IVF0012165 (gene) Melon (IVF77) v1

Overview


Name	IVF0012165
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 13833238 .. 13833534 (-)
RNA-Seq Expression	IVF0012165
Synteny	IVF0012165

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAACTCACCGATACTTTGGATGGTGCAAACCGATTAAAAAAAGAAGGGCGTGCAAACGAAGGAAGGGCGTGCAAATGGTGGAAAAGCGACGGAAGAGAAATCGATGGTGGAAAAGCGACGGAAGAGAAAGCGACGGTTGATAACAGAAGAGAAAGCGACGGTGGAAAAACGGAAAAGAAAGCTACGGTGGAAAAGCGACAGTGGAAATGTGTCGGAAAGAGTTTTTTAAAAAACGGAAGAACAAATACGCCGGAAAACTTTACAGAAGATGGTTTATTTTTTTGGGAGTAA

mRNA sequence

ATGAAACAACTCACCGATACTTTGGATGGTGCAAACCGATTAAAAAAAGAAGGGCGTGCAAACGAAGGAAGGGCGTGCAAATGGTGGAAAAGCGACGGAAGAGAAATCGATGGTGGAAAAGCGACGGAAGAGAAAGCGACGGTTGATAACAGAAGAGAAAGCGACGGTGGAAAAACGGAAAAGAAAGCTACGGTGGAAAAGCGACAGTGGAAATGTGTCGGAAAGAGTTTTTTAAAAAACGGAAGAACAAATACGCCGGAAAACTTTACAGAAGATGGTTTATTTTTTTGGGAGTAA

Coding sequence (CDS)

ATGAAACAACTCACCGATACTTTGGATGGTGCAAACCGATTAAAAAAAGAAGGGCGTGCAAACGAAGGAAGGGCGTGCAAATGGTGGAAAAGCGACGGAAGAGAAATCGATGGTGGAAAAGCGACGGAAGAGAAAGCGACGGTTGATAACAGAAGAGAAAGCGACGGTGGAAAAACGGAAAAGAAAGCTACGGTGGAAAAGCGACAGTGGAAATGTGTCGGAAAGAGTTTTTTAAAAAACGGAAGAACAAATACGCCGGAAAACTTTACAGAAGATGGTTTATTTTTTTGGGAGTAA

Protein sequence

MKQLTDTLDGANRLKKEGRANEGRACKWWKSDGREIDGGKATEEKATVDNRRESDGGKTEKKATVEKRQWKCVGKSFLKNGRTNTPENFTEDGLFFWE

Homology

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BLAST of IVF0012165 vs. NCBI nr
Match: KAA0063265.1 (BTB/POZ domain-containing protein [Cucumis melo var. makuwa] >TYK31509.1 BTB/POZ domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.5 bits (114), Expect = 2.29e-04
Identity = 36/69 (52.17%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 2   KQLTDTLDGANRLKKEGRANEGRACKWWKSDGREIDGGKATEEKATVDNRR--------- 60
           KQLT TL GANRLKKEGRA                DGGKAT+EK TV+ RR         
Sbjct: 91  KQLTHTLGGANRLKKEGRA----------------DGGKATKEKPTVEKRRKRKRRWKNG 143

The following BLAST results are available for this feature:

BLAST of IVF0012165 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012165 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012165 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063265.1	2.29e-04	52.17	BTB/POZ domain-containing protein [Cucumis melo var. makuwa] >TYK31509.1 BTB/POZ...	[more]

BLAST of IVF0012165 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012165.1	IVF0012165.1	mRNA