IVF0011823 (gene) Melon (IVF77) v1

Overview
NameIVF0011823
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCharged multivesicular body protein 7 isoform X1
Locationchr02: 18381375 .. 18381793 (+)
RNA-Seq ExpressionIVF0011823
SyntenyIVF0011823
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGCCGTCCCTGCCTCTCTTCTCTCCATCGAGATCTTAGGCGACAATCTCCCTCCGTCTGTCGAAGCCGCCACCGTCACCTTAGTTCTCCGTCAAGCTTCTGTTTGTCGTTAGCTCAAGCTGCCACATCCCGAGTCGCTCCCCTTTCCATCAGCCATCTCCTATGCGTCGCGACGTCTGAATTTGAAGCGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCACGAAGCTCCGACCGCCGTTGTCGCGTCTCCACGAACCCAGCTGTCGCCGTCACGGTCTCCCATTCGCTTGAAGCTTGTTGCACAATCCATCCTTCTCCGTAGCACGCTACCGCACCAGGGCATGTTCTCCTTGCTGTTGAAGAAGCCTCCATCCTCGAGCAGTCACGTCCCAAGTGTGGATGCATAG

mRNA sequence

ATGGCCGCCGCCGTCCCTGCCTCTCTTCTCTCCATCGAGATCTTAGGCGACAATCTCCCTCCGTCTGTCGAAGCCGCCACCGTCACCTTAGTTCTCCCTGCCACATCCCGAGTCGCTCCCCTTTCCATCAGCCATCTCCTATGCGTCGCGACGTCTGAATTTGAAGCGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCACGAAGCTCCGACCGCCGTTGTCGCGTCTCCACGAACCCAGCTGTCGCCGTCACGGTCTCCCATTCGCTTGAAGCTTGTTGCACAATCCATCCTTCTCCGTAGCACGCTACCGCACCAGGGCATGTTCTCCTTGCTGTTGAAGAAGCCTCCATCCTCGAGCAGTCACGTCCCAAGTGTGGATGCATAG

Coding sequence (CDS)

ATGGCCGCCGCCGTCCCTGCCTCTCTTCTCTCCATCGAGATCTTAGGCGACAATCTCCCTCCGTCTGTCGAAGCCGCCACCGTCACCTTAGTTCTCCCTGCCACATCCCGAGTCGCTCCCCTTTCCATCAGCCATCTCCTATGCGTCGCGACGTCTGAATTTGAAGCGAGTGGATTGTGTCTGCTCCAACCGGTGTTTGTCCACGAAGCTCCGACCGCCGTTGTCGCGTCTCCACGAACCCAGCTGTCGCCGTCACGGTCTCCCATTCGCTTGAAGCTTGTTGCACAATCCATCCTTCTCCGTAGCACGCTACCGCACCAGGGCATGTTCTCCTTGCTGTTGAAGAAGCCTCCATCCTCGAGCAGTCACGTCCCAAGTGTGGATGCATAG

Protein sequence

MAAAVPASLLSIEILGDNLPPSVEAATVTLVLPATSRVAPLSISHLLCVATSEFEASGLCLLQPVFVHEAPTAVVASPRTQLSPSRSPIRLKLVAQSILLRSTLPHQGMFSLLLKKPPSSSSHVPSVDA
Homology
[Close]
BLAST of IVF0011823 vs. ExPASy TrEMBL
Match: A0A5A7V9C3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.0e-28
Identity = 74/96 (77.08%), Postives = 80/96 (83.33%), Query Frame = 0 

Query: 34   ATSRVAPLSISHLLCVATSEFEASGLCLLQPVFVHEAPTAVVASPRTQLSPSRSPIRLKL 93
            AT RVAPLS+SHLL +ATSE E SGLCLLQPVF+HEA   VV SPRT+  PSRSPI ++L
Sbjct: 950  ATPRVAPLSVSHLLYIATSESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMEL 1009

Query: 94   VAQSILLRSTLPHQGMFSLLLKKPPSSSSHVPSVDA 130
            VA SILLRSTL HQGM SL LKKPPSSSSHVPSV A
Sbjct: 1010 VAPSILLRSTLLHQGMLSLPLKKPPSSSSHVPSVGA 1045

[Close]
BLAST of IVF0011823 vs. ExPASy TrEMBL
Match: A0A5D3BX22 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00750 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.3e-28
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 0 

Query: 34  ATSRVAPLSISHLLCVATSEFEASGLCLLQPVFVHEAPTAVVASPRTQLSPSRSPIRLKL 93
           AT R  PL +SH LC+A   F+ASGLCLLQP+FV+E PT V+ SPRTQ  PSRSPIR++L
Sbjct: 86  ATLRAVPLFVSHFLCIAMFGFKASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMEL 145

