IVF0012203 (gene) Melon (IVF77) v1

Overview
NameIVF0012203
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr01: 8076982 .. 8077176 (+)
RNA-Seq ExpressionIVF0012203
SyntenyIVF0012203
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACACATGTCACAGCATCGGGAGAGGCATTCCTGACACCGTGTTGGTACGGCGTCGGGAATGCCTCTCCCGACTCGGTTTTTCTGACATTTGTCCTGATGCCGTGAAATACGTCGGCATATCATTTCCCGACGTATTTTTCATTTTCGTCGACGTTTTTATGCGTCGAGAGTACCCCCGTCTCTTATAG

mRNA sequence

ATGGCCGACACATGTCACAGCATCGGGAGAGGCATTCCTGACACCGTGTTGGTACGGCGTCGGGAATGCCTCTCCCGACTCGGTTTTTCTGACATTTGTCCTGATGCCGTGAAATACGTCGGCATATCATTTCCCGACGTATTTTTCATTTTCGTCGACGTTTTTATGCGTCGAGAGTACCCCCGTCTCTTATAG

Coding sequence (CDS)

ATGGCCGACACATGTCACAGCATCGGGAGAGGCATTCCTGACACCGTGTTGGTACGGCGTCGGGAATGCCTCTCCCGACTCGGTTTTTCTGACATTTGTCCTGATGCCGTGAAATACGTCGGCATATCATTTCCCGACGTATTTTTCATTTTCGTCGACGTTTTTATGCGTCGAGAGTACCCCCGTCTCTTATAG

Protein sequence

MADTCHSIGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFPDVFFIFVDVFMRREYPRLL
Homology
BLAST of IVF0012203 vs. ExPASy TrEMBL
Match: A0A5D3CRC0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00660 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 40/63 (63.49%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 2   ADTCHSIGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFPDVFFIFVDVFMRREYP 61
           AD    +G+G PD  LVRRRE LSR    D+ PD V +VGISFPDV  IF DVF+RREYP
Sbjct: 128 ADASPGVGKGFPDADLVRRRESLSRRISPDVLPDVVLFVGISFPDVLCIFADVFVRREYP 187

Query: 62  RLL 65
           RLL
Sbjct: 188 RLL 190

BLAST of IVF0012203 vs. ExPASy TrEMBL
Match: A0A5A7UPN4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00290 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.1e-07
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 8   IGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFPDVFFIF 52
           + RGIPD VLV  +ECLSRL   D+ PDA K VGISFPDVFF F
Sbjct: 509 VERGIPDAVLVTHQECLSRLTSPDVRPDAPKNVGISFPDVFFYF 552

BLAST of IVF0012203 vs. ExPASy TrEMBL
Match: A0A5D3DGV6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00040 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 7   SIGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFPDVFFIFVDVFMRRE 60
           ++ R IP+ VLV RRE +SR   SD+CPDAV  VG  +PDVF    D+ MRRE
Sbjct: 114 AVERDIPNAVLVMRREFVSRRVSSDVCPDAVNDVGKRYPDVFLASFDIVMRRE 166

BLAST of IVF0012203 vs. ExPASy TrEMBL
Match: A0A5D3E1C4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00160 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.4e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0

Query: 1  MADTCHSIGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFP 46
          + D CH +G+GIPD VLVRRRECLS+L   D   D VK V  S P
Sbjct: 4  LVDACHGVGKGIPDVVLVRRRECLSQLISPDAILDVVKNVKASRP 48

BLAST of IVF0012203 vs. ExPASy TrEMBL
Match: A0A5A7UWQ1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold612G00110 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.4e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0

Query: 1  MADTCHSIGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFP 46
          + D CH +G+GIPD VLVRRRECLS+L   D   D VK V  S P
Sbjct: 4  LVDACHGVGKGIPDVVLVRRRECLSQLISPDAILDVVKNVKASRP 48

BLAST of IVF0012203 vs. NCBI nr
Match: TYK14413.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 6.53e-18
Identity = 40/63 (63.49%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 2   ADTCHSIGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFPDVFFIFVDVFMRREYP 61
           AD    +G+G PD  LVRRRE LSR    D+ PD V +VGISFPDV  IF DVF+RREYP
Sbjct: 128 ADASPGVGKGFPDADLVRRRESLSRRISPDVLPDVVLFVGISFPDVLCIFADVFVRREYP 187

Query: 62  RLL 64
           RLL
Sbjct: 188 RLL 190

BLAST of IVF0012203 vs. NCBI nr
Match: KAA0056276.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.51e-09
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 8   IGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFPDVFFIF 51
           + RGIPD VLV  +ECLSRL   D+ PDA K VGISFPDVFF F
Sbjct: 509 VERGIPDAVLVTHQECLSRLTSPDVRPDAPKNVGISFPDVFFYF 552

BLAST of IVF0012203 vs. NCBI nr
Match: TYK22927.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 3.25e-09
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 7   SIGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFPDVFFIFVDVFMRRE 59
           ++ R IP+ VLV RRE +SR   SD+CPDAV  VG  +PDVF    D+ MRRE
Sbjct: 114 AVERDIPNAVLVMRREFVSRRVSSDVCPDAVNDVGKRYPDVFLASFDIVMRRE 166

BLAST of IVF0012203 vs. NCBI nr
Match: TYK01082.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 5.81e-08
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 8   IGRGIPDTVLVRRRECLSRLGFSDICPDAVKYVGISFPDVFFIFVDVFMRREYP 61
           +GRGIP+ +LV     +S+    D+C DAVK VG  +PDVF  F DVF+RRE P
Sbjct: 116 VGRGIPNAMLVMHGGFISQRVSFDVCLDAVKDVGKRYPDVFLGFFDVFVRRESP 169

BLAST of IVF0012203 vs. NCBI nr
Match: TYK21553.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.74e-07
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0

Query: 31  DICPDAVKYVGISFPDVFFIFVDVFMRREYPRLL 64
           D+ PDA+ YVG  +PDV FIF DVF RREYPRLL
Sbjct: 540 DVLPDAILYVGKGYPDVLFIFADVFWRREYPRLL 573

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CRC05.7e-1363.49CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UPN46.1e-0768.18CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DGV64.0e-0654.72NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3E1C43.4e-0557.78CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UWQ13.4e-0557.78CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
TYK14413.16.53e-1863.49CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0056276.12.51e-0968.18CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-... [more]
TYK22927.13.25e-0954.72NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
TYK01082.15.81e-0851.85zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa][more]
TYK21553.12.74e-0770.59CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012203.1IVF0012203.1mRNA