IVF0012294 (gene) Melon (IVF77) v1

Overview
NameIVF0012294
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionserine/threonine-protein phosphatase 7 long form homolog
Locationchr08: 14842536 .. 14842694 (-)
RNA-Seq ExpressionIVF0012294
SyntenyIVF0012294
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATGTGGGGAGTGCAGGATCACCCTGCAGGATGTTGCAGTGCAGTTGGGGTTGCTAGTGGATGGGGAGCCTCTGACAGGATCATTAAGGTATAATTGGATGCTTATCTGCAATGATTACTTGGGAGTTGTACCGCCTGACATGAAAGGTCAATGA

mRNA sequence

ATGCCATGTGGGGAGTGCAGGATCACCCTGCAGGATGTTGCAGTGCAGTTGGGGTTGCTAGTGGATGGGGAGCCTCTGACAGGATCATTAAGGTATAATTGGATGCTTATCTGCAATGATTACTTGGGAGTTGTACCGCCTGACATGAAAGGTCAATGA

Coding sequence (CDS)

ATGCCATGTGGGGAGTGCAGGATCACCCTGCAGGATGTTGCAGTGCAGTTGGGGTTGCTAGTGGATGGGGAGCCTCTGACAGGATCATTAAGGTATAATTGGATGCTTATCTGCAATGATTACTTGGGAGTTGTACCGCCTGACATGAAAGGTCAATGA

Protein sequence

MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Homology
BLAST of IVF0012294 vs. ExPASy Swiss-Prot
Match: Q9LNG5 (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-08
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVP 47
           +P GE  +TLQDV + LGL VDG  +TGS +YNW  +C D LG  P
Sbjct: 101 LPAGEITVTLQDVNILLGLRVDGPAVTGSTKYNWADLCEDLLGHRP 146

BLAST of IVF0012294 vs. ExPASy TrEMBL
Match: A0A5A7TSW1 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00240 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 53
           MPCGEC ITLQDVAVQLGL VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 91  MPCGECTITLQDVAVQLGLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 142

BLAST of IVF0012294 vs. ExPASy TrEMBL
Match: A0A5D3BUF5 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001440 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 53
           MPCGEC ITLQDVAVQLGL VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 173 MPCGECTITLQDVAVQLGLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 224

BLAST of IVF0012294 vs. ExPASy TrEMBL
Match: A0A5A7SNK7 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00830 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 53
           MPCGEC ITLQDVAVQLGL VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 289 MPCGECTITLQDVAVQLGLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 340

BLAST of IVF0012294 vs. ExPASy TrEMBL
Match: A0A5D3DNL9 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003100 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 53
           MPCGEC ITLQDVAVQLGL VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 139 MPCGECTITLQDVAVQLGLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 190

BLAST of IVF0012294 vs. ExPASy TrEMBL
Match: A0A5A7TI34 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00540 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.3e-22
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 53
           MPCGEC ITLQDV VQLGL VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 526 MPCGECTITLQDVVVQLGLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 577

BLAST of IVF0012294 vs. NCBI nr
Match: KAA0044309.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa] >TYK02544.1 serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 1.10e-27
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 52
           MPCGEC ITLQDVAVQLGL VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 91  MPCGECTITLQDVAVQLGLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 142

BLAST of IVF0012294 vs. NCBI nr
Match: TYK03303.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa] >TYK12342.1 serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 1.65e-27
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 52
           MPCGEC ITLQDVAVQLGL VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 173 MPCGECTITLQDVAVQLGLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 224

BLAST of IVF0012294 vs. NCBI nr
Match: TYK25184.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 1.87e-27
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 52
           MPCGEC ITLQDVAVQLGL VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 139 MPCGECTITLQDVAVQLGLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 190

BLAST of IVF0012294 vs. NCBI nr
Match: KAA0031833.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 1.90e-27
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 52
           MPCGEC ITLQDVAVQLGL VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 289 MPCGECTITLQDVAVQLGLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 340

BLAST of IVF0012294 vs. NCBI nr
Match: XP_008467081.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog, partial [Cucumis melo])

HSP 1 Score: 108 bits (270), Expect = 4.91e-27
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 52
           MPCG+C ITLQDVAVQL L VDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ
Sbjct: 91  MPCGKCTITLQDVAVQLRLPVDGEPLTGSLRYNWMLICNDYLGVVPPDMKGQ 142

BLAST of IVF0012294 vs. TAIR 10
Match: AT1G48120.1 (hydrolases;protein serine/threonine phosphatases )

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-09
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVP 47
           +P GE  +TLQDV + LGL VDG  +TGS +YNW  +C D LG  P
Sbjct: 101 LPAGEITVTLQDVNILLGLRVDGPAVTGSTKYNWADLCEDLLGHRP 146

BLAST of IVF0012294 vs. TAIR 10
Match: AT2G04865.1 (Aminotransferase-like, plant mobile domain family protein )

HSP 1 Score: 43.1 bits (100), Expect = 7.8e-05
Identity = 18/43 (41.86%), Postives = 26/43 (60.47%), Query Frame = 0

Query: 4   GECRITLQDVAVQLGLLVDGEPLTGSLRYNWMLICNDYLGVVP 47
           GE  +TL+D+A+ LGL +DG+P+ G        +C  YLG  P
Sbjct: 97  GEMTVTLEDIALLLGLGIDGKPVIGLTYTTCSAVCERYLGKSP 139

BLAST of IVF0012294 vs. TAIR 10
Match: AT2G25010.1 (Aminotransferase-like, plant mobile domain family protein )

HSP 1 Score: 40.8 bits (94), Expect = 3.9e-04
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 0

Query: 1   MPCGECRITLQDVAVQLGLLVDGEPLTGSLRYN--WMLICNDYLGVVP 47
           +P GE  ITL +VA+ LGL +DG+P+ GS   +   M +C   LG +P
Sbjct: 92  LPLGEMTITLDEVALVLGLEIDGDPIVGSKVGDEVAMDMCGRLLGKLP 139

BLAST of IVF0012294 vs. TAIR 10
Match: AT1G17930.1 (Aminotransferase-like, plant mobile domain family protein )

HSP 1 Score: 39.7 bits (91), Expect = 8.7e-04
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 0

Query: 2   PCGECRITLQDVAVQLGLLVDGEPLTG 29
           PCGE  ITL +V++ LGL VDG+P+ G
Sbjct: 84  PCGEMTITLDEVSLILGLAVDGKPVVG 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LNG52.5e-0854.35Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana... [more]
Match NameE-valueIdentityDescription
A0A5A7TSW13.2e-2296.15Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5D3BUF53.2e-2296.15Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5A7SNK73.2e-2296.15Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5D3DNL93.2e-2296.15Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5A7TI349.3e-2294.23Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
Match NameE-valueIdentityDescription
KAA0044309.11.10e-2796.15serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
TYK03303.11.65e-2796.15serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
TYK25184.11.87e-2796.15serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
KAA0031833.11.90e-2796.15serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
XP_008467081.14.91e-2792.31PREDICTED: serine/threonine-protein phosphatase 7 long form homolog, partial [Cu... [more]
Match NameE-valueIdentityDescription
AT1G48120.11.8e-0954.35hydrolases;protein serine/threonine phosphatases [more]
AT2G04865.17.8e-0541.86Aminotransferase-like, plant mobile domain family protein [more]
AT2G25010.13.9e-0443.75Aminotransferase-like, plant mobile domain family protein [more]
AT1G17930.18.7e-0459.26Aminotransferase-like, plant mobile domain family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012294.1IVF0012294.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance