IVF0012033 (gene) Melon (IVF77) v1

Overview
NameIVF0012033
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D2
Locationchr07: 20457141 .. 20459932 (-)
RNA-Seq ExpressionIVF0012033
SyntenyIVF0012033
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCAAGAAAACCTCGCGTTTAGGGTTCTTCAACTTTTTTTCAAAAAGAGCAATAGGAACCTTAGTTTTTCCACGCGCGAGCCATTTCTCCTGCTCATCTCCTCCTTCGATCTTCTTTATTCTTCGCCACTTCGCCGCCCTCCTCTCCCGTTCCTTCACCTTCGCTCTTCTTCGCCGCCGGTAAGCGTTATCTCTCTCTCTCTCTCTCTCCCTCCATCTCACTCTCCGTTTCGTTTTACAGCTACTCTTTCTTTCTCTCTTCTTTTAGCTGCTCTGTCTCCTCCTACTGAATTTTTTATGCAGTTTCCCCATTACTGTGTTCTTAAGATATTGCATCTGACTTATATATTATTTTCTAAGATATTGCATCTCTTTTCTCGTTGTGAATTTTTCTTGAACAGTTTAACCTAGACTGTGGTCTCTCTGGAGCATGATGTTCTTTAGGGTAACTTTAGGAACATACTGTATATGAAATTATGCTGGTGCGGTTGTAATTACTGTTATTCTTTCTATGTGCTTATGGTTGTATGTTTGTCATGTAATTGCAGCCTCACTCCAAGGACATTGCCCAGGATCTACTTCCAGTTACGACATGAGGTATTATGTTCTTCGGTATTTGTATACTTCTTTTGTTCGCGCATCTTAGTCTTTTTTGTTTTTTTAGTAAATTCTTTACATACTAATGGCTTTCGTGTCCTTTTTTGTCTTCAATTGCAGCCGACCAATGGAGGAAGATGTAAGTTCCTTCAGTCTTTTATGCTTTTATTTTTAGTACTTTCATCCAATATATGTTGCCTTTGCCTAATTGGTCTAGCCTCTTATTAGCACAAGTGTTAATGAATCATGTCTTGCTCTTGAGTCATTACCAATGCTTTTCATTGTATAATATCTGCGGCTTCTTTTTCTTTTCGTTTACACAACTCTTGTAAGTTGGAAGAAAGTGTTATCTTCGTACCGAAAAAATATGATCTTTTTTCCCACAATTATTTGACTAGTCCACATGAAGCAACTATTATTCGGCTATTTCTTTTTAAGTTATTAATTTTGGGTGACGTTTTGTCACGTTTTTTTTTTTAAAATTAATCTATTTGTTTTTTAACCTTTAGTTAAAAAGGTCGGCTTCATGTCAAATTTAAATATAACCAAATTCTACTGGTTGAATGATATTTTTACATGTTGAGGTTTGAAGCTCAGAAACCATTTCAAAAGTTCAACTGGCCATTGTGTTTGGACCAGGAAGGGCCAGATATTTTTTATGTCTTCAAAAAGAAAATTTCTTATTTTCTATCATTCACCTGGCTTCCGTGAATGATGTTTCTTGAACCATCTAGTAAAGCAATACCAGTTCTATGTTGGGAATTCGTTGGTAGTTCATCTTTAAAAAGGGTTTGATAATAAGCATTGTTAGTTCTTTCTCAATAGAAGTCTTTGTTTCTGTTAAATGTGAAATTTGTGCTATCTTTCAGGTGCTATGATTGGCAAGAAAGGATATGATTTCTTAAAACTAGTTTTGTACCTTTTGGAGTAAAACTGATGATCTTTTGATTCAGTTCTGTTTTTCTCTTTCAACTTTGATTCTATAGTTGGTTAATGTATTTTTTTTCTCTATCCATTTGATGGTTGTTTACCTACTTCTTACACTTTGCATTCTACTTGTGAAAAAATGTTCTGCTTTTAAATAAAAAATTTTAACTGTGACTTTTCCGTGAAACTCATTTCTATAAGTAAATTACCATATAGGTTTCATTTCTTTTTTTTTTCTTTCTAGTGTTAGCTTAATGTTTTCTCTCTCTAGAGTTTTTTTTCCTTGGTTTAATCTCTCCAGTCACCCTTCCTTAGTTTGTTCCTTTGGGGTCTTAGTGCAAAATTCTTGGACTTGTGTTCTGTATTTTTTTCGACTTCCAACTCTATCGAAGTATTTCTACAAACACAATACGAATTACTTATTTTGAACTCTCTGCAGACTAGCAAGAATGAGGAAGAAGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCATTTGTTTATGTTGTGTGCGTTTAACAGTTCCACTTTGTAAATCAAGGCATAACTGTTCAAGTGAAAATGATGTTAAAATGTTTTGAACCTCCTTGACAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTCTTATTGATGTGTGCTTACTGTTTACTCTTTTCCTTGCTTAGACTCGAGTCATGGATCTTATGTCTTATTACTATGACCAGGTACCTAAAACTGGGAAAGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTTAGAGGAGACTCGGTCATTATCGTTCTTAGGAATCCCAAGTAAGAAGAGTTGATCATCTCATCATATGTTCAGTTTGGATTCTCGAGTCTACTCCATTTGTCTACCAATCTTTCTTCCTTGTCATCATCAAACTTTCATTTGATAGCCTGATCTTCTGCTAAGCTTGGGGCTATCTATATCAGTTTGTAGTATTTTTAATTTTTCTTTCCTGCAAACCATCTTACCAAATACTGTAACTCTAGAAAGTGTATCTGTTTAGGTATTGGAGATTATTTAGTAGAAATTCCATATGTTTTTGACGTGTGTATTGAATAGAGTTTATCTTTGCAACTGTTGAGACGTTATTTGTTTTGATCACAAGTGATATTATCATTCATAA

