IVF0011872 (gene) Melon (IVF77) v1

Overview
NameIVF0011872
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description30S ribosomal protein S13
Locationchr09: 11312789 .. 11314654 (+)
RNA-Seq ExpressionIVF0011872
SyntenyIVF0011872
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGATTGAAACCGAAGGCAGAAAGCGGTGGGAGCCTGAGTTGAATCATAATCCAAGTTTGTGTTCGTAATGTGCTGATCGACAAGTTGGAACAGAGGACATCATGGCGCAAACTTTAGCAATCCCACTGGCTCCTTCACTCTCCCTTATCTGCAATTCTCGCAACTCCAATCCTCTATCTAACACTCTCTCCTTCCCCATTTCAAACCCTCAGGTAATTTTTCTCTTCAATTTTACCCTCTTCCTTTCAGTTTCTTCGGTTCTACAATTTCCATTTCCTTGTGCATTTTTTAGGATGTGCAGGGGCTTTCCCCGCTCCAAGTTTGTTTTTGTATTCTCTTAGTTCTTGTTCCTTCTCCGTCCCCTTCGCATGTGTACTACTATTGCAGCTTCATACTTTCAAACTGTTGTTACATAACATACTTTACTCTCTACAGTTTTCTGTATTACACTACTACGCTTTATCACTATTTGGAACTAATTTATTCTCTATCTTTGTTGAACAATGTGATGAAGCATTTCCTTTCCCCCAATGCTATTCTCTGGAGGAACCAAATTCATGGTTCCAAAACAAAACTATAATAATACTATCCTTAATATTTATCCCACTTTCTGTTTCTCTCGCTCTGTCTGTGCGTGATTGATTATAAGATTAAGCGTTTATATAATTGGACTGCAAGAGGAGATTCAGTGGATTAGTGTCTGCATCTTAATGGATTTCTATTTGATCCTTGTATCGTTAGCTTAGGAGTTTTTGAGTTGATTGATATTAGATAACATGTATTCCATCTCAAAATCATCGGTAATGAGTGAGAAAAGTAACTCACCTATCTTAGGGTCGTGAGATTCCTCGGATTTTCAGAAGTGGGATTTTCGAAATTCTCCCTTAAGATGGTATCTCTTTTTGAGTTCACCATTCTTGATCAAATCACAAATCACAGTAATAGATGTTCAATCTCAAAACCAATTAACAACGAAAGGAATAGTACATTCATCTACTTGTGCGACCTACAAATACCCAAGAATGATGTGTTGATGCATGTAACTTTAGAATAACTTACCAGTCGAGGCTATTTGGATGATTGGTGATTTGACAGTATTCATGTTCTTCTTGAATGGTCCCTCATTTTTCTTCCTTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATATACACGGTATCGGTCGCAACAATGCTAAGAAAATACTTTTTGATCTAAACCTGGAGAATAAGATAACCAAGGACTTATCTGAGGAAGAACTAAAATCTGTAAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCACTCTCTCTCTACCTGTGTGTTTTTGTTAAAATTACAAGAGTTAGTTGTCTCTATACTTACAAATGCAATTGTTTGTTTTGCAGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAAATTCAGTGTTACCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGCAAGAAGAAGGCTCCTCGTTGATGTCCTTACGATTGAACCGAGTAAATCTCTTTTAAAACCTTTGAGATATATTCTTTTTAACTCTGGAATTGCGTCTAATTTCCTCATGGGAATATAGTTTCTTGCAAACACCCTGTTATGTTATTGTTGCGCCATATTCTACTTTACAGATGTCCTCACCTTCTTTGACGAATGCTCAATGTTCCGTAGATGAGTGGTGTTATCTTAACTGATCATTTAGTTCTTTATGCAACTTAGCAAA

