IVF0012198 (gene) Melon (IVF77) v1

Overview


Name	IVF0012198
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Serine-rich adhesin for platelets
Location	chr04: 8092127 .. 8092390 (+)
RNA-Seq Expression	IVF0012198
Synteny	IVF0012198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAAACATCGTCATCTTCGTCATCAGCGTCATCGTCATACTGGGTATCATCATCCTCCGGCAAAGAAGGGAGATTCCAACAGGCAGCGACGTACGGTCAGGCCGGGTGAAGCAAGAACAAAGGGTGGGCATTTGCTAGTCCGATGAGAGCTTTCATGAAGCCATCGTCTTCATCATCAGAAGGGAAAAGAGAATCATCGGAGAAAAATTCGACTCCAAATTTGGACGCCATTCCTTCATTGCTGGCCGTAAGAATCTGA

mRNA sequence

ATGATTCAAACATCGTCATCTTCGTCATCAGCGTCATCGTCATACTGGGTATCATCATCCTCCGGCAAAGAAGGGAGATTCCAACAGGCAGCGACGTACGGTCAGGCCGGTCCGATGAGAGCTTTCATGAAGCCATCGTCTTCATCATCAGAAGGGAAAAGAGAATCATCGGAGAAAAATTCGACTCCAAATTTGGACGCCATTCCTTCATTGCTGGCCGTAAGAATCTGA

Coding sequence (CDS)

ATGATTCAAACATCGTCATCTTCGTCATCAGCGTCATCGTCATACTGGGTATCATCATCCTCCGGCAAAGAAGGGAGATTCCAACAGGCAGCGACGTACGGTCAGGCCGGTCCGATGAGAGCTTTCATGAAGCCATCGTCTTCATCATCAGAAGGGAAAAGAGAATCATCGGAGAAAAATTCGACTCCAAATTTGGACGCCATTCCTTCATTGCTGGCCGTAAGAATCTGA

Protein sequence

MIQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQAGPMRAFMKPSSSSSEGKRESSEKNSTPNLDAIPSLLAVRI

Homology

[Close]

BLAST of IVF0012198 vs. ExPASy TrEMBL
Match: A0A5A7U5P3 (Serine-rich adhesin for platelets OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001140 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24
Identity = 73/86 (84.88%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 2   IQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQAG-----------PMRAFMKPSSSSS 61
           IQTSSSSSSASSSYWVSSSSG+EGRFQQAATYGQAG           PMRAF KPSSSSS
Sbjct: 300 IQTSSSSSSASSSYWVSSSSGEEGRFQQAATYGQAGRSKNKGWAFASPMRAFTKPSSSSS 359

Query: 62  EGKRESSEKNSTPNLDAIPSLLAVRI 77
           EGKRESSEKNSTPNLDAIPSLLAVRI
Sbjct: 360 EGKRESSEKNSTPNLDAIPSLLAVRI 385

[Close]

BLAST of IVF0012198 vs. ExPASy TrEMBL
Match: A0A1S3AY44 (uncharacterized protein DDB_G0271670 OS=Cucumis melo OX=3656 GN=LOC103483856 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24
Identity = 73/86 (84.88%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 2   IQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQAG-----------PMRAFMKPSSSSS 61
           IQTSSSSSSASSSYWVSSSSG+EGRFQQAATYGQAG           PMRAF KPSSSSS
Sbjct: 300 IQTSSSSSSASSSYWVSSSSGEEGRFQQAATYGQAGRSKNKGWAFASPMRAFTKPSSSSS 359

Query: 62  EGKRESSEKNSTPNLDAIPSLLAVRI 77
           EGKRESSEKNSTPNLDAIPSLLAVRI
Sbjct: 360 EGKRESSEKNSTPNLDAIPSLLAVRI 385

[Close]

BLAST of IVF0012198 vs. ExPASy TrEMBL
Match: A0A0A0L7Y1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G159440 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.5e-23
Identity = 73/87 (83.91%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1   MIQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQAG-----------PMRAFMKPSSSS 60
           MIQTSSSSSSASSSYWVSSSSG+EGRFQQ ATYGQAG           PMRAF KPSSSS
Sbjct: 300 MIQTSSSSSSASSSYWVSSSSGEEGRFQQ-ATYGQAGRSKNKGWAFASPMRAFTKPSSSS 359

Query: 61  SEGKRESSEKNSTPNLDAIPSLLAVRI 77
           SEGKRESSEKNSTPNLDAIPSLLAVRI
Sbjct: 360 SEGKRESSEKNSTPNLDAIPSLLAVRI 385

[Close]

BLAST of IVF0012198 vs. ExPASy TrEMBL
Match: A0A5D3C909 (Putative serine-rich protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00480 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.1e-22
Identity = 69/83 (83.13%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 1  MIQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQAG-----------PMRAFMKPSSSS 60
          MIQTSSSSSSASSSYWVSSSS +EGRFQQAATYGQAG           PMRAF KPSSSS
Sbjct: 1  MIQTSSSSSSASSSYWVSSSSDEEGRFQQAATYGQAGRSKNKGWAFASPMRAFTKPSSSS 60

Query: 61 SEGKRESSEKNSTPNLDAIPSLL 73
          SEGKRESSEKNSTPNLDAIPSLL
Sbjct: 61 SEGKRESSEKNSTPNLDAIPSLL 83

[Close]

BLAST of IVF0012198 vs. ExPASy TrEMBL
Match: A0A6J1GU50 (uncharacterized protein LOC111457510 OS=Cucurbita moschata OX=3662 GN=LOC111457510 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-18
Identity = 66/86 (76.74%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1   MIQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQ----------AGPMRAFMKPSSSSS 60
           M QTSSSSSSASSSYWVSSSSG +GRF   A YGQ          A PMRAF KP SSSS
Sbjct: 278 MNQTSSSSSSASSSYWVSSSSGDDGRF-PPAPYGQGRSKNRGWAFASPMRAFGKPPSSSS 337

Query: 61  EGKRESSEKNSTPNLDAIPSLLAVRI 77
           EGKRESSEKNSTPNLDAIPSLLAVRI
Sbjct: 338 EGKRESSEKNSTPNLDAIPSLLAVRI 362

[Close]

BLAST of IVF0012198 vs. NCBI nr
Match: XP_008438897.1 (PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo] >KAA0049506.1 serine-rich adhesin for platelets [Cucumis melo var. makuwa] >TYK16186.1 serine-rich adhesin for platelets [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 3.30e-30
Identity = 73/86 (84.88%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 2   IQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQAG-----------PMRAFMKPSSSSS 61
           IQTSSSSSSASSSYWVSSSSG+EGRFQQAATYGQAG           PMRAF KPSSSSS
Sbjct: 300 IQTSSSSSSASSSYWVSSSSGEEGRFQQAATYGQAGRSKNKGWAFASPMRAFTKPSSSSS 359

Query: 62  EGKRESSEKNSTPNLDAIPSLLAVRI 76
           EGKRESSEKNSTPNLDAIPSLLAVRI
Sbjct: 360 EGKRESSEKNSTPNLDAIPSLLAVRI 385

[Close]

BLAST of IVF0012198 vs. NCBI nr
Match: TYK07772.1 (putative serine-rich protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 1.37e-29
Identity = 69/83 (83.13%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 1  MIQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQAG-----------PMRAFMKPSSSS 60
          MIQTSSSSSSASSSYWVSSSS +EGRFQQAATYGQAG           PMRAF KPSSSS
Sbjct: 1  MIQTSSSSSSASSSYWVSSSSDEEGRFQQAATYGQAGRSKNKGWAFASPMRAFTKPSSSS 60

Query: 61 SEGKRESSEKNSTPNLDAIPSLL 72
          SEGKRESSEKNSTPNLDAIPSLL
Sbjct: 61 SEGKRESSEKNSTPNLDAIPSLL 83

[Close]

BLAST of IVF0012198 vs. NCBI nr
Match: XP_004134219.3 (uncharacterized protein DDB_G0271670 [Cucumis sativus] >KAE8650397.1 hypothetical protein Csa_009537 [Cucumis sativus])

HSP 1 Score: 115 bits (289), Expect = 9.45e-29
Identity = 73/87 (83.91%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1   MIQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQAG-----------PMRAFMKPSSSS 60
           MIQTSSSSSSASSSYWVSSSSG+EGRFQQA TYGQAG           PMRAF KPSSSS
Sbjct: 300 MIQTSSSSSSASSSYWVSSSSGEEGRFQQA-TYGQAGRSKNKGWAFASPMRAFTKPSSSS 359

Query: 61  SEGKRESSEKNSTPNLDAIPSLLAVRI 76
           SEGKRESSEKNSTPNLDAIPSLLAVRI
Sbjct: 360 SEGKRESSEKNSTPNLDAIPSLLAVRI 385

[Close]

BLAST of IVF0012198 vs. NCBI nr
Match: KAG7018602.1 (hypothetical protein SDJN02_20472, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100 bits (249), Expect = 4.48e-23
Identity = 66/86 (76.74%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1   MIQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQ----------AGPMRAFMKPSSSSS 60
           M QTSSSSSSASSSYWVSSSSG++GRF  A  YGQ          A PMRAF KP SSSS
Sbjct: 280 MNQTSSSSSSASSSYWVSSSSGEDGRFPPA-PYGQGRSKNRGWAFASPMRAFGKPPSSSS 339

Query: 61  EGKRESSEKNSTPNLDAIPSLLAVRI 76
           EGKRESSEKNSTPNLDAIPSLLAVRI
Sbjct: 340 EGKRESSEKNSTPNLDAIPSLLAVRI 364

[Close]

BLAST of IVF0012198 vs. NCBI nr
Match: KAG6582206.1 (hypothetical protein SDJN03_22208, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (249), Expect = 4.54e-23
Identity = 66/86 (76.74%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1   MIQTSSSSSSASSSYWVSSSSGKEGRFQQAATYGQ----------AGPMRAFMKPSSSSS 60
           M QTSSSSSSASSSYWVSSSSG++GRF  A  YGQ          A PMRAF KP SSSS
Sbjct: 281 MNQTSSSSSSASSSYWVSSSSGEDGRFPPA-PYGQGRSKNRGWAFASPMRAFGKPPSSSS 340

Query: 61  EGKRESSEKNSTPNLDAIPSLLAVRI 76
           EGKRESSEKNSTPNLDAIPSLLAVRI
Sbjct: 341 EGKRESSEKNSTPNLDAIPSLLAVRI 365

[Close]

BLAST of IVF0012198 vs. TAIR 10
Match: AT5G49100.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 6.1e-06
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 1   MIQTSSSSSSASSSYWVSSSSGKE------------GRFQQAATYGQAGPMRAFMKPSSS 60
           MI TSSSSSS+SSS WVSSSS +             G   ++  +  A PMRAF   S S
Sbjct: 307 MIMTSSSSSSSSSS-WVSSSSAEHHHHHNHNMGHGGGGRNRSWGWSFASPMRAFTSSSYS 366

Query: 61  SSEGKR---ESSEKNSTPNLDAIPSLLAVR 76
              G+     ++ KN+TPNL AIPSLL+VR
Sbjct: 367 GKRGRTISDSTTSKNTTPNLGAIPSLLSVR 395

The following BLAST results are available for this feature:

BLAST of IVF0012198 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U5P3	3.8e-24	84.88	Serine-rich adhesin for platelets OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3AY44	3.8e-24	84.88	uncharacterized protein DDB_G0271670 OS=Cucumis melo OX=3656 GN=LOC103483856 PE=...	[more]
A0A0A0L7Y1	5.5e-23	83.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G159440 PE=4 SV=1	[more]
A0A5D3C909	6.1e-22	83.13	Putative serine-rich protein-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1GU50	4.1e-18	76.74	uncharacterized protein LOC111457510 OS=Cucurbita moschata OX=3662 GN=LOC1114575...	[more]

BLAST of IVF0012198 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438897.1	3.30e-30	84.88	PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo] >KAA0049506.1 ser...	[more]
TYK07772.1	1.37e-29	83.13	putative serine-rich protein-like protein [Cucumis melo var. makuwa]	[more]
XP_004134219.3	9.45e-29	83.91	uncharacterized protein DDB_G0271670 [Cucumis sativus] >KAE8650397.1 hypothetica...	[more]
KAG7018602.1	4.48e-23	76.74	hypothetical protein SDJN02_20472, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6582206.1	4.54e-23	76.74	hypothetical protein SDJN03_22208, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0012198 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49100.1	6.1e-06	46.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012198.1	IVF0012198.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006415	translational termination