mRNA sequence

CGCAAGAAAACCTCGCGTTTAGGGTTCTTCAACTTTTTTTCAAAAAGAGCAATAGGAACCTTAGTTTTTCCACGCGCGAGCCATTTCTCCTGCTCATCTCCTCCTTCGATCTTCTTTATTCTTCGCCACTTCGCCGCCCTCCTCTCCCGTTCCTTCACCTTCGCTCTTCTTCGCCGCCGCCTCACTCCAAGGACATTGCCCAGGATCTACTTCCAGTTACGACATGAGCCGACCAATGGAGGAAGATACTAGCAAGAATGAGGAAGAAGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAAGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTTAGAGGAGACTCGGTCATTATCGTTCTTAGGAATCCCAAGTAAGAAGAGTTGATCATCTCATCATATGTTCAGTTTGGATTCTCGAGTCTACTCCATTTGTCTACCAATCTTTCTTCCTTGTCATCATCAAACTTTCATTTGATAGCCTGATCTTCTGCTAAGCTTGGGGCTATCTATATCAGTTTGTAGTATTTTTAATTTTTCTTTCCTGCAAACCATCTTACCAAATACTGTAACTCTAGAAAGTGTATCTGTTTAGGTATTGGAGATTATTTAGTAGAAATTCCATATGTTTTTGACGTGTGTATTGAATAGAGTTTATCTTTGCAACTGTTGAGACGTTATTTGTTTTGATCACAAGTGATATTATCATTCATAA

Coding sequence (CDS)

ATGAGCCGACCAATGGAGGAAGATACTAGCAAGAATGAGGAAGAAGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAAGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTTAGAGGAGACTCGGTCATTATCGTTCTTAGGAATCCCAAGTAA

Protein sequence

MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Homology
[Close]
BLAST of IVF0012033 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of IVF0012033 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of IVF0012033 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of IVF0012033 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.1e-45
Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+ ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 13  EELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 72

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 73  WTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]
BLAST of IVF0012033 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.7e-41
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 0 

Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+ +  E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Sbjct: 74  WTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]
BLAST of IVF0012033 vs. ExPASy TrEMBL
Match: A0A1S3BTT5 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.5e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of IVF0012033 vs. ExPASy TrEMBL
Match: A0A5A7TNA0 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004930 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.5e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 27  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 86

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 87  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 133

[Close]
BLAST of IVF0012033 vs. ExPASy TrEMBL
Match: A0A6J1J3W3 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC111483160 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.5e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of IVF0012033 vs. ExPASy TrEMBL
Match: A0A0A0KUK4 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis sativus OX=3659 GN=Csa_4G046730 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.5e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 188

[Close]
BLAST of IVF0012033 vs. ExPASy TrEMBL
Match: A0A6J1EM19 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111435853 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.5e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of IVF0012033 vs. NCBI nr
Match: XP_004146504.1 (small nuclear ribonucleoprotein Sm D2 [Cucumis sativus] >XP_008452073.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452074.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452075.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_022929177.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_022985082.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima] >XP_023551877.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo] >KAE8649185.1 hypothetical protein Csa_014590 [Cucumis sativus])

HSP 1 Score: 213 bits (543), Expect = 1.10e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of IVF0012033 vs. NCBI nr
Match: KAA0044802.1 (small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (543), Expect = 2.56e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 27  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 86

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 87  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 133

[Close]
BLAST of IVF0012033 vs. NCBI nr
Match: XP_022983472.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima])

HSP 1 Score: 212 bits (540), Expect = 3.15e-69
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of IVF0012033 vs. NCBI nr
Match: XP_027340559.1 (small nuclear ribonucleoprotein Sm D2-like [Abrus precatorius])

HSP 1 Score: 212 bits (540), Expect = 3.15e-69
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of IVF0012033 vs. NCBI nr
Match: XP_022942850.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212 bits (539), Expect = 4.47e-69
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107
           ENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of IVF0012033 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-52
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           MS+PMEEDT+ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of IVF0012033 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-52
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           MS+PMEEDT+ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of IVF0012033 vs. TAIR 10
Match: AT3G62840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-52
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           MS+PMEEDT+ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of IVF0012033 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-52
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 1   MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 60
           MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 61  VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           VLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of IVF0012033 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-52
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0 

Query: 1   MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 60
           MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 61  VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           VLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

The following BLAST results are available for this feature:
BLAST of IVF0012033 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3SZF81.8e-4587.00Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1[more]
P623161.8e-4587.00Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=... [more]
P623171.8e-4587.00Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV... [more]
Q9VI104.1e-4586.00Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722... [more]
Q187862.7e-4181.00Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239... [more]
BLAST of IVF0012033 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BTT55.5e-53100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE... [more]
A0A5A7TNA05.5e-53100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J1J3W35.5e-53100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC11148316... [more]
A0A0A0KUK45.5e-53100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucumis sativus OX=3659 GN=Csa_4G046730... [more]
A0A6J1EM195.5e-53100.00Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111435... [more]
BLAST of IVF0012033 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146504.11.10e-69100.00small nuclear ribonucleoprotein Sm D2 [Cucumis sativus] >XP_008452073.1 PREDICTE... [more]
KAA0044802.12.56e-69100.00small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662.... [more]
XP_022983472.13.15e-6999.07small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima][more]
XP_027340559.13.15e-6999.07small nuclear ribonucleoprotein Sm D2-like [Abrus precatorius][more]
XP_022942850.14.47e-6998.13small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 ... [more]
BLAST of IVF0012033 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47640.22.1e-5293.52Small nuclear ribonucleoprotein family protein [more]
AT2G47640.32.1e-5293.52Small nuclear ribonucleoprotein family protein [more]
AT3G62840.22.1e-5293.52Small nuclear ribonucleoprotein family protein [more]
AT2G47640.12.7e-5292.66Small nuclear ribonucleoprotein family protein [more]
AT2G47640.42.7e-5292.66Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 25..104
e-value: 5.1E-20
score: 82.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 28..102
e-value: 6.2E-19
score: 67.5
NoneNo IPR availableGENE3D2.30.30.100coord: 15..107
e-value: 6.9E-42
score: 143.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR12777:SF6SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..107
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..107
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 17..106
e-value: 9.06339E-62
score: 180.99
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 20..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012033.2IVF0012033.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0008380 RNA splicing
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0030532 small nuclear ribonucleoprotein complex