mRNA sequence

ATTGATTGAAACCGAAGGCAGAAAGCGGTGGGAGCCTGAGTTGAATCATAATCCAAGTTTGTGTTCGTAATGTGCTGATCGACAAGTTGGAACAGAGGACATCATGGCGCAAACTTTAGCAATCCCACTGGCTCCTTCACTCTCCCTTATCTGCAATTCTCGCAACTCCAATCCTCTATCTAACACTCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATATACACGGTATCGGTCGCAACAATGCTAAGAAAATACTTTTTGATCTAAACCTGGAGAATAAGATAACCAAGGACTTATCTGAGGAAGAACTAAAATCTGTAAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAAATTCAGTGTTACCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGCAAGAAGAAGGCTCCTCGTTGATGTCCTTACGATTGAACCGAGTAAATCTCTTTTAAAACCTTTGAGATATATTCTTTTTAACTCTGGAATTGCGTCTAATTTCCTCATGGGAATATAGTTTCTTGCAAACACCCTGTTATGTTATTGTTGCGCCATATTCTACTTTACAGATGTCCTCACCTTCTTTGACGAATGCTCAATGTTCCGTAGATGAGTGGTGTTATCTTAACTGATCATTTAGTTCTTTATGCAACTTAGCAAA

Coding sequence (CDS)

ATGGCGCAAACTTTAGCAATCCCACTGGCTCCTTCACTCTCCCTTATCTGCAATTCTCGCAACTCCAATCCTCTATCTAACACTCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATATACACGGTATCGGTCGCAACAATGCTAAGAAAATACTTTTTGATCTAAACCTGGAGAATAAGATAACCAAGGACTTATCTGAGGAAGAACTAAAATCTGTAAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAAATTCAGTGTTACCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGCAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Homology
[Close]
BLAST of IVF0011872 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.9e-65
Identity = 128/169 (75.74%), Postives = 146/169 (86.39%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +A+P+A SLSLICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEEL  +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]
BLAST of IVF0011872 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 241.1 bits (614), Expect = 8.9e-63
Identity = 127/169 (75.15%), Postives = 147/169 (86.98%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPL-SNTLSF-PISNPQVRGLQIKCVRVGGVEIPNNKR 60
           MA TLA P+APS+SLICN++ S  L S++L+F P++     GL IKCVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNAL 120
           V+YSLQYIHGIGR+ A++IL DL LENK+TK+LSE+EL  VRDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIAGKKKAP 167
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 169

[Close]
BLAST of IVF0011872 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-30
Identity = 69/148 (46.62%), Postives = 97/148 (65.54%), Query Frame = 0 

Query: 20  RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 139
            L + NK+ +DL+ +EL  +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]
BLAST of IVF0011872 vs. ExPASy Swiss-Prot
Match: B1VAC3 (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0 

Query: 47  RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKI-TKDLSEEELKSVRDEVSK 106
           R+ G++IP++KRV  +L YI+G+G+  ++KIL +LN+ + I  K+L+E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 165
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

[Close]
BLAST of IVF0011872 vs. ExPASy Swiss-Prot
Match: Q6F1W9 (30S ribosomal protein S13 OS=Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1) OX=265311 GN=rpsM PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.2e-28
Identity = 62/119 (52.10%), Postives = 88/119 (73.95%), Query Frame = 0 

Query: 47  RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKI-TKDLSEEELKSVRDEVSK 106
           R+ GVEIPN KRV  SL YI+GIG + ++K+L  LN+   + T+DL+EE++K++  E+S 
Sbjct: 3   RISGVEIPNEKRVVISLTYIYGIGLSTSQKVLSKLNISEDVRTRDLTEEQIKAISTEISN 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 165
           + +EG+LRR  +L I+RL EI CYRG+RH +GLP RGQ +K N RT+KG +  +A KKK
Sbjct: 63  FKVEGELRREVSLNIKRLMEIGCYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121

[Close]
BLAST of IVF0011872 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.7e-86
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]
BLAST of IVF0011872 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.7e-86
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of IVF0011872 vs. ExPASy TrEMBL
Match: A0A0A0KN28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.4e-81
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT AIPLA SLSLI NSRN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]
BLAST of IVF0011872 vs. ExPASy TrEMBL
Match: A0A6J1JXU5 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489278 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.3e-80
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MA TLA+P+APSLSLICNSR SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDL+EEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of IVF0011872 vs. ExPASy TrEMBL
Match: A0A6J1FGA3 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445150 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.3e-80
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MA TLA+P+APSLSLICNSR SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 153 MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 212

