.12e-2069.70transposase [Cucumis melo var. makuwa][more]
KAA0050014.11.88e-1970.31transposase [Cucumis melo var. makuwa][more]
BLAST of IVF0012372 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012372.1IVF0012372.1mRNA