Query: 94  VAQSILLRSTLPHQGMFSLLLKKPPSSSSHVPSVDA 130
           +A SILLRSTLPHQG+ S  LKKPPSSSSHVPSVDA
Sbjct: 146 IAPSILLRSTLPHQGVLSSPLKKPPSSSSHVPSVDA 181

[Close]
BLAST of IVF0011823 vs. ExPASy TrEMBL
Match: A0A5A7U8W2 (Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00170 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.4e-28
Identity = 70/100 (70.00%), Postives = 81/100 (81.00%), Query Frame = 0 

Query: 30  LVLPATSRVAPLSISHLLCVATSEFEASGLCLLQPVFVHEAPTAVVASPRTQLSPSRSPI 89
           L   AT R  PLS+SHLLC+A   F+ASGLCLLQP+FV+E+PT V+  PRTQ   SRSPI
Sbjct: 82  LAQAATLRAVPLSVSHLLCIAMFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPI 141

Query: 90  RLKLVAQSILLRSTLPHQGMFSLLLKKPPSSSSHVPSVDA 130
           R++L+A SILLRSTLPHQG+ S  LKKPPSSSSHVPSVDA
Sbjct: 142 RMELIAPSILLRSTLPHQGVLSSPLKKPPSSSSHVPSVDA 181

[Close]
BLAST of IVF0011823 vs. ExPASy TrEMBL
Match: A0A5D3DMR1 (GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001490 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 29  TLVLPATSRVAPLSISHLLCVATSEFEASGLCLLQPVFVHEAPTAVVASPRTQLSPSRSP 88
           +L   ATSR APLS+SHLL V T   +ASGLCLLQP+FVHEA TAVVASPRTQL PSRSP
Sbjct: 222 SLAQAATSRAAPLSVSHLLYVGTFGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSP 281

Query: 89  IRLKLVAQSILLRSTLPHQGMFSLLLKKPPSSSSHVPSVDA 130
           IR+++VA SILL STL HQ +         SSSS+VPSV A
Sbjct: 282 IRMEIVAPSILLCSTLSHQDVL--------SSSSYVPSVGA 314

[Close]
BLAST of IVF0011823 vs. ExPASy TrEMBL
Match: A0A5A7TWK4 (Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001660 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09
Identity = 57/123 (46.34%), Postives = 64/123 (52.03%), Query Frame = 0 

Query: 4   AVPASLLSIEILGDNLPPSVEAATVTLVLPATSRVAPLSISHLLCVATSEFEASGLCLLQ 63
           A PA LLS EI  DNLP                                 F+ASGL LLQ
Sbjct: 143 AAPAFLLSTEISRDNLP--------------------------------LFKASGLRLLQ 202

Query: 64  PVFVHEAPTAVVASPRTQLSPSRSPIRLKLVAQSILLRSTLPHQGMFSLLLKKPPSSSSH 123
                     VVAS RTQ   SRSPI ++LVA SI+LRSTLPHQG+ +  LKKP SSS+H
Sbjct: 203 ---------LVVASLRTQSPLSRSPICVELVAPSIILRSTLPHQGVLTSPLKKPSSSSNH 224

Query: 124 VPS 127
           VPS
Sbjct: 263 VPS 224

[Close]
BLAST of IVF0011823 vs. NCBI nr
Match: TYK03645.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 3.67e-38
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 0 

Query: 34  ATSRVAPLSISHLLCVATSEFEASGLCLLQPVFVHEAPTAVVASPRTQLSPSRSPIRLKL 93
           AT R  PL +SH LC+A   F+ASGLCLLQP+FV+E PT V+ SPRTQ  PSRSPIR++L
Sbjct: 86  ATLRAVPLFVSHFLCIAMFGFKASGLCLLQPMFVYEVPTVVLTSPRTQPMPSRSPIRMEL 145

Query: 94  VAQSILLRSTLPHQGMFSLLLKKPPSSSSHVPSVDA 129
           +A SILLRSTLPHQG+ S  LKKPPSSSSHVPSVDA
Sbjct: 146 IAPSILLRSTLPHQGVLSSPLKKPPSSSSHVPSVDA 181

[Close]
BLAST of IVF0011823 vs. NCBI nr
Match: KAA0050041.1 (charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 3.67e-38
Identity = 69/96 (71.88%), Postives = 80/96 (83.33%), Query Frame = 0 

Query: 34  ATSRVAPLSISHLLCVATSEFEASGLCLLQPVFVHEAPTAVVASPRTQLSPSRSPIRLKL 93
           AT R  PLS+SHLLC+A   F+ASGLCLLQP+FV+E+PT V+  PRTQ   SRSPIR++L
Sbjct: 86  ATLRAVPLSVSHLLCIAMFRFKASGLCLLQPMFVYESPTVVLTPPRTQPMSSRSPIRMEL 145

Query: 94  VAQSILLRSTLPHQGMFSLLLKKPPSSSSHVPSVDA 129
           +A SILLRSTLPHQG+ S  LKKPPSSSSHVPSVDA
Sbjct: 146 IAPSILLRSTLPHQGVLSSPLKKPPSSSSHVPSVDA 181

[Close]
BLAST of IVF0011823 vs. NCBI nr
Match: KAA0062299.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 8.29e-35
Identity = 74/96 (77.08%), Postives = 80/96 (83.33%), Query Frame = 0 

Query: 34   ATSRVAPLSISHLLCVATSEFEASGLCLLQPVFVHEAPTAVVASPRTQLSPSRSPIRLKL 93
            AT RVAPLS+SHLL +ATSE E SGLCLLQPVF+HEA   VV SPRT+  PSRSPI ++L
Sbjct: 950  ATPRVAPLSVSHLLYIATSESEVSGLCLLQPVFIHEASIVVVTSPRTKPPPSRSPICMEL 1009

Query: 94   VAQSILLRSTLPHQGMFSLLLKKPPSSSSHVPSVDA 129
            VA SILLRSTL HQGM SL LKKPPSSSSHVPSV A
Sbjct: 1010 VAPSILLRSTLLHQGMLSLPLKKPPSSSSHVPSVGA 1045

[Close]
BLAST of IVF0011823 vs. NCBI nr
Match: KAA0059932.1 (GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1 GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 6.44e-28
Identity = 66/96 (68.75%), Postives = 74/96 (77.08%), Query Frame = 0 

Query: 34  ATSRVAPLSISHLLCVATSEFEASGLCLLQPVFVHEAPTAVVASPRTQLSPSRSPIRLKL 93
           ATSR APLS+SHLL V T   +ASGLCLLQP+FVHEA TAVVASPRTQL PSRSPIR+++
Sbjct: 227 ATSRAAPLSVSHLLYVGTFGSKASGLCLLQPMFVHEASTAVVASPRTQLPPSRSPIRMEI 286

Query: 94  VAQSILLRSTLPHQGMFSLLLKKPPSSSSHVPSVDA 129
           VA SILL STL HQ + S        SSS+VPSV A
Sbjct: 287 VAPSILLCSTLSHQDVLS--------SSSYVPSVGA 314

[Close]
BLAST of IVF0011823 vs. NCBI nr
Match: KAA0047344.1 (zinc finger protein ZAT11 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 4.53e-13
Identity = 57/123 (46.34%), Postives = 64/123 (52.03%), Query Frame = 0 

Query: 4   AVPASLLSIEILGDNLPPSVEAATVTLVLPATSRVAPLSISHLLCVATSEFEASGLCLLQ 63
           A PA LLS EI  DNLP                                 F+ASGL LLQ
Sbjct: 143 AAPAFLLSTEISRDNLP--------------------------------LFKASGLRLLQ 202

Query: 64  PVFVHEAPTAVVASPRTQLSPSRSPIRLKLVAQSILLRSTLPHQGMFSLLLKKPPSSSSH 123
                     VVAS RTQ   SRSPI ++LVA SI+LRSTLPHQG+ +  LKKP SSS+H
Sbjct: 203 ---------LVVASLRTQSPLSRSPICVELVAPSIILRSTLPHQGVLTSPLKKPSSSSNH 224

Query: 124 VPS 126
           VPS
Sbjct: 263 VPS 224

The following BLAST results are available for this feature:
BLAST of IVF0011823 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011823 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9C32.0e-2877.08Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00450 PE... [more]
A0A5D3BX223.3e-2871.88Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7U8W24.4e-2870.00Charged multivesicular body protein 7 isoform X1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3DMR11.8e-2166.34GPI mannosyltransferase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7TWK43.5e-0946.34Zinc finger protein ZAT11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
BLAST of IVF0011823 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK03645.13.67e-3871.88charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0050041.13.67e-3871.88charged multivesicular body protein 7 isoform X1 [Cucumis melo var. makuwa][more]
KAA0062299.18.29e-3577.08pol protein [Cucumis melo var. makuwa][more]
KAA0059932.16.44e-2868.75GPI mannosyltransferase 1-like isoform X1 [Cucumis melo var. makuwa] >TYK24878.1... [more]
KAA0047344.14.53e-1346.34zinc finger protein ZAT11 [Cucumis melo var. makuwa][more]
BLAST of IVF0011823 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011823.1IVF0011823.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016020 membrane
molecular_function GO:0000030 mannosyltransferase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding