IVF0012205 (gene) Melon (IVF77) v1

Overview


Name	IVF0012205
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transcription factor JUNGBRUNNEN 1-like
Location	chr01: 19017919 .. 19018302 (+)
RNA-Seq Expression	IVF0012205
Synteny	IVF0012205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAATAACAAGAATATTATTGATCAAGTTATGGTGCCACCACCAGCTTCTGAAAAAGGTAACAGCAACAATAATAATAATGGTGAAATCAGTTACATCAACTTCAGCAGCTGTGAATCGTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAATAATTACCTCAACAACAACAATCATCATCATCATCATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGCTGCTCTTCAAGTGGTATTATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAA

mRNA sequence

ATGTGCAATAACAAGAATATTATTGATCAAGTTATGGTGCCACCACCAGCTTCTGAAAAAGGTAACAGCAACAATAATAATAATGGTGAAATCAGTTACATCAACTTCAGCAGCTGTGAATCGTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAATAATTACCTCAACAACAACAATCATCATCATCATCATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGCTGCTCTTCAAGTGGTATTATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAA

Coding sequence (CDS)

ATGTGCAATAACAAGAATATTATTGATCAAGTTATGGTGCCACCACCAGCTTCTGAAAAAGGTAACAGCAACAATAATAATAATGGTGAAATCAGTTACATCAACTTCAGCAGCTGTGAATCGTCCATGATTATCCAAACTGAGAAGAAGCCACTACTTCTTGATCCAAATAATTACCTCAACAACAACAATCATCATCATCATCATCATCATCATCAAGAATGGAATACCAATAATAATAGTTATGATCAATATAGCAGCTGCTCTTCAAGTGGTATTATTTCACCTTCAATTCCTTATCCAACAAATCAGCAGCTTGATATCAATGATTTCTTCACTAATAGCAATTGGGATGAGCTCAGATCAATGGTGGATATGTTGTAA

Protein sequence

MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML

Homology

[Close]

BLAST of IVF0012205 vs. ExPASy TrEMBL
Match: A0A5A7UL49 (Transcription factor JUNGBRUNNEN 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00310 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.0e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL 60
           MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL
Sbjct: 196 MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL 255

Query: 61  NNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 120
           NNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL
Sbjct: 256 NNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 315

Query: 121 RSMVDML 128
           RSMVDML
Sbjct: 316 RSMVDML 322

[Close]

BLAST of IVF0012205 vs. ExPASy TrEMBL
Match: A0A0A0K418 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.7e-59
Identity = 115/127 (90.55%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL 60
           +C+N NI+DQ++VPPPASEKGN+NNNNNGEISYINFSSC+SSMIIQTEKKPLLLDPNNYL
Sbjct: 233 LCSNNNIVDQIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYL 292

Query: 61  NNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 120
           NNN    HHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL
Sbjct: 293 NNN----HHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 352

Query: 121 RSMVDML 128
           RSMVDML
Sbjct: 353 RSMVDML 355

[Close]

BLAST of IVF0012205 vs. ExPASy TrEMBL
Match: A0A6J1GLV8 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111455439 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.4e-17
Identity = 68/116 (58.62%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 18  SEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHHHHHHQEWNT 77
           SEK      NN  +  +N  SCE SMIIQTEKKP L  PN           + +HQEW  
Sbjct: 196 SEKNTLKMCNNDPM-IVNL-SCE-SMIIQTEKKPFL--PN-----------YPNHQEW-- 255

Query: 78  NNNSYDQYSSCS------SSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 128
             N+YDQYSS S      SSGIISP I YPTNQQLD+NDFFTNSNWDELRS+VDML
Sbjct: 256 --NNYDQYSSTSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

[Close]

BLAST of IVF0012205 vs. ExPASy TrEMBL
Match: A0A6J1HZZ9 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468456 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16
Identity = 66/116 (56.90%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 18  SEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHHHHHHQEWNT 77
           SEK      NN  +  +NFS    S IIQTEKKP L  PN           + +HQEW  
Sbjct: 196 SEKNTLKMCNNDPM-IVNFS--WESTIIQTEKKPFL--PN-----------YPNHQEW-- 255

Query: 78  NNNSYDQYSSCS------SSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 128
             N+YDQYSS S      SSGIISP I YPTNQQLD+NDFFTNSNWDELRS+VDML
Sbjct: 256 --NNYDQYSSTSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

[Close]

BLAST of IVF0012205 vs. ExPASy TrEMBL
Match: A0A6J1ER43 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111437040 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 56/113 (49.56%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 22  NSNNNNNGEISYINFSSCESSMIIQTEKKPLL-LDPNNYLNNNNHHHHHHHHQEWNTNNN 81
           N     +GE+SY N+ SCE SMI+Q E+K ++   PNN              +EW   N 
Sbjct: 198 NEQVMGSGEVSYNNW-SCE-SMIVQNEQKAVVPSGPNN--------------REWMNKNY 257

Query: 82  SYDQYSSCS------SSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 128
            Y   SS S      SSGIIS  I +PTN+QLD+NDFFTNSNWDELRS+VDML
Sbjct: 258 QYYYSSSSSMAPSPVSSGIISAPIAFPTNEQLDVNDFFTNSNWDELRSVVDML 294

[Close]

BLAST of IVF0012205 vs. NCBI nr
Match: KAA0056532.1 (transcription factor JUNGBRUNNEN 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (661), Expect = 3.03e-84
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL 60
           MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL
Sbjct: 196 MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL 255

Query: 61  NNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 120
           NNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL
Sbjct: 256 NNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 315

Query: 121 RSMVDML 127
           RSMVDML
Sbjct: 316 RSMVDML 322

[Close]

BLAST of IVF0012205 vs. NCBI nr
Match: KAE8646102.1 (hypothetical protein Csa_016723 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 1.95e-75
Identity = 115/127 (90.55%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL 60
           +C+N NI+DQ++VPPPASEKGN+NNNNNGEISYINFSSC+SSMIIQTEKKPLLLDPNNYL
Sbjct: 156 LCSNNNIVDQIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYL 215

Query: 61  NNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 120
           NNN    HHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL
Sbjct: 216 NNN----HHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 275

Query: 121 RSMVDML 127
           RSMVDML
Sbjct: 276 RSMVDML 278

[Close]

BLAST of IVF0012205 vs. NCBI nr
Match: XP_004139890.2 (transcription factor JUNGBRUNNEN 1 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 2.02e-74
Identity = 115/127 (90.55%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL 60
           +C+N NI+DQ++VPPPASEKGN+NNNNNGEISYINFSSC+SSMIIQTEKKPLLLDPNNYL
Sbjct: 233 LCSNNNIVDQIIVPPPASEKGNNNNNNNGEISYINFSSCDSSMIIQTEKKPLLLDPNNYL 292

Query: 61  NNNNHHHHHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 120
           NNN    HHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL
Sbjct: 293 NNN----HHHHHQEWNTNNNSYDQYSSCSSSGIISPSIPYPTNQQLDINDFFTNSNWDEL 352

Query: 121 RSMVDML 127
           RSMVDML
Sbjct: 353 RSMVDML 355

[Close]

BLAST of IVF0012205 vs. NCBI nr
Match: XP_038888171.1 (putative NAC domain-containing protein 94 [Benincasa hispida])

HSP 1 Score: 159 bits (402), Expect = 6.15e-45
Identity = 98/135 (72.59%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MCNNKNIIDQVMVPPPASEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYL 60
           MCNN    D++MV   A+E+GN    N+GEISYINFS CES MIIQTEKKPLLLDPN YL
Sbjct: 220 MCNN----DEIMVGS-AAERGN----NHGEISYINFS-CES-MIIQTEKKPLLLDPN-YL 279

Query: 61  NNNNHHHHHHHHQEWNTNNNS-YDQYSSCSS-------SGIISPSIPYPTNQQLDINDFF 120
           NNNN+++HHHH QEWN+NNN+ YDQYSSCSS       SGIISP IPYPTNQ +D+NDFF
Sbjct: 280 NNNNNNNHHHH-QEWNSNNNNNYDQYSSCSSMDPSPVSSGIISPPIPYPTNQLVDVNDFF 339

Query: 121 TNSNWDELRSMVDML 127
           TNSNWDELRSMVDML
Sbjct: 340 TNSNWDELRSMVDML 341

[Close]

BLAST of IVF0012205 vs. NCBI nr
Match: XP_023553947.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101 bits (251), Expect = 5.57e-23
Identity = 70/116 (60.34%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 18  SEKGNSNNNNNGEISYINFSSCESSMIIQTEKKPLLLDPNNYLNNNNHHHHHHHHQEWNT 77
           SEK     +NN  +  +NFS CES MIIQTEKKP L    NY N          HQEWN 
Sbjct: 196 SEKNTLKMSNNDPM-IVNFS-CES-MIIQTEKKPFLP---NYPN----------HQEWNN 255

Query: 78  NNNSYDQYSSCS------SSGIISPSIPYPTNQQLDINDFFTNSNWDELRSMVDML 127
               YDQYSS S      SSGIISP I YPTNQQLD+NDFFTNSNWDELRS+VDML
Sbjct: 256 ----YDQYSSTSMDPSPVSSGIISPPIGYPTNQQLDVNDFFTNSNWDELRSVVDML 291

The following BLAST results are available for this feature:

BLAST of IVF0012205 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012205 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UL49	4.0e-66	100.00	Transcription factor JUNGBRUNNEN 1-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0K418	4.7e-59	90.55	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237830 PE=4 SV...	[more]
A0A6J1GLV8	4.4e-17	58.62	transcription factor JUNGBRUNNEN 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HZZ9	2.9e-16	56.90	transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468...	[more]
A0A6J1ER43	1.9e-12	49.56	transcription factor JUNGBRUNNEN 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of IVF0012205 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056532.1	3.03e-84	100.00	transcription factor JUNGBRUNNEN 1-like [Cucumis melo var. makuwa]	[more]
KAE8646102.1	1.95e-75	90.55	hypothetical protein Csa_016723 [Cucumis sativus]	[more]
XP_004139890.2	2.02e-74	90.55	transcription factor JUNGBRUNNEN 1 [Cucumis sativus]	[more]
XP_038888171.1	6.15e-45	72.59	putative NAC domain-containing protein 94 [Benincasa hispida]	[more]
XP_023553947.1	5.57e-23	60.34	transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0012205 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012205.1	IVF0012205.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding