IVF0012318 (gene) Melon (IVF77) v1

Overview
NameIVF0012318
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr08: 2090780 .. 2091139 (-)
RNA-Seq ExpressionIVF0012318
SyntenyIVF0012318
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTAAGTCCACCTCATTTAGCCTTTCGGAGCATCCAACACTTCAACACCAACAAAAAAAAAAAAAAAAAAAAAAAAATCTTCTACTTCTTCTTAAACTGATATCTCTAGAAGATGGGTGAAGAAGCTAAGATGATGAACAACATCAACGGTCAGAGATTGGGAAGGAGAATTTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCTATCTTCTCTAACAGTCACAGTACTCAACAACAACATTGAACATTTAGATAGACACAAACGTACATAGCTTCTATGTAATTTTGAGGTTGAAGAGATTAAGGTTGTAAATTTG

mRNA sequence

ATTTAAGTCCACCTCATTTAGCCTTTCGGAGCATCCAACACTTCAACACCAACAAAAAAAAAAAAAAAAAAAAAAAAATCTTCTACTTCTTCTTAAACTGATATCTCTAGAAGATGGGTGAAGAAGCTAAGATGATGAACAACATCAACGGTCAGAGATTGGGAAGGAGAATTTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCTATCTTCTCTAACAGTCACAGTACTCAACAACAACATTGAACATTTAGATAGACACAAACGTACATAGCTTCTATGTAATTTTGAGGTTGAAGAGATTAAGGTTGTAAATTTG

Coding sequence (CDS)

ATGGGTGAAGAAGCTAAGATGATGAACAACATCAACGGTCAGAGATTGGGAAGGAGAATTTCTGGGCGTTTGATCCCAAAGAGAGGGCAAGTGAAGATGGGAATCATGGTGGGGTTGGCTCAAACTGTCACTTCTATCTTCTCTAACAGTCACAGTACTCAACAACAACATTGA

Protein sequence

MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH
Homology
BLAST of IVF0012318 vs. ExPASy TrEMBL
Match: A0A5A7UDZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007170 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.6e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 58
          MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH
Sbjct: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 57

BLAST of IVF0012318 vs. ExPASy TrEMBL
Match: B9S603 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1062910 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-06
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 8  MNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQ 56
          M  ++ +++ RR+SGR IPKRGQVK+GI+VGLA +V SIFS+SHS+++
Sbjct: 6  MGMMSDRKVSRRLSGRPIPKRGQVKVGIVVGLAHSVASIFSHSHSSRR 53

BLAST of IVF0012318 vs. ExPASy TrEMBL
Match: A0A2H5N387 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_011210 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 11 INGQRLGRRI-----SGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQ 55
          ING  + RR+     SGR IPKRGQVKM I+VGLA +V SIFS+SHS +
Sbjct: 9  INGGNISRRLTAGGGSGRPIPKRGQVKMAILVGLAHSVASIFSHSHSNR 57

BLAST of IVF0012318 vs. ExPASy TrEMBL
Match: K7L2M4 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G191400 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 5  AKMMNNINGQR-LGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQ 55
          A+    ING R   RR SGR IPKRGQVK+GI+VGLA +V SIFS S +T+
Sbjct: 4  ARASGMINGGRSFPRRFSGRPIPKRGQVKVGIVVGLANSVASIFSRSRATR 54

BLAST of IVF0012318 vs. ExPASy TrEMBL
Match: A0A445JYT4 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 GN=D0Y65_018344 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 5   AKMMNNINGQR-LGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQ 55
           A+    ING R   RR SGR IPKRGQVK+GI+VGLA +V SIFS S +T+
Sbjct: 398 ARASGMINGGRSFPRRFSGRPIPKRGQVKVGIVVGLANSVASIFSRSRATR 448

BLAST of IVF0012318 vs. NCBI nr
Match: KAA0052717.1 (hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa] >TYK13107.1 hypothetical protein E5676_scaffold255G007170 [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 3.65e-32
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 57
          MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH
Sbjct: 1  MGEEAKMMNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 57

BLAST of IVF0012318 vs. NCBI nr
Match: KAG7026593.1 (Anaphase-promoting complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.2 bits (178), Expect = 5.18e-15
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 8  MNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQQH 57
          MNNING+R+ RRI GR IPKRGQVKMGIMVG+  TVTSIFS+ H     H
Sbjct: 1  MNNINGERICRRIGGRPIPKRGQVKMGIMVGIVHTVTSIFSHGHGHGHGH 50

BLAST of IVF0012318 vs. NCBI nr
Match: EEF40912.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 61.2 bits (147), Expect = 9.59e-11
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 8  MNNINGQRLGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQQ 55
          M  ++ +++ RR+SGR IPKRGQVK+GI+VGLA +V SIFS+SHS+++
Sbjct: 6  MGMMSDRKVSRRLSGRPIPKRGQVKVGIVVGLAHSVASIFSHSHSSRR 53

BLAST of IVF0012318 vs. NCBI nr
Match: GAY34397.1 (hypothetical protein CUMW_011210 [Citrus unshiu])

HSP 1 Score: 57.0 bits (136), Expect = 5.01e-09
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 11 INGQRLGRRI-----SGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQ 54
          ING  + RR+     SGR IPKRGQVKM I+VGLA +V SIFS+SHS +
Sbjct: 9  INGGNISRRLTAGGGSGRPIPKRGQVKMAILVGLAHSVASIFSHSHSNR 57

BLAST of IVF0012318 vs. NCBI nr
Match: KAG5010543.1 (hypothetical protein JHK87_019058 [Glycine soja] >KAG5023291.1 hypothetical protein JHK85_019633 [Glycine max] >KAG5038373.1 hypothetical protein JHK86_019213 [Glycine max] >KAG5143499.1 hypothetical protein JHK82_019194 [Glycine max] >KHN07308.1 hypothetical protein glysoja_027398 [Glycine soja])

HSP 1 Score: 56.6 bits (135), Expect = 6.78e-09
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 5  AKMMNNINGQR-LGRRISGRLIPKRGQVKMGIMVGLAQTVTSIFSNSHSTQ 54
          A+    ING R   RR SGR IPKRGQVK+GI+VGLA +V SIFS S +T+
Sbjct: 4  ARASGMINGGRSFPRRFSGRPIPKRGQVKVGIVVGLANSVASIFSRSRATR 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UDZ44.6e-22100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
B9S6037.9e-0658.33Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1062910 PE=4 SV=1[more]
A0A2H5N3871.1e-0461.22Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_011210 PE=4 SV=1[more]
K7L2M41.5e-0460.78Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G191400 PE=4 SV=1[more]
A0A445JYT41.5e-0460.78Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 G... [more]
Match NameE-valueIdentityDescription
KAA0052717.13.65e-32100.00hypothetical protein E6C27_scaffold120G003300 [Cucumis melo var. makuwa] >TYK131... [more]
KAG7026593.15.18e-1570.00Anaphase-promoting complex subunit 4, partial [Cucurbita argyrosperma subsp. arg... [more]
EEF40912.19.59e-1158.33conserved hypothetical protein [Ricinus communis][more]
GAY34397.15.01e-0961.22hypothetical protein CUMW_011210 [Citrus unshiu][more]
KAG5010543.16.78e-0960.78hypothetical protein JHK87_019058 [Glycine soja] >KAG5023291.1 hypothetical prot... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36615PROTEIN, PUTATIVE-RELATEDcoord: 8..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012318.1IVF0012318.1mRNA