IVF0012154 (gene) Melon (IVF77) v1

Overview
NameIVF0012154
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionBeta-galactosidase
Locationchr09: 17224093 .. 17229603 (+)
RNA-Seq ExpressionIVF0012154
SyntenyIVF0012154
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAAGCTCCAATGGCTTGTTGCAACTCTAGCTTGCTTGACTTTTTGCATAGGGGATAATGTTTCATATGATTCAAATGCGATAATTATCAACGGAGAACGACGTATTATCTTCTCAGGCTCAATTCATTATCCACGCAGCACTGAAGCAATGTGGCCTGATCTTATTCAAAAAGCTAAAGATGGCGGACTTGATGCAATTGAGACATACATTTTTTGGGATCGTCACGAGCCACAACGACGAAAATATGATTTCTCTGGACGTTTAGATTTTATTAAATTCTTCCAGCTCATCCAAGATGCTGGACTTTATGTTGTCATGAGGATTGGTCCTTACGTGTGTGCCGAGTGGAACTACGGAGGCTTTCCAGTGTGGTTGCACAATATGCCAGGAATCCAACTCCGAACTAACAATCAAGTCTACAAGAATGAAATGCAAACTTTCACGACAAAGATAGTGAATATGTGTAAACAAGCCAATCTCTTTGCTTCACAAGGAGGGCCAATAATATTAGCTCAAATCGAGAATGAGTATGGAAATGTGATGACACCAGCTTATGGAGATGCAGGAAAAGCATATATCAATTGGTGTGCTCAAATGGCTGAGTCTCTCAATATTGGCGTTCCATGGATCATGTGCCAACAAAGTGATGCCCCACAACCTATCATTAATACATGCAATGGATTCTACTGTGATAACTTTACTCCAAACAATCGTAAGAGCCCAAAGATGTTCACTGAAAATTGGGTGGGATGGTTTAAGAAATGGGGCGACAAAGACCCTTACAGAACTGCAGAAGATGTAGCATTTTCTGTGGCAAGATTTTTTCAATCTGGCGGCGTCTTCAACAATTATTACATGTATCATGGAGGCACCAACTTTGGAAGAACATCGGGAGGTCCATTCATCACTACATCTTACGATTACAACGCCCCACTTGATGAATATGGGAACTTGAATCAACCTAAATGGGGGCATCTCAAACAACTCCATGCATCAATAAAGTTAGGAGAGAAGATTCTCACTAACGGCACACGCTCAGACCAAAACTTTGGTAGCTCTGTAACTTTAACGAAATTCTTTAACCCAACAACAGGGGAGAGGTTCTGCTTTTTAAGCAACACAGATGGAAAAAATGATGCCACCATAGATCTACAAGCAGATGGAAAATATTTTGTACCAGCTTGGTCTGTGAGCATTCTTGATGGTTGCAACAAGGAGGTTTACAACACTGCAAAAGTAAATTCTCAAACATCTATGTTCGTGAAGGAGCAAAATGAGAAGGAAAATGCACAACTCTCGTGGGCTTGGGCTCCAGAACCTATGAAAGACACACTACAAGGAAACGGTAAATTTGCGGCAAACCTTCTTTTGGAACAAAAAAGGGTCACGGTTGATTTCAGCGACTACTTTTGGTACATGACGAGCGTTGACACTAACGAAACATCTTCACTTCAAAATGCGACTCTCCAAGTGAATACAAAGGGTCATGTGCTTCATGCTTTCGTTAATAAAAGATACATTGGGTCGCAGTGGGGGAGTAATGGCCAGAGTTTTGTGTTTGAGAAACCGGTTCTACTAAAATCAGGAACCAACACAATAACTCTTTTGAGTGCCACCGTTGGGTTGAAGAATTACGACGCATTTTATGATATGGTGCCAACGGGAATCGATGGAGGTCCCATCTATCTAATTGGAGATGGAAACGTGAAAACTGATTTGTCATCAAACTTATGGTCTTATAAGGTTGGATTAAATGGAGAAATGAAGCAAATTTACAACCCAATGTTCTCACAGAGAACAAATTGGATTGCAGTAAATAAAAAATCTATTGGAAGGCGAATGACATGGTACAAGACTAGCTTTAAGACACCTGCCGGAATTGACCCAGTAGTCTTGGACATGCAAGGAATGGGAAAAGGCCAAGCTTGGGTAAATGGGCAAAGCATAGGCCGATTTTGGCCATCTTTCATTGCTGGCAATGATAGTTGCAGCGCAACATGTGACTACAGAGGTGCATACAACCCTAGCAAATGTGTGGGAAATTGTGGAAATCCTTCTCAAAGATGGTATCATGTTCCAAGATCATTTCTTTCGAGCAACACAAACACATTGATTTTATTTGAAGAAATTGGTGGAAATCCACAACACGTGTCGGTTCAAACAATCACAATAGGAACTATATGTGCAAATGCTAATGAAGGAAGCACCTTAGAGTTGTCTTGTCAGGGAGGACATGTCATCTCTGAAATCCAATTTGCTAGCTATGGAAATCCAGAGGGAAAATGTGGTTCGTTTAAGCAAGGTTCATGGGATGTGAAAAATAGTGCTCTTTTTGTGGAAAAAGCTTGCATTGGCATGGAAAGTTGTTCAATTGATGTATCCGCGAAGTCATTTGGATTAGGCAATGCTACAAATTTATCTGCAAGATTGGCAGTTCAAGCACTATGTGCACAGAATTGATGAATAATAGTGTAATATATGTGAATAAATATTAATTTTTTAACCAACTATGTACCTTTATTTCCTTCTTTTTCATAGAACATGGTTTCTTAATCACAAACGTATAAGAAACTATAAACACCTTGCGGTCTATTAATGATAGACCGTACTGAAAAATATTGGTCTATCACTGATAGCCCATAAAAGTCTCGATTGGAGTCTGTCACTAAACTTTGCTATATTTGAAACTTTTTTAAAAGGTTTTTATGTATTTAATTTTTATTTTTAATTAAAAGAAATATAGCCATACATGCCAAACCCCTCCCCCTCCCCCCGAAAGGGAAATAGAGGAATAAATTATGAATCTTGGGCTGTAGCGTGAAACCCCCAATCGTGACATCATCTAGCTTACTCTATCTAACCCTCTTGACGGCCAACCACCGAACGCAAACTTTATTGCCGCAAGCCACATCGAAACGTTGCTCTACTGCCGGTATGGCCAGACCACCGTTAGTTTTTTCTCTCTCACTCGAGACCTCGCCACATCCGCACGCCATAATCAGCCAACAATCGCCTCCAACCATCGTTTTCTTTTACCAGTCACCGATCGGATCACTGCCGGTCGCCCCTTCTCTCCCTTTGGGAGTTTCTTTCTCTCACGTGTGCATAAGAGAAACCCACGAAGTTTCTACCGCAATCTTACGCCGATCTGCATCCAGCTACCATGACCCACAGTTCCAACGGATTTGATTTGAGTAATCCACTTCGTTTCAGTGTTGGAATTGAAAGGTAGGAAACATTTCGAACCTTATTTAGCAAGGTTGTGCCGTTCTATATGAGTTTCTTTGGCGGTGTTGCTCCAAGTCACTTTTGAGCTCAATTTTGATGCTATAATTTGTGTTGCCATTATTAATGGTTCCGAGACAATTTCTTGACAAAGGACAGCTTGGGTAAAACATTCAAAAACTTTTTTTTTTATAATGAATTTACAGCTTTGATCAAGGGGTATGAAAGTTGAAATTTGTTTTGGGTCCATATTTTAGAATTTCAAAAGGGTTCGGTAAGCCAAAGGAAAGATTATCTAGATATATATTAAGTTTCAACCTCCTAGAATGCCTTTGAGATAGGAAAAATGTAATGTAATTAAATTTTAAGGCATGCTGAGAAATTTTATGCGATGGTATGTGTGGTTTATGACTGACAATTTATAAGAACGTGCTATAAAGTTATAAGTTACTATGATATGATTATATAATGTGAGACCCCTTGTTGCACGTTGCGTGTATAACTCAGTGGCAACTACCCTTCTACTCATCGCTATGTACACACTAGATATGTGTACTTTCAGGTCAGCTAGATTTGTGTGCCTAATGGCCAACCAGTTTTGGTTTTAAAATTGCATGCATAGTAGTAATGACCCTGGTTAAGGACCTTAAAGAACCGGGTTGTTACATGAAAGATCTTTAGTTCCTAATTGTATTGATATCTCTAACTTGCAAAGAAGGCGATGTGAAACTAGGTGTAATTTAATGTTATGTCGGCTCCTTCGAATTTTGTAGTTTGTCTTTGTTGTTTTCTATCTACTTGATTATATCTTCTAGTGGGCTCATTATTGAAGAGTAGGCAATAAGTTTAGAATGATATTCTGCTTTGGAAATATTACGGAAAGTGTACCCTTTGTTCTCCCTTCTCTTGAAAGATATTGCCAACTTGCACCAACGTGGTTTAAGATAAACTCTTGAATCATCACTTGGATTTAGCAGCTTTATTATTTCCCTCTATGGTTGCCATTAAAGGTGAAAAAAGGGAGATGCATCATGCTTGCAAAACTTATGGAGAAAAGGTTATCCAGAAGTAAAATTTTAAACTGACAAAATGATGACGACGAACTATCCTGTTACAACTGAACCCTATTATTTTTTGTTTTACTGTATTATGGTTTTGATGGTAATTGAAGAGGATTTCTCGATATTGACATAAATTAAATTTTCAACCGTTTATCTTTTTGTAATTTTGTTTGCTCCCTGAAGTCTTTTACTTCCTATTATTTGGTTGATCATCTCTTTTTTTGTTTCCTCTAGGGTCACTTGGATTTATTTACCTTCAATGTTTCAACCATCACACATCACACATCATGATATGTAAATTAAAGGAGTATTTTAAATAATGAAACAATATTTTCACTAAACAACTAACATCTTTAATTAATTGGAACATGAACTTTAATTAATTAGTTTTTTTCATGCTAATTGAGTGTAATGAGAAGGATTAAAATCCACATTTTTAGAGGGTTGTTAAATAAATATCTTGATATGTCATCTTTACGTTTGGTGCAAATATAATATCTATCTATCTATTTACATTCAATTGCTCATAGTATAATAGCTTAACATTAAAGTTGATGGCTTACAACATGAGGCCAAATGTGAAAAATGGAAAATAGAATCCTAAGTTGTCCTGGGGAAAAGAAGACAATTTTTTGAATTGCGTACAATAGTTGTAATTCGGTAAAAGGTTATTTGAGGGATAAGGTCAACTAGAATTCTTCAATTTCAGAGGATGCAACTCATATCGAAAAACTTTTGTCAGTCGCTTTTCTATGTTTAGAATTGATCAACAACCTTGAACACAAATATAGATAGGAAAGAACTCTCACCTTATCACTATATGTATTCTATATAAATAAACACATCGATTCAGGAAACATAAATAAACCAAAGACATAAGTTGTGGGATCAAATATGTTTAAGCTCCAATGGCTTGTTGCAACTCTAGCTTGCTTGACTTTTTGCATAGGGGATAATGTTTCATATGATTCAAATGCGATAATTATCAACGGAGAACGACGTATTATCTTCTCAGGCTCAATTCATTATCCACGCAGCACTGAAGCAATGTGGCCTGATCTTATTCAAAAAGCTAAAGATGGCGGACTTGATGCAATTGAGACATACATTTTTTGGGATCGTCACGAGCCACAACGACGAAAATATGATTTCTCTGGACGTTTAGATTTTATTAAATTCTTCCAGCTCATCCAAGATGCTGGACTTTATGTTGTCATGA

mRNA sequence

ATGTTTAAGCTCCAATGGCTTGTTGCAACTCTAGCTTGCTTGACTTTTTGCATAGGGGATAATGTTTCATATGATTCAAATGCGATAATTATCAACGGAGAACGACCACTGAAGCAATGTGGCCTGATCTTATTCAAAAAGCTAAAGATGGCGGACTTGATGCAATTGAGACATACATTTTTTGGGATCGTCACGAGCCACAACGACGAAAATATGATTTCTCTGGACATTTTATTAAATTCTTCCAGCTCATCCAAGATGCTGGACTTTATGTTGTCATGA

Coding sequence (CDS)

ATGTTTAAGCTCCAATGGCTTGTTGCAACTCTAGCTTGCTTGACTTTTTGCATAGGGGATAATGTTTCATATGATTCAAATGCGATAATTATCAACGGAGAACGACCACTGAAGCAATGTGGCCTGATCTTATTCAAAAAGCTAAAGATGGCGGACTTGATGCAATTGAGACATACATTTTTTGGGATCGTCACGAGCCACAACGACGAAAATATGATTTCTCTGGACATTTTATTAAATTCTTCCAGCTCATCCAAGATGCTGGACTTTATGTTGTCATGA

Protein sequence

MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERPLKQCGLILFKKLKMADLMQLRHTFFGIVTSHNDENMISLDILLNSSSSSKMLDFMLS
Homology
[Close]
BLAST of IVF0012154 vs. ExPASy TrEMBL
Match: A0A0A0KJ96 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136350 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.2e-33
Identity = 83/107 (77.57%), Postives = 84/107 (78.50%), Query Frame = 0 

Query: 1   MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGER------------PLKQCGLILFKKL 60
           MFKLQWLVATLAC  FC+GDNVSYDSNAIIINGER             LKQCGLI FKKL
Sbjct: 1   MFKLQWLVATLACFAFCLGDNVSYDSNAIIINGERCIISQAQSIIHAALKQCGLISFKKL 60

Query: 61  KMADLMQLRHTFFGIVTSHNDENMISLD--ILLNSSSSSKMLDFMLS 94
           KM DLMQLRHTF GIVTSHNDENMISLD  I LNSSS SK LDFMLS
Sbjct: 61  KMVDLMQLRHTFSGIVTSHNDENMISLDVYISLNSSSLSKTLDFMLS 107

[Close]
BLAST of IVF0012154 vs. ExPASy TrEMBL
Match: A0A5D3CWN8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001010 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERP-LKQCGL-----------ILFKKL 51
          MFKLQW++ATLACLTFCIGDNVSYDSNAIIING+R  +  C +           +LFKKL
Sbjct: 1  MFKLQWVIATLACLTFCIGDNVSYDSNAIIINGQRRIIFSCSIHYPRSTEAMWPVLFKKL 60

[Close]
BLAST of IVF0012154 vs. ExPASy TrEMBL
Match: A0A5D3DUP4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00870 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-11
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERPLKQCGLILFKKLKMA---DLMQ 56
          MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGER +   G I + +   A   DL+Q
Sbjct: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERRIIFSGSIHYPRSTEAMWPDLIQ 58

[Close]
BLAST of IVF0012154 vs. ExPASy TrEMBL
Match: A0A5A7V9Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00750 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-11
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERPLKQCGLILFKKLKMA---DLMQ 56
          MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGER +   G I + +   A   DL+Q
Sbjct: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERRIIFSGSIHYPRSTEAMWPDLIQ 58

[Close]
BLAST of IVF0012154 vs. ExPASy TrEMBL
Match: A0A5A7TH43 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001510 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.5e-11
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERPLKQCGLILFKKLKMA---DLMQ 56
          MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGER +   G I + +   A   DL+Q
Sbjct: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERRIIFSGSIHYPRSTEAMWPDLIQ 58

[Close]
BLAST of IVF0012154 vs. NCBI nr
Match: KAE8648315.1 (hypothetical protein Csa_004659 [Cucumis sativus])

HSP 1 Score: 156 bits (394), Expect = 3.28e-47
Identity = 85/107 (79.44%), Postives = 87/107 (81.31%), Query Frame = 0 

Query: 1   MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGER------------PLKQCGLILFKKL 60
           MFKLQWLVATLACL FC+GDNVSYDSNAIIINGER             LKQCGLILFKKL
Sbjct: 1   MFKLQWLVATLACLAFCLGDNVSYDSNAIIINGERCIISQAQSIIHAALKQCGLILFKKL 60

Query: 61  KMADLMQLRHTFFGIVTSHNDENMISLDIL--LNSSSSSKMLDFMLS 93
           K ADLMQLRHTFFGIVTSHNDENMISLD+   LNSSS SK LDFMLS
Sbjct: 61  KTADLMQLRHTFFGIVTSHNDENMISLDVYISLNSSSLSKTLDFMLS 107

[Close]
BLAST of IVF0012154 vs. NCBI nr
Match: KAA0040579.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.29e-16
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERPLKQCGLILFKKLKMA---DLMQ 55
          MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGER +   G I + +   A   DL+Q
Sbjct: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERRIIFSGSIHYPRSTEAMWPDLIQ 58

[Close]
BLAST of IVF0012154 vs. NCBI nr
Match: TYK16321.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.27e-14
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERPLK-QCGL-----------ILFKKL 50
          MFKLQW++ATLACLTFCIGDNVSYDSNAIIING+R +   C +           +LFKKL
Sbjct: 1  MFKLQWVIATLACLTFCIGDNVSYDSNAIIINGQRRIIFSCSIHYPRSTEAMWPVLFKKL 60

[Close]
BLAST of IVF0012154 vs. NCBI nr
Match: KAA0062481.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.28e-14
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERPLKQCGLILFKKLKMA---DLMQ 55
          MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGER +   G I + +   A   DL+Q
Sbjct: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERRIIFSGSIHYPRSTEAMWPDLIQ 58

[Close]
BLAST of IVF0012154 vs. NCBI nr
Match: TYK27403.1 (beta-galactosidase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.28e-14
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERPLKQCGLILFKKLKMA---DLMQ 55
          MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGER +   G I + +   A   DL+Q
Sbjct: 1  MFKLQWLVATLACLTFCIGDNVSYDSNAIIINGERRIIFSGSIHYPRSTEAMWPDLIQ 58

The following BLAST results are available for this feature:
BLAST of IVF0012154 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0012154 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ967.2e-3377.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136350 PE=4 SV=1[more]
A0A5D3CWN82.7e-1164.52Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00... [more]
A0A5D3DUP43.5e-1170.69Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0... [more]
A0A5A7V9Y93.5e-1170.69Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0... [more]
A0A5A7TH433.5e-1170.69Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G0... [more]
BLAST of IVF0012154 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648315.13.28e-4779.44hypothetical protein Csa_004659 [Cucumis sativus][more]
KAA0040579.13.29e-1670.69beta-galactosidase 7-like [Cucumis melo var. makuwa][more]
TYK16321.12.27e-1464.52beta-galactosidase 7-like [Cucumis melo var. makuwa][more]
KAA0062481.12.28e-1470.69beta-galactosidase 7-like [Cucumis melo var. makuwa][more]
TYK27403.12.28e-1470.69beta-galactosidase 7-like [Cucumis melo var. makuwa][more]
BLAST of IVF0012154 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012154.1IVF0012154.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0048046 apoplast
cellular_component GO:0005773 vacuole
molecular_function GO:0004565 beta-galactosidase activity
molecular_function GO:0030246 carbohydrate binding