IVF0012182 (gene) Melon (IVF77) v1

Overview
NameIVF0012182
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptiontranscription factor AS1
Locationchr01: 3348372 .. 3348554 (+)
RNA-Seq ExpressionIVF0012182
SyntenyIVF0012182
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGGGATGTCGGCCACTCCGCGTCGCAATCACGTCGCGACAATAATAAAACTTACTTCATGGCCACCAATGGGGGATTTCTTCAAACTGATTCATCTACTCCACCACCATCTCTTCATTCTTGGCTTTCCAACTCCAACGGTGTTGTAGTTACCATCAAAGCTGGAAAAGCAAATTAA

mRNA sequence

ATGATTGGGGATGTCGGCCACTCCGCGTCGCAATCACGTCGCGACAATAATAAAACTTACTTCATGGCCACCAATGGGGGATTTCTTCAAACTGATTCATCTACTCCACCACCATCTCTTCATTCTTGGCTTTCCAACTCCAACGGTGTTGTAGTTACCATCAAAGCTGGAAAAGCAAATTAA

Coding sequence (CDS)

ATGATTGGGGATGTCGGCCACTCCGCGTCGCAATCACGTCGCGACAATAATAAAACTTACTTCATGGCCACCAATGGGGGATTTCTTCAAACTGATTCATCTACTCCACCACCATCTCTTCATTCTTGGCTTTCCAACTCCAACGGTGTTGTAGTTACCATCAAAGCTGGAAAAGCAAATTAA

Protein sequence

MIGDVGHSASQSRRDNNKTYFMATNGGFLQTDSSTPPPSLHSWLSNSNGVVVTIKAGKAN
Homology
BLAST of IVF0012182 vs. ExPASy TrEMBL
Match: A0A6J1J530 (transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111481437 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.9e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 22 MAT-NGGFLQTDSSTPPPSLHSWLSNSNG 50
          MAT NGGFLQTDSSTPPPSL  WLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

BLAST of IVF0012182 vs. ExPASy TrEMBL
Match: A0A5D3DN74 (Transcription factor AS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001650 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.9e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 22 MAT-NGGFLQTDSSTPPPSLHSWLSNSNG 50
          MAT NGGFLQTDSSTPPPSL  WLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

BLAST of IVF0012182 vs. ExPASy TrEMBL
Match: A0A6J1CVZ3 (transcription factor AS1 OS=Momordica charantia OX=3673 GN=LOC111015078 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.9e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 22 MAT-NGGFLQTDSSTPPPSLHSWLSNSNG 50
          MAT NGGFLQTDSSTPPPSL  WLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

BLAST of IVF0012182 vs. ExPASy TrEMBL
Match: A0A6J1F8X8 (transcription factor AS1-like OS=Cucurbita moschata OX=3662 GN=LOC111441895 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.9e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 22 MAT-NGGFLQTDSSTPPPSLHSWLSNSNG 50
          MAT NGGFLQTDSSTPPPSL  WLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

BLAST of IVF0012182 vs. ExPASy TrEMBL
Match: A0A1S3B5G1 (transcription factor AS1 OS=Cucumis melo OX=3656 GN=LOC103486384 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.9e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 22 MAT-NGGFLQTDSSTPPPSLHSWLSNSNG 50
          MAT NGGFLQTDSSTPPPSL  WLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

BLAST of IVF0012182 vs. NCBI nr
Match: KAG7027949.1 (Transcription factor AS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.3 bits (129), Expect = 9.42e-07
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 20 YFMAT-NGGFLQTDSSTPPPSLHSWLSNSN 48
          Y MAT NGGFLQTDSSTPPPSL  WLSNSN
Sbjct: 11 YLMATSNGGFLQTDSSTPPPSLPPWLSNSN 40

BLAST of IVF0012182 vs. NCBI nr
Match: KAG6580540.1 (Transcription factor AS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017292.1 Transcription factor AS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.9 bits (128), Expect = 1.10e-06
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 22 MAT-NGGFLQTDSSTPPPSLHSWLSNSNG 49
          MAT NGGFLQTDSSTPPPSL  WLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

BLAST of IVF0012182 vs. NCBI nr
Match: XP_022934855.1 (transcription factor AS1-like [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 1.10e-06
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 22 MAT-NGGFLQTDSSTPPPSLHSWLSNSNG 49
          MAT NGGFLQTDSSTPPPSL  WLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

BLAST of IVF0012182 vs. NCBI nr
Match: XP_022982614.1 (transcription factor AS1-like [Cucurbita maxima] >XP_022982615.1 transcription factor AS1-like [Cucurbita maxima])

HSP 1 Score: 53.9 bits (128), Expect = 1.19e-06
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 22 MAT-NGGFLQTDSSTPPPSLHSWLSNSNG 49
          MAT NGGFLQTDSSTPPPSL  WLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

BLAST of IVF0012182 vs. NCBI nr
Match: XP_008442545.1 (PREDICTED: transcription factor AS1 [Cucumis melo] >KAA0044093.1 transcription factor AS1 [Cucumis melo var. makuwa] >TYK25044.1 transcription factor AS1 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 1.19e-06
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 22 MAT-NGGFLQTDSSTPPPSLHSWLSNSNG 49
          MAT NGGFLQTDSSTPPPSL  WLSNSNG
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSNG 29

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J5305.9e-0489.66transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111481437 PE=4 S... [more]
A0A5D3DN745.9e-0489.66Transcription factor AS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A6J1CVZ35.9e-0489.66transcription factor AS1 OS=Momordica charantia OX=3673 GN=LOC111015078 PE=4 SV=... [more]
A0A6J1F8X85.9e-0489.66transcription factor AS1-like OS=Cucurbita moschata OX=3662 GN=LOC111441895 PE=4... [more]
A0A1S3B5G15.9e-0489.66transcription factor AS1 OS=Cucumis melo OX=3656 GN=LOC103486384 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG7027949.19.42e-0786.67Transcription factor AS1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6580540.11.10e-0689.66Transcription factor AS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG70... [more]
XP_022934855.11.10e-0689.66transcription factor AS1-like [Cucurbita moschata][more]
XP_022982614.11.19e-0689.66transcription factor AS1-like [Cucurbita maxima] >XP_022982615.1 transcription f... [more]
XP_008442545.11.19e-0689.66PREDICTED: transcription factor AS1 [Cucumis melo] >KAA0044093.1 transcription f... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012182.1IVF0012182.1mRNA