IVF0012367 (gene) Melon (IVF77) v1

Overview
NameIVF0012367
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr03: 710276 .. 710740 (-)
RNA-Seq ExpressionIVF0012367
SyntenyIVF0012367
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTCTCATCCATCAGAAGTGAATCATATGATATCATCTTCAGTAAGGTAGTATCAGCAGTATATAGGTACAGAGTTGAATTGGTTGTTGAGAATAGGATCAGAAGGTAAAGGGGGCATATATATGAATATTGTCTTAATTGAATTGAATTCCGATCAAAACCGAATGCGAAAAAGGAACAGTTAAGTAAGTCCAATAAAGAGAAGGTGGTACGTTATACAAAACGAAACAAGGATTCGAGCAGAAGCAATTTATTAAAAGAAATGCAGACAGATTATGGAGATGAAGTTGGAAGAAATTGTACCTGAAATTTGAGGGCTTGAAAGTGAATAGCTTATTTAGAGTTTGGATTGTGAGGCGGAGGTTGAAGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCGAACCACAGAGTAGCTCACACTACGACACCAATCTTCTTGTCCTTTGCTTGTAGCCTAA

mRNA sequence

ATGTCTTTCTCATCCATCAGAAGTGAATCATATGATATCATCTTCAGTAAGGTAGTATCAGCAGTATATAGTTGGAAGAAATTGTACCTGAAATTTGAGGGCTTGAAAGTGAATAGCTTATTTAGAGTTTGGATTCTCACACTACGACACCAATCTTCTTGTCCTTTGCTTGTAGCCTAA

Coding sequence (CDS)

ATGTCTTTCTCATCCATCAGAAGTGAATCATATGATATCATCTTCAGTAAGGTAGTATCAGCAGTATATAGTTGGAAGAAATTGTACCTGAAATTTGAGGGCTTGAAAGTGAATAGCTTATTTAGAGTTTGGATTCTCACACTACGACACCAATCTTCTTGTCCTTTGCTTGTAGCCTAA

Protein sequence

MSFSSIRSESYDIIFSKVVSAVYSWKKLYLKFEGLKVNSLFRVWILTLRHQSSCPLLVA
Homology
[Close]
BLAST of IVF0012367 vs. ExPASy TrEMBL
Match: A0A0A0LSV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402100 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 48/80 (60.00%), Postives = 54/80 (67.50%), Query Frame = 0 

Query: 1  MSFSSIRSESYDIIFSKVVSAVY------SWKKLYLKFEGLKVNSLFRVWIL-------- 60
          MSFS+IRSESYDIIF+KVVSAVY        ++LYLK EGL+VNSLFRV I+        
Sbjct: 1  MSFSTIRSESYDIIFNKVVSAVYRQIMEMKLEELYLKLEGLEVNSLFRVEIVGRRLKKKK 60

[Close]
BLAST of IVF0012367 vs. NCBI nr
Match: KGN63101.1 (hypothetical protein Csa_022498 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.54e-15
Identity = 48/80 (60.00%), Postives = 54/80 (67.50%), Query Frame = 0 

Query: 1  MSFSSIRSESYDIIFSKVVSAVY------SWKKLYLKFEGLKVNSLFRVWIL-------- 59
          MSFS+IRSESYDIIF+KVVSAVY        ++LYLK EGL+VNSLFRV I+        
Sbjct: 1  MSFSTIRSESYDIIFNKVVSAVYRQIMEMKLEELYLKLEGLEVNSLFRVEIVGRRLKKKK 60

The following BLAST results are available for this feature:
BLAST of IVF0012367 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0012367 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSV91.9e-1060.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402100 PE=4 SV=1[more]
BLAST of IVF0012367 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63101.11.54e-1560.00hypothetical protein Csa_022498 [Cucumis sativus][more]
BLAST of IVF0012367 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012367.1IVF0012367.1mRNA