IVF0011941 (gene) Melon (IVF77) v1

Overview
NameIVF0011941
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 6228222 .. 6228464 (-)
RNA-Seq ExpressionIVF0011941
SyntenyIVF0011941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAAGAGTTCTTATAACAAAATTAAAACAATTATAAACTCTATGGCCATCAATAGTTCAGAATGGACAAATGATGGTTTTAGTTCTTGTCAAGGAGGAAGAGGAAATATTGAAGAAGGAAATGACAAAAATGTAGTGGTGGCATTCCAAGGACAAGTGACCGTGAAGAACAAACTGTTACAATCAATGGCTTTATCGCAAGTTGATGCCACAAGTAGTTCATTTCAAGCGGTAAAGTAG

mRNA sequence

ATGTTAAAGAGTTCTTATAACAAAATTAAAACAATTATAAACTCTATGGCCATCAATAGTTCAGAATGGACAAATGATGGTTTTAGTTCTTGTCAAGGAGGAAGAGGAAATATTGAAGAAGGAAATGACAAAAATGTAGTGGTGGCATTCCAAGGACAAGTGACCGTGAAGAACAAACTGTTACAATCAATGGCTTTATCGCAAGTTGATGCCACAAGTAGTTCATTTCAAGCGGTAAAGTAG

Coding sequence (CDS)

ATGTTAAAGAGTTCTTATAACAAAATTAAAACAATTATAAACTCTATGGCCATCAATAGTTCAGAATGGACAAATGATGGTTTTAGTTCTTGTCAAGGAGGAAGAGGAAATATTGAAGAAGGAAATGACAAAAATGTAGTGGTGGCATTCCAAGGACAAGTGACCGTGAAGAACAAACTGTTACAATCAATGGCTTTATCGCAAGTTGATGCCACAAGTAGTTCATTTCAAGCGGTAAAGTAG

Protein sequence

MLKSSYNKIKTIINSMAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKLLQSMALSQVDATSSSFQAVK
Homology
BLAST of IVF0011941 vs. ExPASy TrEMBL
Match: A0A5A7SQQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00940 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.2e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 16 MAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKLLQSMALSQVDATSSS 75
          MAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKLLQSMALSQVDATSSS
Sbjct: 1  MAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKLLQSMALSQVDATSSS 60

Query: 76 FQA 79
          FQA
Sbjct: 61 FQA 63

BLAST of IVF0011941 vs. ExPASy TrEMBL
Match: A0A5D3CSC7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00360 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 4   SSYNKIKTIINSMAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKLLQS 63
           SSYN+I   ++S+AIN+ EW +DGF S +GGRG  EEG D+NV+V  QGQ+T  N LLQ 
Sbjct: 25  SSYNQINETLDSIAINNEEWDDDGFDSHRGGRGKNEEGLDRNVMVVPQGQMTAMNNLLQL 84

Query: 64  MALSQVDATSSSFQAVK 81
           M   QV+A SSSFQ+VK
Sbjct: 85  MVFLQVNAASSSFQSVK 101

BLAST of IVF0011941 vs. ExPASy TrEMBL
Match: A0A5A7SYS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00380 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 0

Query: 1   MLKSSYNKIKTIINSMAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKL 60
           MLKSS N+IK  ++SM  N+ E  +D F S + GRG  EEG D N VVA QGQ+TV N L
Sbjct: 32  MLKSSCNQIKATLDSMTNNNEECDDDDFCSHRRGRGKNEEGLDGNEVVALQGQMTVMNNL 91

Query: 61  LQSMALSQVDATSSSFQAVK 81
           LQS+ LSQV+  SSSFQ VK
Sbjct: 92  LQSIVLSQVNVRSSSFQVVK 111

BLAST of IVF0011941 vs. ExPASy TrEMBL
Match: A0A5D3E1V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001000 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.7e-11
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1  MLKSSYNKIKTIINSMAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKL 60
          MLKSS N+IK  ++SM  N+ E  +D F S + GRG  EEG D N VVA QGQ+   N L
Sbjct: 1  MLKSSCNQIKASLDSMTNNNEECDDDDFCSHRRGRGKNEEGLDGNEVVALQGQMAAMNNL 60

Query: 61 LQSMALSQVDATSSSFQAVK 81
          LQS+ LSQV+  SSSFQ VK
Sbjct: 61 LQSIVLSQVNVRSSSFQVVK 80

BLAST of IVF0011941 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1   MLKSSYNKIKTIINSMAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKL 60
           ML+SSYN+IK  ++SM+ NS EW + GF S    RG  +EG DK+VVV  QGQ+   N L
Sbjct: 59  MLRSSYNQIKATLDSMSNNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNL 118

Query: 61  LQSMALSQVDATSSSFQAVK 81
           LQSM LSQV+A ++   AVK
Sbjct: 119 LQSMTLSQVNAANNYIHAVK 136

BLAST of IVF0011941 vs. NCBI nr
Match: KAA0032753.1 (hypothetical protein E6C27_scaffold853G00960 [Cucumis melo var. makuwa] >TYJ98785.1 hypothetical protein E5676_scaffold156G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 7.37e-34
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 16 MAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKLLQSMALSQVDATSSS 75
          MAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKLLQSMALSQVDATSSS
Sbjct: 1  MAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKLLQSMALSQVDATSSS 60

Query: 76 FQA 78
          FQA
Sbjct: 61 FQA 63

BLAST of IVF0011941 vs. NCBI nr
Match: KAA0038192.1 (hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK14793.1 hypothetical protein E5676_scaffold1610G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.78e-18
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 4   SSYNKIKTIINSMAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKLLQS 63
           SSYN+I   ++S+AIN+ EW +DGF S +GGRG  EEG D+NV+V  QGQ+T  N LLQ 
Sbjct: 25  SSYNQINETLDSIAINNEEWDDDGFDSHRGGRGKNEEGLDRNVMVVPQGQMTAMNNLLQL 84

Query: 64  MALSQVDATSSSFQAVK 80
           M   QV+A SSSFQ+VK
Sbjct: 85  MVFLQVNAASSSFQSVK 101

BLAST of IVF0011941 vs. NCBI nr
Match: KAA0035763.1 (hypothetical protein E6C27_scaffold403G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 6.01e-17
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 0

Query: 1   MLKSSYNKIKTIINSMAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKL 60
           MLKSS N+IK  ++SM  N+ E  +D F S + GRG  EEG D N VVA QGQ+TV N L
Sbjct: 32  MLKSSCNQIKATLDSMTNNNEECDDDDFCSHRRGRGKNEEGLDGNEVVALQGQMTVMNNL 91

Query: 61  LQSMALSQVDATSSSFQAVK 80
           LQS+ LSQV+  SSSFQ VK
Sbjct: 92  LQSIVLSQVNVRSSSFQVVK 111

BLAST of IVF0011941 vs. NCBI nr
Match: TYK29856.1 (hypothetical protein E5676_scaffold208G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 8.77e-16
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1  MLKSSYNKIKTIINSMAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKL 60
          MLKSS N+IK  ++SM  N+ E  +D F S + GRG  EEG D N VVA QGQ+   N L
Sbjct: 1  MLKSSCNQIKASLDSMTNNNEECDDDDFCSHRRGRGKNEEGLDGNEVVALQGQMAAMNNL 60

Query: 61 LQSMALSQVDATSSSFQAVK 80
          LQS+ LSQV+  SSSFQ VK
Sbjct: 61 LQSIVLSQVNVRSSSFQVVK 80

BLAST of IVF0011941 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.39e-14
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1   MLKSSYNKIKTIINSMAINSSEWTNDGFSSCQGGRGNIEEGNDKNVVVAFQGQVTVKNKL 60
           ML+SSYN+IK  ++SM+ NS EW + GF S    RG  +EG DK+VVV  QGQ+   N L
Sbjct: 59  MLRSSYNQIKATLDSMSNNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNL 118

Query: 61  LQSMALSQVDATSSSFQAVK 80
           LQSM LSQV+A ++   AVK
Sbjct: 119 LQSMTLSQVNAANNYIHAVK 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SQQ96.2e-25100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CSC71.4e-1358.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SYS56.0e-1258.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E1V88.7e-1156.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6F91.9e-1053.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0032753.17.37e-34100.00hypothetical protein E6C27_scaffold853G00960 [Cucumis melo var. makuwa] >TYJ9878... [more]
KAA0038192.11.78e-1858.44hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK1479... [more]
KAA0035763.16.01e-1758.75hypothetical protein E6C27_scaffold403G00380 [Cucumis melo var. makuwa][more]
TYK29856.18.77e-1656.25hypothetical protein E5676_scaffold208G001000 [Cucumis melo var. makuwa][more]
KGN44484.11.39e-1453.75hypothetical protein Csa_015918 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011941.1IVF0011941.1mRNA