IVF0011922 (gene) Melon (IVF77) v1

Overview
NameIVF0011922
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr11: 16610651 .. 16611227 (-)
RNA-Seq ExpressionIVF0011922
SyntenyIVF0011922
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAGGGTCCAAAATTAACATTTGTTAGGAAACAATTAAAACTCAACTCAAACTTACAAAAAAAATGGTAAGAAGCAAAAAATAAGCTTGGTGGCTCAAATGGCTTGGCTAGGAAGAAGAACTGGCTAAGTGACTCGGCTTGGCTAGGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG

mRNA sequence

ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG

Coding sequence (CDS)

ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG

Protein sequence

MIKGPKLTFEADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGGSGVGCAVRWLTTGRAIAAAAA
Homology
[Close]
BLAST of IVF0011922 vs. ExPASy TrEMBL
Match: A0A5A7V8Y5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005210 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.0e-60
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0 

Query: 10  EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLAL 69
           EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLAL
Sbjct: 239 EADAARLGSNRRTVWLGSGGPCAHVAWQLLLIERSLTAVSDRHVTEGSGPTRLDGTHLAL 298

Query: 70  TVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGG 129
           TVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRDTDEVEH WLPG+RIDGEEG 
Sbjct: 299 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRKGRDTDEVEHDWLPGLRIDGEEGS 358

Query: 130 S 131
           S
Sbjct: 359 S 359

[Close]
BLAST of IVF0011922 vs. NCBI nr
Match: KAA0062151.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (609), Expect = 2.00e-75
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0 

Query: 10  EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLAL 69
           EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLAL
Sbjct: 239 EADAARLGSNRRTVWLGSGGPCAHVAWQLLLIERSLTAVSDRHVTEGSGPTRLDGTHLAL 298

Query: 70  TVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGG 129
           TVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRDTDEVEH WLPG+RIDGEEG 
Sbjct: 299 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRKGRDTDEVEHDWLPGLRIDGEEGS 358

The following BLAST results are available for this feature:
BLAST of IVF0011922 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011922 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V8Y55.0e-6094.21Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0011922 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062151.12.00e-7594.21retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of IVF0011922 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011922.1IVF0011922.1mRNA