IVF0011908 (gene) Melon (IVF77) v1

Overview
NameIVF0011908
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr11: 8436268 .. 8436489 (-)
RNA-Seq ExpressionIVF0011908
SyntenyIVF0011908
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGACTGGTTGGAAGCGGAAGAAGGCGTCGTTGGAGGCGAACGAAGGCGTCGTTGGAGGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAA

mRNA sequence

ATGACGACTGGTTGGAAGCGGAAGAAGGCGTCGTTGGAGGCGAACGAAGGCGTCGTTGGAGGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAA

Coding sequence (CDS)

ATGACGACTGGTTGGAAGCGGAAGAAGGCGTCGTTGGAGGCGAACGAAGGCGTCGTTGGAGGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTCGTGCGGAAGAAGGCGTTCTTGAGAATGGTAAGGCGGAAGAAGGGAGAAAATCGTGGAGAATATATTGGAGAGGGAGAAAATCACGCAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTGTTTTTAA

Protein sequence

MTTGWKRKKASLEANEGVVGGGRRRRAEEGVVRKKAFLRMVRRKKGENRGEYIGEGENHADEWRRRNSRQDCF
Homology
BLAST of IVF0011908 vs. ExPASy TrEMBL
Match: A0A5A7TUB6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00040 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MTTGWKRKKASLEANEGVVGGGRRRRAEEGVVRKKAFLRMVRRKKGENRGEYIGE 56
          MTTGW+RKKASLEANEGVVGGG RRRAEEGVVRKKAFLRM       N+ E++G+
Sbjct: 22 MTTGWRRKKASLEANEGVVGGGTRRRAEEGVVRKKAFLRMEYLWSSVNQKEHLGQ 76

BLAST of IVF0011908 vs. ExPASy TrEMBL
Match: A0A5A7SHI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001610 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 1   MTTGWKRKKASLEANEGVVGGGRRRRAEEGVV 33
           MTTGW++KKASLEA EG+VGGGRRRRAEEGV+
Sbjct: 99  MTTGWRQKKASLEAKEGIVGGGRRRRAEEGVL 130

BLAST of IVF0011908 vs. NCBI nr
Match: KAA0047052.1 (hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 5.71e-16
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MTTGWKRKKASLEANEGVVGGGRRRRAEEGVVRKKAFLRMVRRKKGENRGEYIGE 55
          MTTGW+RKKASLEANEGVVGGG RRRAEEGVVRKKAFLRM       N+ E++G+
Sbjct: 22 MTTGWRRKKASLEANEGVVGGGTRRRAEEGVVRKKAFLRMEYLWSSVNQKEHLGQ 76

BLAST of IVF0011908 vs. NCBI nr
Match: KAA0025306.1 (hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 2.93e-08
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 1   MTTGWKRKKASLEANEGVVGGGRRRRAEEGVV 32
           MTTGW++KKASLEA EG+VGGGRRRRAEEGV+
Sbjct: 99  MTTGWRQKKASLEAKEGIVGGGRRRRAEEGVL 130

BLAST of IVF0011908 vs. NCBI nr
Match: TYK08201.1 (40S ribosomal protein S15-4 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 7.23e-04
Identity = 32/55 (58.18%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 4   GWKRKKASLE--------ANEGVVGGGRRRR---------AEEGVVRKKAFLRMV 41
           GW+RKK  LE        A EGVVGG RRRR         AEEGVVRKKAFLRM 
Sbjct: 335 GWRRKKLWLETEDDDWLEAEEGVVGGERRRRWKRKKASLEAEEGVVRKKAFLRMA 389

BLAST of IVF0011908 vs. NCBI nr
Match: TYJ97125.1 (S-antigen protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 44.7 bits (104), Expect = 7.37e-04
Identity = 26/41 (63.41%), Postives = 27/41 (65.85%), Query Frame = 0

Query: 1  MTTGWKRKKASLEANEGVVGGGRRR---------RAEEGVV 32
          M TGW+RKK  LEA EGVVGGGRRR          AEEGVV
Sbjct: 1  MMTGWRRKKLWLEAEEGVVGGGRRRGWRLKKAWLEAEEGVV 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TUB62.7e-1174.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SHI42.2e-0584.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0047052.15.71e-1674.55hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa][more]
KAA0025306.12.93e-0884.38hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa][more]
TYK08201.17.23e-0458.1840S ribosomal protein S15-4 [Cucumis melo var. makuwa][more]
TYJ97125.17.37e-0463.41S-antigen protein-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011908.1IVF0011908.1mRNA