IVF0012324 (gene) Melon (IVF77) v1

Overview


Name	IVF0012324
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr01: 21807181 .. 21807392 (-)
RNA-Seq Expression	IVF0012324
Synteny	IVF0012324

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCATGTTGAAGGGAATATGGAAGAACAATTGCTTGATAGTTTGGCTCAAAGATTAATTCGGGGATTAGATCGGCACAATCAAACCATGAAAAGAAGTATGGGATTGAGAGATTGAAAGCCTTGGGTGCTACTACTTTTGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGA

mRNA sequence

ATGGAAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCATGTTGAAGGGAATATGGAAGAACAATTATCGGCACAATCAAACCATGAAAAGAAGTATGGGATTGAGAGATTGAAAGCCTTGGGTGCTACTACTTTTGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGA

Coding sequence (CDS)

ATGGAAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCATGTTGAAGGGAATATGGAAGAACAATTATCGGCACAATCAAACCATGAAAAGAAGTATGGGATTGAGAGATTGAAAGCCTTGGGTGCTACTACTTTTGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGA

Protein sequence

MESGESDAESSRPHVEGNMEEQLSAQSNHEKKYGIERLKALGATTFAGTTNPADAEA

Homology

[Close]

BLAST of IVF0012324 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 53/70 (75.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 1   MESGESDAESSRPHVEGNMEEQL-------------SAQSNHEKKYGIERLKALGATTFA 58
           M SGESDAESSRPHVEGNMEEQL             SAQS+ EKKYGIERLKALGATTF 
Sbjct: 42  MGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFV 101

[Close]

BLAST of IVF0012324 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 49/69 (71.01%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MESGESDAESSRPHVEGNMEEQL-------------SAQSNHEKKYGIERLKALGATTFA 57
          M SGESDAESSRPHVEGN+EEQL              AQS+ EKKYGIERLKALGATTF 
Sbjct: 23 MGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFV 82

[Close]

BLAST of IVF0012324 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-12
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1  MESGESDAESSRPHVEGNMEEQL-------------SAQSNHEKKYGIERLKALGATTFA 58
          M SGESDAESSRP VE N+EEQL             SAQS+ EKKYG ERLKALGATTFA
Sbjct: 23 MGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFA 82

[Close]

BLAST of IVF0012324 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-12
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1  MESGESDAESSRPHVEGNMEEQL-------------SAQSNHEKKYGIERLKALGATTFA 58
          M SGESDAESSRP VE N+EEQL             SAQS+ EKKYG ERLKALGATTFA
Sbjct: 23 MGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFA 82

[Close]

BLAST of IVF0012324 vs. ExPASy TrEMBL
Match: A0A5A7ULX5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006310 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.1e-11
Identity = 46/70 (65.71%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1  MESGESDAESSRPHVEGNMEEQL-------------SAQSNHEKKYGIERLKALGATTFA 58
          MES E DAESSRPHVEGN+EEQL             S QS+ EKK+ IERLKALG+TTFA
Sbjct: 23 MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82

[Close]

BLAST of IVF0012324 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 5.08e-20
Identity = 53/70 (75.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 1   MESGESDAESSRPHVEGNMEEQL-------------SAQSNHEKKYGIERLKALGATTFA 57
           M SGESDAESSRPHVEGNMEEQL             SAQS+ EKKYGIERLKALGATTF 
Sbjct: 42  MGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFV 101

[Close]

BLAST of IVF0012324 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 7.41e-18
Identity = 49/69 (71.01%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1  MESGESDAESSRPHVEGNMEEQLS-------------AQSNHEKKYGIERLKALGATTFA 56
          M SGESDAESSRPHVEGN+EEQL              AQS+ EKKYGIERLKALGATTF 
Sbjct: 23 MGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFV 82

[Close]

BLAST of IVF0012324 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 3.13e-16
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1  MESGESDAESSRPHVEGNMEEQL-------------SAQSNHEKKYGIERLKALGATTFA 57
          M SGESDAESSRP VE N+EEQL             SAQS+ EKKYG ERLKALGATTFA
Sbjct: 23 MGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFA 82

[Close]

BLAST of IVF0012324 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 3.13e-16
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1  MESGESDAESSRPHVEGNMEEQL-------------SAQSNHEKKYGIERLKALGATTFA 57
          M SGESDAESSRP VE N+EEQL             SAQS+ EKKYG ERLKALGATTFA
Sbjct: 23 MGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSAQSDPEKKYGFERLKALGATTFA 82

[Close]

BLAST of IVF0012324 vs. NCBI nr
Match: KAA0056913.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 7.65e-15
Identity = 46/70 (65.71%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1  MESGESDAESSRPHVEGNMEEQL-------------SAQSNHEKKYGIERLKALGATTFA 57
          MES E DAESSRPHVEGN+EEQL             S QS+ EKK+ IERLKALG+TTFA
Sbjct: 23 MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82

The following BLAST results are available for this feature:

BLAST of IVF0012324 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012324 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DES5	2.4e-15	75.71	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SJ99	1.7e-13	71.01	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BB91	4.3e-12	68.57	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1M0	4.3e-12	68.57	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5A7ULX5	8.1e-11	65.71	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0012324 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035225.1	5.08e-20	75.71	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
KAA0026280.1	7.41e-18	71.01	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D...	[more]
KAA0036813.1	3.13e-16	68.57	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	3.13e-16	68.57	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0056913.1	7.65e-15	65.71	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 D...	[more]

BLAST of IVF0012324 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012324.1	IVF0012324.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity