IVF0012058 (gene) Melon (IVF77) v1

Overview


Name	IVF0012058
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Location	chr08: 2589566 .. 2590728 (+)
RNA-Seq Expression	IVF0012058
Synteny	IVF0012058

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCATCAGCAAGGATTCTTTCTCCTACTCAGTTCCCTTCTATTTTCTCACTACCAAATTTAAACAGAGGCAATGTTTTTCCTGTTAGGCCAATAAAGCCAAGAGCTTCCAAGTCTATGCGCTTGCATTGCAGTAAGATGTATGTCCCCGGTGGGTTCTCTCTCTCTCTTTCATTCTATTTTTATCCCAGATTTTTGTTTGTTTGTTTGTTGGTTTATTTGTGTTCAAAAATTAGGGTTTGGAGAGGCCTCACCAGAATCAAAGGCAGCCAGAAATTTGCACAATTTCTTCACGTATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAACTGCTTTGTTGTAATTGTTCTGCCATGTTGTTGTTGTGTGGGTTTTCATTGGTATTGATTCTTGTTTTGGAAGAGCAGAGCTATAATCCAGAAGCGTACCTGGAGTTGATGGAGTTTCTCGATAGACATTCACTGAATGATGGGGACAAATTTCTGGCCAGTTTGATGCGGGAATCGTCGAGGCATAAATCTCTTGGTAATACCCCAAATCTACTCTATTTCTTTACTTTGTCCCAAATCTAGAGCGGGTTCATTAGGTGACAAAATTGCGTAAGAATTTGAAGCATACAAGAAGAAATATGAAATGCATGATCTTCATTCAGATGTTTTTCCTGGTTTCTTTGGCCAAAACCCATCAGCATAGGAAACCGATGGTTAATAGATTCTAATTTAGTCAAGTATGAAGAAAGATGAAGTTTATTGGTAATCAAGTTTCATATCTTTGTTCTAACAATGAGGCTTCTAATTGTGGAATTTCTCTTGGCTTTGACAGCATTGCGCATACTAGAGGTTAGTTCTGTACACTTAGTTGATGAATGCATCCCCACTGTGAAAAACACTCTTAAGAAAGCAAATCGTTGATTCCAGGTTCGATCTGCATATTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAGTAAGAAAAACTCGTACATTTCTCTGCCACTTTCCTAACAGCATTATGATCAGTTGCTTGCTTCCTTACTGAGATTCATTATTGTTTTCAGATGGTTGGCGAATCCAACACAAGAATAATGAGGGAGTACTTGACAGAGACAAGTCCATCAGACACCGAGAAGTGA

mRNA sequence

ATGGAATCATCAGCAAGGATTCTTTCTCCTACTCAGTTCCCTTCTATTTTCTCACTACCAAATTTAAACAGAGGCAATGTTTTTCCTGTTAGGCCAATAAAGCCAAGAGCTTCCAAGTCTATGCGCTTGCATTGCAGTAAGATGTATGTCCCCGGGTTTGGAGAGGCCTCACCAGAATCAAAGGCAGCCAGAAATTTGCACAATTTCTTCACGTATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGAGCTATAATCCAGAAGCGTACCTGGAGTTGATGGAGTTTCTCGATAGACATTCACTGAATGATGGGGACAAATTTCTGGCCAGTTTGATGCGGGAATCGTCGAGGCATAAATCTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATATTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTGGCGAATCCAACACAAGAATAATGAGGGAGTACTTGACAGAGACAAGTCCATCAGACACCGAGAAGTGA

Coding sequence (CDS)

ATGGAATCATCAGCAAGGATTCTTTCTCCTACTCAGTTCCCTTCTATTTTCTCACTACCAAATTTAAACAGAGGCAATGTTTTTCCTGTTAGGCCAATAAAGCCAAGAGCTTCCAAGTCTATGCGCTTGCATTGCAGTAAGATGTATGTCCCCGGGTTTGGAGAGGCCTCACCAGAATCAAAGGCAGCCAGAAATTTGCACAATTTCTTCACGTATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGAGCTATAATCCAGAAGCGTACCTGGAGTTGATGGAGTTTCTCGATAGACATTCACTGAATGATGGGGACAAATTTCTGGCCAGTTTGATGCGGGAATCGTCGAGGCATAAATCTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATATTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTCAAAATGGTTGGCGAATCCAACACAAGAATAATGAGGGAGTACTTGACAGAGACAAGTCCATCAGACACCGAGAAGTGA

Protein sequence

MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK

Homology

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BLAST of IVF0012058 vs. ExPASy Swiss-Prot
Match: Q94AU9 (Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX1 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.7e-53
Identity = 102/137 (74.45%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 36  RASKSMRLHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELME 95
           R  K  R+  +KMYVPGFGEASPE+KAA++LH+FFTYVAVRIV+AQLESYNPEAY+EL E
Sbjct: 35  RKCKQTRICSNKMYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELRE 94

Query: 96  FLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESN 155
           FLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK V +SN
Sbjct: 95  FLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKRLAFKNVDDSN 154

Query: 156 TRIMREYLTETSPSDTE 173
           TR+MREY+ ETS  +T+
Sbjct: 155 TRLMREYVLETSHVETD 171

[Close]

BLAST of IVF0012058 vs. ExPASy Swiss-Prot
Match: Q44177 (RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rbcX PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-07
Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           + A  L ++ TY AVR+++ QL   NP   + L EF  RH + + D +L ++M E   +K
Sbjct: 9   ETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NK 68

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESN---TRIMREYLTETSPSDTEK 174
            L LRIL VR    +   E+  L  +    + +SN    R + E LT+   S T++
Sbjct: 69  ELVLRILTVRENLAEGVLEF--LPEMVLSQIKQSNGNHRRSLLERLTQVDSSSTDQ 119

[Close]

BLAST of IVF0012058 vs. ExPASy Swiss-Prot
Match: Q31N04 (RuBisCO chaperone RbcX OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rbcX PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.4e-04
Identity = 31/101 (30.69%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 63  ARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSL 122
           AR L N+ TY AV ++  QL   NP     L  F    S  DG+ +LA+L+   +  + L
Sbjct: 20  ARMLVNYLTYQAVCVIRDQLAETNPAGAYRLQVFSAEFSFQDGEAYLAALL---NHDREL 79

Query: 123 ALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYL 164
            LR++ VR    ++    D L  +    + E+N    R  L
Sbjct: 80  GLRVMTVREHLAEHIL--DYLPEMTIAQIQEANINHRRALL 115

[Close]

BLAST of IVF0012058 vs. ExPASy Swiss-Prot
Match: A0A0H3K9R3 (RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rbcX PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.4e-04
Identity = 31/101 (30.69%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 63  ARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSL 122
           AR L N+ TY AV ++  QL   NP     L  F    S  DG+ +LA+L+   +  + L
Sbjct: 29  ARMLVNYLTYQAVCVIRDQLAETNPAGAYRLQVFSAEFSFQDGEAYLAALL---NHDREL 88

Query: 123 ALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYL 164
            LR++ VR    ++    D L  +    + E+N    R  L
Sbjct: 89  GLRVMTVREHLAEHIL--DYLPEMTIAQIQEANINHRRALL 124

[Close]

BLAST of IVF0012058 vs. ExPASy Swiss-Prot
Match: Q55670 (RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rbcX PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.4e-04
Identity = 35/104 (33.65%), Postives = 53/104 (50.96%), Query Frame = 0


Query: 66  LHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLALR 125
           L ++ TY AV  + ++L   NP   + L ++L  HS+ +G+ FL  L+ E   +K L LR
Sbjct: 16  LQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDE---NKELVLR 75

Query: 126 ILEVRSAYCKNDFEWDNLKRLAFKMVGESN---TRIMREYLTET 167
           IL VR    ++    D L  +    + ESN    R + E LT T
Sbjct: 76  ILAVREDIAESVL--DFLPGMTRNSLAESNIAHRRHLLERLTRT 114

[Close]

BLAST of IVF0012058 vs. ExPASy TrEMBL
Match: A0A5D3CNU4 (Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006230 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 7.5e-92
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 174
           SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of IVF0012058 vs. ExPASy TrEMBL
Match: A0A1S3B054 (uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 7.5e-92
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 174
           SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of IVF0012058 vs. ExPASy TrEMBL
Match: A0A0A0KMZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.7e-89
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPS+FSLPNLNRGNVFPVRPIKPRA K MRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 174
           +LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTRIMREYLTETSPSDTEK
Sbjct: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of IVF0012058 vs. ExPASy TrEMBL
Match: A0A6J1KRH1 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496972 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.1e-78
Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60
           MES ARILSPT FPS+F LPNLNR N  PV P KP ASKS+RLHC KMYVPGFGEASPE+
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHTELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 174
           SLALRILEVRSAYCKNDFEWDNLKRLA KMVGESNTR+MREY+TETSP D EK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 172

[Close]

BLAST of IVF0012058 vs. ExPASy TrEMBL
Match: A0A6J1BTL5 (chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005638 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 148/175 (84.57%), Postives = 161/175 (92.00%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASK--SMRLHCSKMYVPGFGEASP 60
           MESSAR+LSPTQFPS+F LPNLNR  VFP+ P KP+ASK   ++L C KMYVPGFGEASP
Sbjct: 1   MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASP 60

Query: 61  ESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSR 120
           E+KAA+NLHNFFTYVAVRIV AQLESYNPEA++ELMEFLDRHSLNDGDKFLASLMRESSR
Sbjct: 61  EAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSR 120

Query: 121 HKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 174
           HKSLALRILEVRSAYCKNDFEWDNLKRLA KM  ESNTR+MREY+TETSPS+TEK
Sbjct: 121 HKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK 175

[Close]

BLAST of IVF0012058 vs. NCBI nr
Match: XP_008440039.1 (PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chaperonin-like RBCX protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 347 bits (890), Expect = 1.82e-120
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173
           SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of IVF0012058 vs. NCBI nr
Match: XP_004134778.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 338 bits (868), Expect = 4.13e-117
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60
           MESSARILSPTQFPS+FSLPNLNRGNVFPVRPIKPRA K MRLHCSKMYVPGFGEASPES
Sbjct: 1   MESSARILSPTQFPSLFSLPNLNRGNVFPVRPIKPRAFKPMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173
           +LALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTRIMREYLTETSPSDTEK
Sbjct: 121 ALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of IVF0012058 vs. NCBI nr
Match: XP_038881664.1 (chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 322 bits (826), Expect = 1.05e-110
Identity = 160/173 (92.49%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60
           ME SARILS TQFPS+F LPNLNR NVFPV P KP+A+KSMRLHCSKMYVPGFGEASPES
Sbjct: 1   MEPSARILSSTQFPSLFPLPNLNRSNVFPVWPKKPKATKSMRLHCSKMYVPGFGEASPES 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAARNLHNFFTYVAVRIVTAQLESYNPEAY ELMEFLDRHSLNDGDKFLASLMRESSRHK
Sbjct: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYQELMEFLDRHSLNDGDKFLASLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173
           SLALRILEVRSAYCKNDFEWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 173

[Close]

BLAST of IVF0012058 vs. NCBI nr
Match: XP_023003335.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 300 bits (769), Expect = 4.95e-102
Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60
           MES ARILSPT FPS+F LPNLNR N  PV P KP ASKS+RLHC KMYVPGFGEASPE+
Sbjct: 1   MESCARILSPTHFPSLFPLPNLNRSNFNPVWPKKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHTELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173
           SLALRILEVRSAYCKNDFEWDNLKRLA KMVGESNTR+MREY+TETSP D EK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 172

[Close]

BLAST of IVF0012058 vs. NCBI nr
Match: XP_023518339.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300 bits (768), Expect = 7.04e-102
Identity = 150/173 (86.71%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MESSARILSPTQFPSIFSLPNLNRGNVFPVRPIKPRASKSMRLHCSKMYVPGFGEASPES 60
           MES ARILSPT FPS+F LPNLNR N  PV P KP ASKS+RLHC KMYVPGFGEASPE+
Sbjct: 1   MESCARILSPTHFPSVFPLPNLNRRNFNPVWPRKPEASKSLRLHCHKMYVPGFGEASPEA 60

Query: 61  KAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHK 120
           KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHK
Sbjct: 61  KAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHK 120

Query: 121 SLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173
           SLALRILEVRSAYCKNDFEWDNLKRLA KMVGESNTR+MREY+TETSP D EK
Sbjct: 121 SLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 172

[Close]

BLAST of IVF0012058 vs. TAIR 10
Match: AT4G04330.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-54
Identity = 102/137 (74.45%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 36  RASKSMRLHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELME 95
           R  K  R+  +KMYVPGFGEASPE+KAA++LH+FFTYVAVRIV+AQLESYNPEAY+EL E
Sbjct: 35  RKCKQTRICSNKMYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELRE 94

Query: 96  FLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLAFKMVGESN 155
           FLD +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLAFK V +SN
Sbjct: 95  FLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKRLAFKNVDDSN 154

Query: 156 TRIMREYLTETSPSDTE 173
           TR+MREY+ ETS  +T+
Sbjct: 155 TRLMREYVLETSHVETD 171

[Close]

BLAST of IVF0012058 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-05
Identity = 38/110 (34.55%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 64  RNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSLNDGDKFLASLMRESSRHKSLA 123
           + + N+FTY AVR V  QL   NP  Y      +  +   DG +FL +L +ES   + LA
Sbjct: 94  KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKES---QELA 153

Query: 124 LRILEVR-SAYCKNDFEWDNLKRLAFKMVGESNTRIMREYLTETS--PSD 171
            R++  R   Y K   + D+ K   ++ + + N  +MRE L ET   PSD
Sbjct: 154 ERVMITRLHLYGKWIKKCDHGK--IYQEISDENLALMRERLMETVIWPSD 198

The following BLAST results are available for this feature:

BLAST of IVF0012058 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AU9	1.7e-53	74.45	Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44177	5.5e-07	32.76	RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6...	[more]
Q31N04	7.4e-04	30.69	RuBisCO chaperone RbcX OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) ...	[more]
A0A0H3K9R3	7.4e-04	30.69	RuBisCO chaperone RbcX OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG...	[more]
Q55670	7.4e-04	33.65	RuBisCO chaperone RbcX OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111170...	[more]

BLAST of IVF0012058 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNU4	7.5e-92	100.00	Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B054	7.5e-92	100.00	uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=...	[more]
A0A0A0KMZ4	2.7e-89	97.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1	[more]
A0A6J1KRH1	6.1e-78	86.71	chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1BTL5	1.8e-77	84.57	chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of IVF0012058 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440039.1	1.82e-120	100.00	PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chape...	[more]
XP_004134778.1	4.13e-117	97.11	chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]	[more]
XP_038881664.1	1.05e-110	92.49	chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_023003335.1	4.95e-102	86.71	chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]	[more]
XP_023518339.1	7.04e-102	86.71	chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0012058 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04330.1	1.2e-54	74.45	Chaperonin-like RbcX protein	[more]
AT5G19855.1	3.1e-05	34.55	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 61..166 e-value: 4.3E-33 score: 113.9
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..172
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 48..173 e-value: 4.3E-54 score: 184.1
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 55..171
None	No IPR available	PANTHER	PTHR33791:SF12	CHAPERONIN-LIKE RBCX PROTEIN 1, CHLOROPLASTIC	coord: 1..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012058.2	IVF0012058.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0033314	mitotic DNA replication checkpoint signaling
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009409	response to cold
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005664	nuclear origin of replication recognition complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003688	DNA replication origin binding
molecular_function	GO:0044183	protein folding chaperone