IVF0011985 (gene) Melon (IVF77) v1

Overview


Name	IVF0011985
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Splicing factor YJU2
Location	chr08: 26255448 .. 26257791 (+)
RNA-Seq Expression	IVF0011985
Synteny	IVF0011985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCTTCCTATGAGCATCCGGTGCAATACTTGTGGTAATTGCATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGGTGAGGCAAGGGAATCCCTTTTATATTTTTTATATTTTTAACCTAAAAGATGTTTATTCCTTTTGTAATTGATTTTCTGATTTCTCATGTATTTTCTTCCTTTTACTTCAGACATATTTGGGAATTCAAATTTTTAGGTTCTACTTCAAGTGTACCAGATGTTCTGCTGAGCTTACCATTAAAACAGACCCCCAAAACTCAGGAGCCACACGTAATTTTGAACCATGGCGTGAGGAAGATGAAGCTTCTGAGAAGGAGAAACACAAAAGGAATGCGGAAGAGATGGGGGACCCAATGAAATCTTTGGAGAATAGAACCTTGGATTCCAAACGCGAGATGGACATTCTTGCTGCTTTGGATGAGATGAAGTCTATGAAGGTTTTTGTTTTATTACCCTTTGTTTTGTTATTAAGATTCTTGGGTTGTGATTGCTTTCTTGGAGTTGTGGCTTTGAACAAGATTCTAATTTGTTTCTTGATTTTAACATATTCAATTATAAAGTATAGTTTATTTTTTAAAATAACTTGGTGGGTGTTTGTTCTGCAGTTGAGACACGCAACTGTGAGTATTGATTCAATGCTTGTGGCTTTGCAACGAACTGCTGCTTGAAAGGTATGTATAGCACTGCCTTCATGAAAACAGTTTGACATGAAATGTATGTGATAAAATATTGAAAACAGAAGCCTTGATTCTGTCTTTTAATTTCGAGCATCATCTTAACTATTTTAACATATCGAGCAATATACACTTTGCAGGAAAAGAAGTTAGAAGAAGAAGATGAAGCACTGATAAAATCAATAGTCTTCAATGTGAGTTCATTTTTCCTATATGCTTTTCCTCTTCCATTGAAACCATTTACAGTTGTTTGTTTTTGTTTCCTTGGAATTAAAATTTTTCATATGCTTTTGTCAATACCCTTCTGCAGAACTCAACAGTTATGTTAGAAGAATTTCAGATGATGAATTTGATGATGGTAGTCATTCTGTTCAGCATTTGACCAACAATGATATAGCATCGGACTTTAAAGCAAAGGTAATAAAGTAATAAGTGATGTTCTTTTCTATTCCTTATATGAAGGTTTGGATGAATAGTGAACATTAGAGGTGTGAGACATTTGTAAACCGGATAGGGTCTTTGAGAATCTCAACTAATTAGCTTATTCTTAACTCCTCGACATGTTAACTATTTCTGCAGTTTTTAATCAAAGATAAATCTGGTGATTAGGATTAATTTTCAGGGTTGTCAAAACTCAAAAGTAATTTAAATATGCATGAAGATACTATTTGTGCCAACTAAACGTCATTGGAGGCATTCAAACATGCATATGCCTTCTAGAAAAATGCATTTGCCTTTTCTCATAAGCATTTCTATCTAATTGTGAATCTTTAAGTGAAGTATATAGCAAATTGCTACTTGTTTCTTTTTTGTTTGCTAGCATGAACTTCATTTTAGTGTATATCTTAATTTGCGGAGGATAAGAACTAAAAAGTGGAGTATGTTTGAGACTTCTCCCTGCTATTGAATTTTAAAGTATTTGTATTATTTCTTTGCATGAAGATTGCTATTTAAACCTATTTGTAGCATTCAAATTTGAATGTGCCTTTTCTCATTAGCATTTCAATCCATTTGGATTGCAGAAGCAAAGGGTTCCTGAAGGATCTCCTCATGATCCTACCAGTACTTCAACAAAAGCTGGTTTTCTCCATAGCCGCATGGGTGAAGGTACCCTACCTTTATACTTTTCTAAGGAATATATTGGGAAAATGGTGTGAATGTTACAAATATATACCAATCTTTAATTGATTTGTCCCTTCTCTCAATATTGCGAGAAAAAGTTTTTGGTAGAAGCTAGTGCTGGGTATAAAAAGATCTTCTTTATTCTTTTCTCTCTTCATGAAAGGTTACATTTAATAGGAAGGCCTTTCCAATTCAAAAGTGGGAAAATGGTAAAAGAATAGTTAGTAAGGAACTTTTCAACGATTGTGAACGAATGGAAAGCGTTCTTATAGTTCCTTTGGGAGGGGATTCTCTCTACCTCTTATCCCAACCCCTAGGCTGTTTGTTCTCTCCTTTTTAATCCTTTCACGTTTCTTATAAGGAAGATTGTTGCTGAGAAATGAGGGGTTCTTATGGGGAGGAAAATCAAGATGA

mRNA sequence

ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCTTCCTATGAGCATCCGGTGCAATACTTGTGGTAATTGCATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGAACTCAACAGTTATGTTAGAAGAATTTCAGATGATGAATTTGATGATGGTAGTCATTCTGTTCAGCATTTGACCAACAATGATATAGCATCGGACTTTAAAGCAAAGGTAATAAAATTGTTGCTGAGAAATGAGGGGTTCTTATGGGGAGGAAAATCAAGATGA

Coding sequence (CDS)

ATGGGTGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCGTCAAAGCTACCAAGGGTTCGTAGACCCAAAAACCAGCAAATGAAGGTTCGTATGATGCTTCCTATGAGCATCCGGTGCAATACTTGTGGTAATTGCATATACAAGGGCACAAAGTTCAATTCTCGCAAGGAGGACGTCATTGAACTCAACAGTTATGTTAGAAGAATTTCAGATGATGAATTTGATGATGGTAGTCATTCTGTTCAGCATTTGACCAACAATGATATAGCATCGGACTTTAAAGCAAAGGTAATAAAATTGTTGCTGAGAAATGAGGGGTTCTTATGGGGAGGAAAATCAAGATGA

Protein sequence

MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRKEDVIELNSYVRRISDDEFDDGSHSVQHLTNNDIASDFKAKVIKLLLRNEGFLWGGKSR

Homology

[Close]

BLAST of IVF0011985 vs. ExPASy Swiss-Prot
Match: A8WHR3 (Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-19
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG  IYKG KFN+RK
Sbjct: 1  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 61 EDV 64
          E V
Sbjct: 61 ETV 63

[Close]

BLAST of IVF0011985 vs. ExPASy Swiss-Prot
Match: Q9BW85 (Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-19
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG  IYKG KFN+RK
Sbjct: 1  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 61 EDV 64
          E V
Sbjct: 61 ETV 63

[Close]

BLAST of IVF0011985 vs. ExPASy Swiss-Prot
Match: Q9D6J3 (Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-19
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          M ERKVLNKYYPPDFDPSK+P+++ PK++Q  VR+M P ++RC TCG  IYKG KFN+RK
Sbjct: 1  MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK 60

Query: 61 EDV 64
          E V
Sbjct: 61 ETV 63

[Close]

BLAST of IVF0011985 vs. ExPASy Swiss-Prot
Match: Q54WR5 (Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.9e-17
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          MGERKV++KYYPPDFDPSK+ +++  +    KV  MLPMSIRCNTCG  I +GTKFN++K
Sbjct: 1  MGERKVISKYYPPDFDPSKVAKIKVKRPTFTKVTTMLPMSIRCNTCGEYIGRGTKFNAKK 60

Query: 61 EDV 64
          E V
Sbjct: 61 ETV 63

[Close]

BLAST of IVF0011985 vs. ExPASy Swiss-Prot
Match: Q9P7C5 (Splicing factor YJU2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf16 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 9.2e-14
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQ-----QMKVRMMLPMSIRCNTCGNCIYKGTK 60
          M ERKVLNKY PPD+DPS  P  ++ K Q     ++ VR+M P S+RC+TCG  IYKG K
Sbjct: 1  MSERKVLNKYIPPDYDPSIRPPKKKKKFQGPNGGKLTVRLMTPFSMRCHTCGEYIYKGKK 60

Query: 61 FNSRKE 62
          FN+RKE
Sbjct: 61 FNARKE 66

[Close]

BLAST of IVF0011985 vs. ExPASy TrEMBL
Match: A0A5A7VD47 (Coiled-coil domain-containing protein 94-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00660 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.4e-41
Identity = 99/170 (58.24%), Postives = 100/170 (58.82%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60

Query: 61  EDVIE------------------------------------------------------- 101
           EDVI+                                                       
Sbjct: 61  EDVIDPQNSGATRNFEPWREEDEASEKEKHKRNAEEMGDPMKSLENRTLDSKREMDILAA 120

[Close]

BLAST of IVF0011985 vs. ExPASy TrEMBL
Match: A0A5D3E0P2 (Coiled-coil domain-containing protein 94-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00240 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.7e-40
Identity = 99/176 (56.25%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60

Query: 61  EDVIE------------------------------------------------------- 101
           EDVI+                                                       
Sbjct: 61  EDVIDPQNSDYVVESGATRNFEPWREEDEASEKEKHKRNAEEMGDPMKSLENRTLDSKRE 120

[Close]

BLAST of IVF0011985 vs. ExPASy TrEMBL
Match: A0A5A7SUI1 (Splicing factor YJU2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00300 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.8e-35
Identity = 97/214 (45.33%), Postives = 101/214 (47.20%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVIE------------------------------------------------------- 105
           EDVI+                                                       
Sbjct: 61  EDVIDPQNSDYVVESGATRNFEPWREEDEASEKEKHKRNAEEMGDPMKSLENRTLDSKRE 120

[Close]

BLAST of IVF0011985 vs. ExPASy TrEMBL
Match: A0A1S4E548 (coiled-coil domain-containing protein 94 homolog OS=Cucumis melo OX=3656 GN=LOC107990321 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60

Query: 61 EDVI 65
          EDVI
Sbjct: 61 EDVI 64

[Close]

BLAST of IVF0011985 vs. ExPASy TrEMBL
Match: A0A0B0MV50 (Splicing factor YJU2 OS=Gossypium arboreum OX=29729 GN=LOC108474488 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.0e-28
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61 EDVI 65
          EDVI
Sbjct: 61 EDVI 64

[Close]

BLAST of IVF0011985 vs. NCBI nr
Match: KAA0065558.1 (coiled-coil domain-containing protein 94-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 4.08e-51
Identity = 99/170 (58.24%), Postives = 100/170 (58.82%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60

Query: 61  EDVIE------------------------------------------------------- 100
           EDVI+                                                       
Sbjct: 61  EDVIDPQNSGATRNFEPWREEDEASEKEKHKRNAEEMGDPMKSLENRTLDSKREMDILAA 120

[Close]

BLAST of IVF0011985 vs. NCBI nr
Match: TYK29261.1 (coiled-coil domain-containing protein 94-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (438), Expect = 3.73e-50
Identity = 99/176 (56.25%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60

Query: 61  EDVIE------------------------------------------------------- 100
           EDVI+                                                       
Sbjct: 61  EDVIDPQNSDYVVESGATRNFEPWREEDEASEKEKHKRNAEEMGDPMKSLENRTLDSKRE 120

[Close]

BLAST of IVF0011985 vs. NCBI nr
Match: KAA0032865.1 (coiled-coil domain-containing protein 94-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 1.15e-43
Identity = 97/214 (45.33%), Postives = 101/214 (47.20%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVIE------------------------------------------------------- 104
           EDVI+                                                       
Sbjct: 61  EDVIDPQNSDYVVESGATRNFEPWREEDEASEKEKHKRNAEEMGDPMKSLENRTLDSKRE 120

[Close]

BLAST of IVF0011985 vs. NCBI nr
Match: KAE8637283.1 (hypothetical protein CSA_004535 [Cucumis sativus])

HSP 1 Score: 150 bits (379), Expect = 5.57e-43
Identity = 95/192 (49.48%), Postives = 96/192 (50.00%), Query Frame = 0


Query: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
           MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGN IYKGTKFNSRK
Sbjct: 1   MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNYIYKGTKFNSRK 60

Query: 61  EDVIE------------------------------------------------------- 100
           EDVI+                                                       
Sbjct: 61  EDVIDPQNSDYVVESGATRNFEPWREEDEASEKEKHKRNAEEMGDAMKSLENRTLDSKRE 120

[Close]

BLAST of IVF0011985 vs. NCBI nr
Match: XP_016903347.1 (PREDICTED: coiled-coil domain-containing protein 94 homolog, partial [Cucumis melo])

HSP 1 Score: 138 bits (347), Expect = 1.46e-39
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60

Query: 61 EDVI 64
          EDVI
Sbjct: 61 EDVI 64

[Close]

BLAST of IVF0011985 vs. TAIR 10
Match: AT1G17130.2 (Family of unknown function (DUF572) )

HSP 1 Score: 125.2 bits (313), Expect = 3.6e-29
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGN IYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTKFNSRK 60

Query: 61 EDVIELN 68
          EDVI  N
Sbjct: 61 EDVIGEN 67

[Close]

BLAST of IVF0011985 vs. TAIR 10
Match: AT1G17130.1 (Family of unknown function (DUF572) )

HSP 1 Score: 124.8 bits (312), Expect = 4.6e-29
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          MGERKVLNKYYPPDFDP+KL R+RRPKNQQ+KVRMMLPMS+RC TCGN IYKGTKFNSRK
Sbjct: 1  MGERKVLNKYYPPDFDPAKLQRLRRPKNQQIKVRMMLPMSVRCGTCGNYIYKGTKFNSRK 60

Query: 61 EDVI 65
          EDVI
Sbjct: 61 EDVI 64

[Close]

BLAST of IVF0011985 vs. TAIR 10
Match: AT3G43250.1 (Family of unknown function (DUF572) )

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-23
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          MGERK LNKYYPPDFDP K+ R+++PKNQQ K+R MLP+ +RCNTCGN + +GTKFN R+
Sbjct: 1  MGERKNLNKYYPPDFDPKKIHRIKKPKNQQKKIRFMLPVRVRCNTCGNYMSEGTKFNCRQ 60

Query: 61 EDVI 65
          EDVI
Sbjct: 61 EDVI 64

[Close]

BLAST of IVF0011985 vs. TAIR 10
Match: AT2G32050.1 (Family of unknown function (DUF572) )

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-22
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MGERKVLNKYYPPDFDPSKLPRVRRPKNQQMKVRMMLPMSIRCNTCGNCIYKGTKFNSRK 60
          MGERK LNKYYPP+FDP ++PR+R+PKNQQ K+R M+P+ IRCNTCGN + +GTK N R+
Sbjct: 1  MGERKGLNKYYPPNFDPKQIPRIRKPKNQQRKIRSMVPLRIRCNTCGNYMSEGTKINCRE 60

Query: 61 EDVI 65
          E+VI
Sbjct: 61 ENVI 64

[Close]

BLAST of IVF0011985 vs. TAIR 10
Match: AT2G29430.1 (Family of unknown function (DUF572) )

HSP 1 Score: 42.7 bits (99), Expect = 2.3e-04
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 35 MMLPMSIRCNTCGNCIYKGTKFNSRKEDVI 65
          + LPM ++CN C N + KGTKF SR EDVI
Sbjct: 8  LSLPMRLQCNNCDNIMSKGTKFTSRVEDVI 37

The following BLAST results are available for this feature:

BLAST of IVF0011985 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8WHR3	1.9e-19	66.67	Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1	[more]
Q9BW85	1.9e-19	66.67	Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1	[more]
Q9D6J3	1.9e-19	66.67	Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1	[more]
Q54WR5	8.9e-17	63.49	Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1	[more]
Q9P7C5	9.2e-14	57.58	Splicing factor YJU2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2...	[more]

BLAST of IVF0011985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VD47	5.4e-41	58.24	Coiled-coil domain-containing protein 94-like protein OS=Cucumis melo var. makuw...	[more]
A0A5D3E0P2	2.7e-40	56.25	Coiled-coil domain-containing protein 94-like protein OS=Cucumis melo var. makuw...	[more]
A0A5A7SUI1	9.8e-35	45.33	Splicing factor YJU2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G...	[more]
A0A1S4E548	1.6e-29	100.00	coiled-coil domain-containing protein 94 homolog OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0B0MV50	3.0e-28	98.44	Splicing factor YJU2 OS=Gossypium arboreum OX=29729 GN=LOC108474488 PE=3 SV=1	[more]

BLAST of IVF0011985 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065558.1	4.08e-51	58.24	coiled-coil domain-containing protein 94-like protein [Cucumis melo var. makuwa]	[more]
TYK29261.1	3.73e-50	56.25	coiled-coil domain-containing protein 94-like protein [Cucumis melo var. makuwa]	[more]
KAA0032865.1	1.15e-43	45.33	coiled-coil domain-containing protein 94-like protein [Cucumis melo var. makuwa]	[more]
KAE8637283.1	5.57e-43	49.48	hypothetical protein CSA_004535 [Cucumis sativus]	[more]
XP_016903347.1	1.46e-39	100.00	PREDICTED: coiled-coil domain-containing protein 94 homolog, partial [Cucumis me...	[more]

BLAST of IVF0011985 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17130.2	3.6e-29	86.57	Family of unknown function (DUF572)	[more]
AT1G17130.1	4.6e-29	89.06	Family of unknown function (DUF572)	[more]
AT3G43250.1	3.8e-23	70.31	Family of unknown function (DUF572)	[more]
AT2G32050.1	5.5e-22	67.19	Family of unknown function (DUF572)	[more]
AT2G29430.1	2.3e-04	60.00	Family of unknown function (DUF572)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007590	Saf4/Yju2 protein	PFAM	PF04502	DUF572	coord: 9..65 e-value: 4.7E-29 score: 102.1
IPR007590	Saf4/Yju2 protein	PANTHER	PTHR12111	SPLICING FACTOR YJU2	coord: 1..64
None	No IPR available	PANTHER	PTHR12111:SF7	BNAA02G14200D PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011985.2	IVF0011985.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000349	generation of catalytic spliceosome for first transesterification step
cellular_component	GO:0071006	U2-type catalytic step 1 spliceosome
molecular_function	GO:0046872	metal ion binding