IVF0012245 (gene) Melon (IVF77) v1

Overview


Name	IVF0012245
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Geranylgeranyl transferase type-2 subunit beta
Location	chr01: 2769438 .. 2770816 (-)
RNA-Seq Expression	IVF0012245
Synteny	IVF0012245

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTGAGAGAAGAAAAGGAAGAGGGAAAAGGAAAATTAAGAGTAATTTTGGCCAATGACGATGAAATCAAGAGGACAAAATTCTTAAGTTTCAAAAAGTTGAGCAAAACCCATTTTGGAGTTTGGGATTGGGTCTGTTATACAAATTTATTGTATCCGTTCATTCATACTCTTAGATTGTAGATTGCTATCCATTTATTACATGTATGTATCCCATCTTAGGTCGTTTACTTTTATGCACAGAGAAAGGATGATTTTCAATCTGTGATGATGGAATATGTTAGAACGAATGGTCCATACTGGGGGTTACCACATTGGATATATTGGAAAGCTAGATATTGTGGATGTTGATGTAGTCGTTTCCTGGGTCTTGAAATGTTAGCACGAGTCAGGTCTATAACATTCTCTACTGTCTCAACTTGTATGTCTTTTAGTCTACGTTAATGTGGATACATTTTATGGAATTGATGTATATGTTCAGTGTTGTGCCATTAGTATTGCACAACATACACATCAAACTATTCAATCTTCTGGCTTCTTTTTGTGTTCATACAAATTTATTACGGAGTCAAGTTGAAGAAAATTTCCTTTTATGCATGTTTGAGGATTTAGATGTGAACGTTGGATCATTTATAACAAAAGCAGAGAAGTGATTCCTGATATTTCAGGTGGTTTTTCTGGCAACACTGGTCATGATCAGCACATACTTTACACCCTTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTGTATCCTTTGGCACTTGGGAGTTGATTTTTAATTTATGCCAGTTTATTCTATTAGATCTGTTGTTTTGATTCATTTCACCCATAATTTTCATGAATTTTTAGGGAACAGTGACCTTTTTAATACGCTGAGTGGACAATTGATTACCACTACCCAACTACTTATTTCTAAATATTTCAGACATCCTCTATGTGTCGTCTACTTTTAGAGATTTCATATGCACCTGCTATTGAAAGTTGGTAATTGAGTTGAGTGTTAACTATATGTAAAAATTTATGTGAGGCTTAATCTTGTGGTAGATATTGTTGGTTTGCAAAATGAAGATGGTTCCTTCTCAAGAGACGTTTGGGATGAAGTAGATTCAAGGTAGTCTACTCATTTATTTGTTTATTTTTATTATTATTTTGGATTTCATGCTTCATGTGATCCTACATGCGTGATAATTTTTTAAAAACTGAATTTGTTTATCTTGTAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGAGAAGGCTTTCGAACTACATTCTTAG

mRNA sequence

ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTGAGAGAAGAAAAGGAAGAGGGAAAAGGAAAATTAAGAGTAATTTTGGCCAATGACGATGAAATCAAGAGGACAAAATTCTTAAGTTTCAAAAAGTTGAGCAAAACCCATTTTGGAGTTTGGGATTGGGTCTGTGGTTTTTCTGGCAACACTGGTCATGATCAGCACATACTTTACACCCTTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTATATTGTTGGTTTGCAAAATGAAGATGGTTCCTTCTCAAGAGACGTTTGGGATGAAGTAGATTCAAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGAGAAGGCTTTCGAACTACATTCTTAG

Coding sequence (CDS)

ATGGAGAATGACCGATATCAAATGGAGGAAGGAAAATTGAGAGAAGAAAAGGAAGAGGGAAAAGGAAAATTAAGAGTAATTTTGGCCAATGACGATGAAATCAAGAGGACAAAATTCTTAAGTTTCAAAAAGTTGAGCAAAACCCATTTTGGAGTTTGGGATTGGGTCTGTGGTTTTTCTGGCAACACTGGTCATGATCAGCACATACTTTACACCCTTAGTGCCGTACAAGTCTTGGCCCTCTTTGACAAGTTGAATGTTTTAGATGTTGATAAGGTGACAGATTATATTGTTGGTTTGCAAAATGAAGATGGTTCCTTCTCAAGAGACGTTTGGGATGAAGTAGATTCAAGGTTTTCTTATATTGCAATATCTCATCTATCGTTATTACATCAACTGGAGAAGATCAATGTTGAGAAGGCTTTCGAACTACATTCTTAG

Protein sequence

MENDRYQMEEGKLREEKEEGKGKLRVILANDDEIKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFELHS

Homology

[Close]

BLAST of IVF0012245 vs. ExPASy Swiss-Prot
Match: Q9LHL5 (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702 GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-31
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+
Sbjct: 73  GFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDT 132

Query: 118 RFSYIAISHLSLLHQLEKINVEKAFE 144
           RFSYIAI  LS+L  L+KINV+KA +
Sbjct: 133 RFSYIAICCLSILKCLDKINVKKAVD 158

[Close]

BLAST of IVF0012245 vs. ExPASy Swiss-Prot
Match: Q84J75 (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702 GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+
Sbjct: 78  GFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDT 137

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+L  L+KINVEKA
Sbjct: 138 RFSYIAICCLSILKCLDKINVEKA 161

[Close]

BLAST of IVF0012245 vs. ExPASy Swiss-Prot
Match: P53611 (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGTB PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-25
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 34  IKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKV 93
           + R + L+F K  +   G      G S + GHD H+LYTLSAVQ+L L+D +NV+DV+KV
Sbjct: 66  MNREEILAFIKSCQHECG------GISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKV 125

Query: 94  TDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE 144
            +Y+ GLQ EDGSF+ D+W E+D+RFS+ A++ L+LL +L+ INVEKA E
Sbjct: 126 VEYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIE 169

[Close]

BLAST of IVF0012245 vs. ExPASy Swiss-Prot
Match: Q5E9B3 (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 54/110 (49.09%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 34  IKRTKFLSFKKLSKTHFGVWDWVCGFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKV 93
           + R + L+F K  +   G      G S + GHD H+LYTLSAVQ+L L+D +NV+D++KV
Sbjct: 66  MNREEILTFIKSCQHECG------GISASIGHDPHLLYTLSAVQILTLYDSINVIDINKV 125

Query: 94  TDYIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE 144
            +Y+  LQ EDGSF+ D+W E+D+RFS+ A++ L+LL +L+ INVEKA E
Sbjct: 126 VEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIE 169

[Close]

BLAST of IVF0012245 vs. ExPASy Swiss-Prot
Match: B0G172 (Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum OX=44689 GN=rabggtb PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-24
Identity = 59/108 (54.63%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 41  SFKKLSKTHFGVWDWVC-----GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTD 100
           S  KL K     W   C     GF GNT HD H+L TLSAVQ+L  +D L+ +D++ V D
Sbjct: 66  SLDKLDKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVD 125

Query: 101 YIVGLQNEDGSFSRDVWDEVDSRFSYIAISHLSLLHQLEKINVEKAFE 144
           Y+V LQ EDGSF  D W EVD+RFSY AI  LSLL  L+KIN EKA E
Sbjct: 126 YVVKLQREDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVE 173

[Close]

BLAST of IVF0012245 vs. ExPASy TrEMBL
Match: A0A6J1JME6 (Geranylgeranyl transferase type-2 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111488198 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVTDY+VGLQNEDGSFS D+W EVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTDYVVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LSLLHQL+KINVEKA
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKA 153

[Close]

BLAST of IVF0012245 vs. ExPASy TrEMBL
Match: A0A6J1C294 (Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN=LOC111007801 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GFSGN GHD HILYTLSAVQVLALFD+L+VLDVDKVT+YI GLQNEDGSFS D+W EVDS
Sbjct: 70  GFSGNIGHDPHILYTLSAVQVLALFDRLSVLDVDKVTNYIAGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAIS LSLLHQLEKINVEKA
Sbjct: 130 RFSYIAISCLSLLHQLEKINVEKA 153

[Close]

BLAST of IVF0012245 vs. ExPASy TrEMBL
Match: A0A6J1GS02 (Geranylgeranyl transferase type-2 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111456483 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GN GHD HILYTLSAVQVLALFD L+VLDVDKVTDY+VGLQNEDGSFS D+W EVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDTLDVLDVDKVTDYVVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAIS LSLLHQL+KINVEKA
Sbjct: 130 RFSYIAISCLSLLHQLDKINVEKA 153

[Close]

BLAST of IVF0012245 vs. ExPASy TrEMBL
Match: A0A0A0K723 (Geranylgeranyl transferase type-2 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_7G433280 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GFSGN GHD HILYTLSAVQVLALFDKL+VLDVDKVT+Y+VGLQNEDGSFS D+W EVDS
Sbjct: 70  GFSGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LSLLHQL+KINVEKA
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKA 153

[Close]

BLAST of IVF0012245 vs. ExPASy TrEMBL
Match: A0A1S3CDW8 (Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo OX=3656 GN=LOC103499776 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.6e-32
Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVT+Y+VGLQNEDGSFS D+W EVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LSLLHQL+KINVEKA
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKA 153

[Close]

BLAST of IVF0012245 vs. NCBI nr
Match: XP_038887310.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida] >XP_038887311.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 149 bits (375), Expect = 3.85e-41
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GFSGN GHD HILYTLSAVQVLALFDKL+V+DVDKVTDYIVGLQNEDGSFS D+W EVDS
Sbjct: 44  GFSGNIGHDPHILYTLSAVQVLALFDKLSVVDVDKVTDYIVGLQNEDGSFSGDIWGEVDS 103

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 141
           RFSYIA+S LSLL+QLEKINVEKA
Sbjct: 104 RFSYIAVSCLSLLNQLEKINVEKA 127

[Close]

BLAST of IVF0012245 vs. NCBI nr
Match: XP_038887307.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887308.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038887309.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 149 bits (375), Expect = 7.30e-41
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GFSGN GHD HILYTLSAVQVLALFDKL+V+DVDKVTDYIVGLQNEDGSFS D+W EVDS
Sbjct: 70  GFSGNIGHDPHILYTLSAVQVLALFDKLSVVDVDKVTDYIVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 141
           RFSYIA+S LSLL+QLEKINVEKA
Sbjct: 130 RFSYIAVSCLSLLNQLEKINVEKA 153

[Close]

BLAST of IVF0012245 vs. NCBI nr
Match: XP_022135990.1 (geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia] >XP_022135991.1 geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia])

HSP 1 Score: 148 bits (374), Expect = 1.03e-40
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GFSGN GHD HILYTLSAVQVLALFD+L+VLDVDKVT+YI GLQNEDGSFS D+W EVDS
Sbjct: 70  GFSGNIGHDPHILYTLSAVQVLALFDRLSVLDVDKVTNYIAGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 141
           RFSYIAIS LSLLHQLEKINVEKA
Sbjct: 130 RFSYIAISCLSLLHQLEKINVEKA 153

[Close]

BLAST of IVF0012245 vs. NCBI nr
Match: XP_022954124.1 (geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita moschata])

HSP 1 Score: 148 bits (374), Expect = 1.11e-40
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GN GHD HILYTLSAVQVLALFD L+VLDVDKVTDY+VGLQNEDGSFS D+W EVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDTLDVLDVDKVTDYVVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 141
           RFSYIAIS LSLLHQL+KINVEKA
Sbjct: 130 RFSYIAISCLSLLHQLDKINVEKA 153

[Close]

BLAST of IVF0012245 vs. NCBI nr
Match: XP_022991640.1 (geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita maxima] >XP_022991641.1 geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita maxima] >XP_022991642.1 geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita maxima])

HSP 1 Score: 148 bits (374), Expect = 1.11e-40
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GN GHD HILYTLSAVQVLALFDKL+VLDVDKVTDY+VGLQNEDGSFS D+W EVDS
Sbjct: 70  GFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTDYVVGLQNEDGSFSGDIWGEVDS 129

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 141
           RFSYIAI  LSLLHQL+KINVEKA
Sbjct: 130 RFSYIAILCLSLLHQLDKINVEKA 153

[Close]

BLAST of IVF0012245 vs. TAIR 10
Match: AT3G12070.1 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-32
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+
Sbjct: 73  GFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDT 132

Query: 118 RFSYIAISHLSLLHQLEKINVEKAFE 144
           RFSYIAI  LS+L  L+KINV+KA +
Sbjct: 133 RFSYIAICCLSILKCLDKINVKKAVD 158

[Close]

BLAST of IVF0012245 vs. TAIR 10
Match: AT3G12070.2 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-32
Identity = 64/86 (74.42%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD H+LYTLSAVQ+LALFDKLN+LDV+KV++YI GLQNEDGSFS D+W EVD+
Sbjct: 73  GFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDT 132

Query: 118 RFSYIAISHLSLLHQLEKINVEKAFE 144
           RFSYIAI  LS+L  L+KINV+KA +
Sbjct: 133 RFSYIAICCLSILKCLDKINVKKAVD 158

[Close]

BLAST of IVF0012245 vs. TAIR 10
Match: AT5G12210.1 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-30
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+
Sbjct: 78  GFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDT 137

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+L  L+KINVEKA
Sbjct: 138 RFSYIAICCLSILKCLDKINVEKA 161

[Close]

BLAST of IVF0012245 vs. TAIR 10
Match: AT5G12210.2 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-30
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 58  GFSGNTGHDQHILYTLSAVQVLALFDKLNVLDVDKVTDYIVGLQNEDGSFSRDVWDEVDS 117
           GF+GNTGHD HILYTLSAVQ+LALFDK+N+LD+ KV+ Y+  LQNEDGSFS D+W E+D+
Sbjct: 77  GFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDT 136

Query: 118 RFSYIAISHLSLLHQLEKINVEKA 142
           RFSYIAI  LS+L  L+KINVEKA
Sbjct: 137 RFSYIAICCLSILKCLDKINVEKA 160

The following BLAST results are available for this feature:

BLAST of IVF0012245 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHL5	2.7e-31	74.42	Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q84J75	1.5e-29	72.62	Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702...	[more]
P53611	2.2e-25	50.91	Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGT...	[more]
Q5E9B3	1.4e-24	49.09	Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB ...	[more]
B0G172	7.1e-24	54.63	Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoid...	[more]

BLAST of IVF0012245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JME6	1.5e-32	86.90	Geranylgeranyl transferase type-2 subunit beta OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1C294	1.5e-32	88.10	Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1GS02	1.5e-32	86.90	Geranylgeranyl transferase type-2 subunit beta OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0K723	2.5e-32	86.90	Geranylgeranyl transferase type-2 subunit beta OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A1S3CDW8	5.6e-32	85.71	Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of IVF0012245 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887310.1	3.85e-41	88.10	geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hisp...	[more]
XP_038887307.1	7.30e-41	88.10	geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hisp...	[more]
XP_022135990.1	1.03e-40	88.10	geranylgeranyl transferase type-2 subunit beta 1-like [Momordica charantia] >XP_...	[more]
XP_022954124.1	1.11e-40	86.90	geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita moschata]	[more]
XP_022991640.1	1.11e-40	86.90	geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita maxima] >XP_022...	[more]

BLAST of IVF0012245 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12070.1	1.9e-32	74.42	RAB geranylgeranyl transferase beta subunit 2	[more]
AT3G12070.2	1.9e-32	74.42	RAB geranylgeranyl transferase beta subunit 2	[more]
AT5G12210.1	1.0e-30	72.62	RAB geranylgeranyl transferase beta subunit 1	[more]
AT5G12210.2	1.0e-30	72.62	RAB geranylgeranyl transferase beta subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001330	PFTB repeat	PFAM	PF00432	Prenyltrans	coord: 58..81 e-value: 0.019 score: 14.7 coord: 89..130 e-value: 1.1E-8 score: 34.6
None	No IPR available	GENE3D	1.50.10.20		coord: 24..145 e-value: 7.6E-25 score: 89.5
None	No IPR available	PANTHER	PTHR11774:SF13	GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETA	coord: 57..142
IPR045089	Prenyltransferase subunit beta	PANTHER	PTHR11774	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	coord: 57..142
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 57..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012245.2	IVF0012245.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018344	protein geranylgeranylation
cellular_component	GO:0005968	Rab-protein geranylgeranyltransferase complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004663	Rab geranylgeranyltransferase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0008318	protein prenyltransferase activity