IVF0011929 (gene) Melon (IVF77) v1

Overview
NameIVF0011929
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPolyamine-modulated factor 1-binding protein
Locationchr04: 2805400 .. 2807186 (-)
RNA-Seq ExpressionIVF0011929
SyntenyIVF0011929
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTTCCGAATCAAAACCAAATGATCAGCTGATTCCTTTGCCGGAACCTGAATCGTTGCCGGAACCTGAATCCCAGCTCTCAGCTCTCATTTTCGGTACGCTTCTCCGCTTCTCTATCCGCTCTCTAATGCACACATTCAAAAGGCACGCTAAGGCGCTAACTACTGCCCTTTCTCGCAATGAAATCTGCCTGCCTGCCTGACATTCTATAGCGAGGTTGTTAGCTAGATTTTGTCGCACCTACTGTGAAAAATCGGCATTGTTAATCGTTTTCTGCTTATGCTTATATACTTAAAGAAGTAAGAAATGCTATAACATCAAACTCTAGGTAGCTGTTGAAATTTCGTCTCGATTGCATTCTTAAATGTTCGGCGTAGATTTGATTGGAAACACCGATTAGGTTAAGTTTCTTCGCTTCTGAATCTATGAAATCGAGTAGGACGAAATCCGATATTGATAGAGGTTGTTTGTTTCAGACAAAATTTTGAACGAATCGGCATTGTTAATTAGCTGCAGTTCTTAAAACGAGGAATTTGTATTCTTAAACTTAGGACTCTAATTTCTCCAAATGGTGGTAATTTGTTCTTAACAACAATTGAATCTCAGTATTCACGTTTTTTGATTCTACCTCCATTTATGTGTAATTCATCTTTTATTTGACTGTCTTTCACTTATCCGTTATTTTTAAGTTGTGTAATTCTAGAAGGAATTTTATTAACCATCTTGCGAGAAAGATTGTTTCTCTGCTAATTTATAGGCTTATAAATCATAGCCGAACATCTACGAAAACTTCAAAGCCTTGAAACAAGCAATATCGGTATTCAAAACTAGCCGTGCTTGCTTCTTTCACAATCATTTTTTCGTTTTTCATTTTCTTCTTAGCATGTTGGTGTCTATCACGCCCTGAGCTTTTTGGATCGGTCTGTGCCATTCAATTAGATAACGCTGTTTTTTTTATATTTTTACATGCGCGCAGATATATCACAACAGGCTCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGGTTGGTTAATTATGAACACTAAGTCGATTTTTTTTATAAAAATAATATTTTAATTTTAATTCGAGGGAAATGACCTTAAAGTGATAAGGGGCTAGCGGGGAGAGTGAAATTTTCGACTTGCGAACTTAATGCTTGATAAAATTGATTTGAAAAGCATGAACTCTTCAAAATAAATCATGGAGTTGAAGAAAAGCAAATTGTAAGATGACATGAGGATTGCTTCTATGCCTAAATTTCAAGTTTTCTGCTCTCAATAAATTCGATAAAATAAAAAAAGATTGTTCCAGCGAATGATGACTATTTTACATGCGGAGCCAATTTAAAGATATGTTTATAAAGTACTTATTTTATCTACTCTTTTTTTCTCTTCTTCACAACAGAGGGGATTACCCCAGTTGGCAAATATATACATATACTCTAATAAATTATCTGTTTTTGTCACCACCAACAATCTATATTCTCATTCCTCATCTTCGAGTCATTTTCTGAATCTTCTACTCCTAGTGATTCGAATTAATTCTATAAAACGTAATAATGGCACGTCTACGTCCTCATACTAACCTCAGTCTTCTCGTTTTCAACTGTTTGCAGTGAAATCGATCAAAACGCTGTTGGAATAGTGGAAGACATAGAAAAGTGCAGGGGTTCTGCTCTTGACAGAAAGGGAGTGTTGGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAACCGAGGAGGGGGAACGCTGTAA

mRNA sequence

ATGGCAACTTCCGAATCAAAACCAAATGATCAGCTGATTCCTTTGCCGGAACCTGAATCGTTGCCGGAACCTGAATCCCAGCTCTCAGCTCTCATTTTCGATATATCACAACAGGCTCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGTGAAATCGATCAAAACGCTGTTGGAATAGTGGAAGACATAGAAAAGTGCAGGGGTTCTGCTCTTGACAGAAAGGGAGTGTTGGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAACCGAGGAGGGGGAACGCTGTAA

Coding sequence (CDS)

ATGGCAACTTCCGAATCAAAACCAAATGATCAGCTGATTCCTTTGCCGGAACCTGAATCGTTGCCGGAACCTGAATCCCAGCTCTCAGCTCTCATTTTCGATATATCACAACAGGCTCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGTGAAATCGATCAAAACGCTGTTGGAATAGTGGAAGACATAGAAAAGTGCAGGGGTTCTGCTCTTGACAGAAAGGGAGTGTTGGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAACCGAGGAGGGGGAACGCTGTAA

Protein sequence

MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL
Homology
[Close]
BLAST of IVF0011929 vs. ExPASy TrEMBL
Match: A0A5A7TBQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007070 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.8e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 105
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]
BLAST of IVF0011929 vs. ExPASy TrEMBL
Match: A0A1S3CR82 (uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.8e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 105
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]
BLAST of IVF0011929 vs. ExPASy TrEMBL
Match: A0A0A0LJE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPE ESLPE ESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 105
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGG L
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGML 104

[Close]
BLAST of IVF0011929 vs. ExPASy TrEMBL
Match: A0A6J1FEZ1 (uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC111443468 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.1e-40
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLP--EPESQLSALIFDISQQAQGAMENMLRMISEIDQNAV 60
           MA+SESKPNDQLIPLPE ESLP  E ESQLS L+F ISQQAQGAMENMLRMISEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 105
           GI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN-GGGTL 105

[Close]
BLAST of IVF0011929 vs. ExPASy TrEMBL
Match: A0A6J1IGC1 (uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPES--QLSALIFDISQQAQGAMENMLRMISEIDQNAV 60
           MA+SESKP DQLIPLPE ESL E ES  QLS L+F ISQQAQGAMENMLRMISEIDQNAV
Sbjct: 1   MASSESKPTDQLIPLPESESLSESESETQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 105
           GI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN-GGGTL 105

[Close]
BLAST of IVF0011929 vs. NCBI nr
Match: KAA0038779.1 (uncharacterized protein E6C27_scaffold92G003330 [Cucumis melo var. makuwa] >TYK31399.1 uncharacterized protein E5676_scaffold455G007070 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 1.93e-64
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]
BLAST of IVF0011929 vs. NCBI nr
Match: XP_008466349.1 (PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo])

HSP 1 Score: 200 bits (508), Expect = 2.12e-64
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

[Close]
BLAST of IVF0011929 vs. NCBI nr
Match: XP_004136463.2 (uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetical protein Csa_001898 [Cucumis sativus])

HSP 1 Score: 189 bits (479), Expect = 5.62e-60
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MATSESKPNDQLIPLPE ESLPE ESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGG L
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGML 104

[Close]
BLAST of IVF0011929 vs. NCBI nr
Match: XP_022937053.1 (uncharacterized protein LOC111443468 [Cucurbita moschata])

HSP 1 Score: 174 bits (442), Expect = 2.47e-54
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPES--QLSALIFDISQQAQGAMENMLRMISEIDQNAV 60
           MA+SESKPNDQLIPLPE ESLPE ES  QLS L+F ISQQAQGAMENMLRMISEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104
           GI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGGTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN-GGGTL 105

[Close]
BLAST of IVF0011929 vs. NCBI nr
Match: KAG7024488.1 (hypothetical protein SDJN02_13304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (440), Expect = 5.31e-54
Identity = 96/108 (88.89%), Postives = 99/108 (91.67%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPES----QLSALIFDISQQAQGAMENMLRMISEIDQN 60
           MA+SESKPNDQLIPLPE ESLPE ES    QLS L+F ISQQAQGAMENMLRMISEIDQN
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESESQLSVLLFHISQQAQGAMENMLRMISEIDQN 60

Query: 61  AVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104
           AVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGGTL
Sbjct: 61  AVGILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN-GGGTL 107

[Close]
BLAST of IVF0011929 vs. TAIR 10
Match: AT5G25570.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-21
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MA S S+ + QL+    P    + +S L++L+F++SQQ Q  MENML+M+ EIDQN+VGI
Sbjct: 1   MAESPSQSDAQLVAHQSPGQ--QADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGG 102
            E+IEK +  A+++K +LEEEK QFQ+AAYT+LDML+N  G
Sbjct: 61  KEEIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]
BLAST of IVF0011929 vs. TAIR 10
Match: AT5G25570.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-21
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 0 

Query: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60
           MA S S+ + QL+    P    + +S L++L+F++SQQ Q  MENML+M+ EIDQN+VGI
Sbjct: 1   MAESPSQSDAQLVAHQSPGQ--QADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGG 102
            E+IEK +  A+++K +LEEEK QFQ+AAYT+LDML+N  G
Sbjct: 61  KEEIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]
BLAST of IVF0011929 vs. TAIR 10
Match: AT5G25570.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 88.2 bits (217), Expect = 4.2e-18
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 0 

Query: 32  IFDISQQAQGAMENMLRMISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYT 91
           I ++SQQ Q  MENML+M+ EIDQN+VGI E+IEK +  A+++K +LEEEK QFQ+AAYT
Sbjct: 62  IAEMSQQVQMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYT 121

Query: 92  VLDMLNNRGG 102
           +LDML+N  G
Sbjct: 122 ILDMLSNSRG 131

The following BLAST results are available for this feature:
BLAST of IVF0011929 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011929 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TBQ06.8e-48100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CR826.8e-48100.00uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=... [more]
A0A0A0LJE01.6e-4496.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1[more]
A0A6J1FEZ13.1e-4090.57uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC1114434... [more]
A0A6J1IGC11.3e-3888.68uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676... [more]
BLAST of IVF0011929 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038779.11.93e-64100.00uncharacterized protein E6C27_scaffold92G003330 [Cucumis melo var. makuwa] >TYK3... [more]
XP_008466349.12.12e-64100.00PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo][more]
XP_004136463.25.62e-6096.15uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetica... [more]
XP_022937053.12.47e-5490.57uncharacterized protein LOC111443468 [Cucurbita moschata][more]
KAG7024488.15.31e-5488.89hypothetical protein SDJN02_13304 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of IVF0011929 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G25570.13.1e-2152.48unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
AT5G25570.23.1e-2152.48unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
AT5G25570.34.2e-1861.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR36800POLYAMINE-MODULATED FACTOR 1-BINDING PROTEINcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011929.2IVF0011929.2mRNA