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDL+EEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 213 YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 272

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 273 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 319

[Close]
BLAST of IVF0011872 vs. NCBI nr
Match: XP_008465819.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 326 bits (835), Expect = 2.82e-112
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of IVF0011872 vs. NCBI nr
Match: KAA0047502.1 (30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 326 bits (835), Expect = 1.10e-111
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]
BLAST of IVF0011872 vs. NCBI nr
Match: XP_038876079.1 (30S ribosomal protein S13, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 316 bits (810), Expect = 1.83e-108
Identity = 160/167 (95.81%), Postives = 166/167 (99.40%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+LA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of IVF0011872 vs. NCBI nr
Match: XP_004140327.1 (30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothetical protein Csa_018654 [Cucumis sativus])

HSP 1 Score: 308 bits (790), Expect = 2.05e-105
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT AIPLA SLSLI NSRN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]
BLAST of IVF0011872 vs. NCBI nr
Match: XP_022993180.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 304 bits (779), Expect = 9.77e-104
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MA TLA+P+APSLSLICNSR SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDL+EEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of IVF0011872 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-66
Identity = 128/169 (75.74%), Postives = 146/169 (86.39%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +A+P+A SLSLICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEEL  +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]
BLAST of IVF0011872 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-36
Identity = 79/114 (69.30%), Postives = 93/114 (81.58%), Query Frame = 0 

Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +A+P+A SLSLICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDL 113
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEEL  +RDEVSKYMIEGDL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114

[Close]
BLAST of IVF0011872 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 69/148 (46.62%), Postives = 97/148 (65.54%), Query Frame = 0 

Query: 20  RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 139
            L + NK+ +DL+ +EL  +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

The following BLAST results are available for this feature:
BLAST of IVF0011872 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427321.9e-6575.7430S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P821638.9e-6375.1530S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P... [more]
Q9CA192.0e-3046.62Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
B1VAC32.4e-2852.9430S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1[more]
Q6F1W94.2e-2852.1030S ribosomal protein S13 OS=Mesoplasma florum (strain ATCC 33453 / NBRC 100688 ... [more]
BLAST of IVF0011872 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVL62.7e-86100.0030S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CPR42.7e-86100.0030S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408... [more]
A0A0A0KN284.4e-8194.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1[more]
A0A6J1JXU58.3e-8092.2230S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FGA38.3e-8092.2230S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
BLAST of IVF0011872 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465819.12.82e-112100.00PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo][more]
KAA0047502.11.10e-111100.0030S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal p... [more]
XP_038876079.11.83e-10895.8130S ribosomal protein S13, chloroplastic-like [Benincasa hispida][more]
XP_004140327.12.05e-10594.6130S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothe... [more]
XP_022993180.19.77e-10492.2230S ribosomal protein S13, chloroplastic-like [Cucurbita maxima][more]
BLAST of IVF0011872 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G14320.11.4e-6675.74Ribosomal protein S13/S18 family [more]
AT5G14320.23.3e-3669.30Ribosomal protein S13/S18 family [more]
AT1G77750.11.4e-3146.62Ribosomal protein S13/S18 family [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 89..109
NoneNo IPR availableGENE3D1.10.8.50coord: 46..114
e-value: 3.1E-25
score: 90.1
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..165
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 115..167
e-value: 6.5E-26
score: 91.7
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 47..151
e-value: 6.1E-32
score: 110.7
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 48..154
score: 34.781033
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 45..161
score: 24.238941
IPR019980Ribosomal protein S13, bacterial-typeTIGRFAMTIGR03631TIGR03631coord: 47..156
e-value: 2.2E-40
score: 135.6
IPR019980Ribosomal protein S13, bacterial-typePANTHERPTHR10871:SF137S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIALcoord: 1..165
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 130..143
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 46..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011872.2IVF0011872.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding