IVF0011816 (gene) Melon (IVF77) v1

Overview


Name	IVF0011816
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr07: 3042633 .. 3042845 (+)
RNA-Seq Expression	IVF0011816
Synteny	IVF0011816

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTGAGGAGTTTGATGCTGAATTTAGTCGTCCCCATGTTGAGGGGAATGTGGAAGAGCAGTTGCTTGATAAACTGGCTCAAAGATTGGTGTCGGAGATTAGATCGACACAATTAGACCCTGAAAAGAAGTATGAGATTGAACGATTGAAAGGCTTAGGTGCTACCACTTTTGTGGGGACAATAAATCCCGCTGATGCTAAAGCATGA

mRNA sequence

ATGGAAAGTGAGGAGTTTGATGCTGAATTTAGTCGTCCCCATGTTGAGGGGAATGTGGAAGAGCAGTTGCTTGATAAACTGGCTCAAAGATTGGTGTCGGAGATTAGATCGACACAATTAGACCCTGAAAAGAAGTATGAGATTGAACGATTGAAAGGCTTAGGTGCTACCACTTTTGTGGGGACAATAAATCCCGCTGATGCTAAAGCATGA

Coding sequence (CDS)

ATGGAAAGTGAGGAGTTTGATGCTGAATTTAGTCGTCCCCATGTTGAGGGGAATGTGGAAGAGCAGTTGCTTGATAAACTGGCTCAAAGATTGGTGTCGGAGATTAGATCGACACAATTAGACCCTGAAAAGAAGTATGAGATTGAACGATTGAAAGGCTTAGGTGCTACCACTTTTGTGGGGACAATAAATCCCGCTGATGCTAAAGCATGA

Protein sequence

MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFVGTINPADAKA

Homology

[Close]

BLAST of IVF0011816 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
           M S E DAE SRPHVEGN+EEQLLD+LAQRL+S IRS Q DPEKKY IERLK LGATTFV
Sbjct: 42  MGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFV 101

Query: 61  GTINPADAKA 71
           GT NPADA+A
Sbjct: 102 GTTNPADAEA 111

[Close]

BLAST of IVF0011816 vs. ExPASy TrEMBL
Match: A0A5A7VHN9 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00440 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1   MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL 55
           MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL
Sbjct: 262 MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL 315

[Close]

BLAST of IVF0011816 vs. ExPASy TrEMBL
Match: A0A5D3DWP4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00360 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1   MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL 55
           MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL
Sbjct: 262 MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL 315

[Close]

BLAST of IVF0011816 vs. ExPASy TrEMBL
Match: A0A5A7ULX5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006310 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
          MESEE DAE SRPHVEGNVEEQLLD+LAQR VS I+STQ D EKK+EIERLK LG+TTF 
Sbjct: 23 MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82

Query: 61 GTINPADAKA 71
           T NPA+A+A
Sbjct: 83 RTTNPANAEA 92

[Close]

BLAST of IVF0011816 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 52/69 (75.36%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
          M S E DAE SRPHVEGNVEEQLLD+LAQRL+  IR  Q D EKKY IERLK LGATTFV
Sbjct: 23 MGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFV 82

Query: 61 GTINPADAK 70
          GT NP DA+
Sbjct: 83 GTTNPVDAE 91

[Close]

BLAST of IVF0011816 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 1.21e-24
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
           M S E DAE SRPHVEGN+EEQLLD+LAQRL+S IRS Q DPEKKY IERLK LGATTFV
Sbjct: 42  MGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFV 101

Query: 61  GTINPADAKA 70
           GT NPADA+A
Sbjct: 102 GTTNPADAEA 111

[Close]

BLAST of IVF0011816 vs. NCBI nr
Match: KAA0066710.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 5.65e-24
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1   MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL 54
           MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL
Sbjct: 262 MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL 315

[Close]

BLAST of IVF0011816 vs. NCBI nr
Match: TYK27858.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 5.65e-24
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1   MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL 54
           MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL
Sbjct: 262 MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGL 315

[Close]

BLAST of IVF0011816 vs. NCBI nr
Match: KAA0056913.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 1.16e-23
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
          MESEE DAE SRPHVEGNVEEQLLD+LAQR VS I+STQ D EKK+EIERLK LG+TTF 
Sbjct: 23 MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82

Query: 61 GTINPADAKA 70
           T NPA+A+A
Sbjct: 83 RTTNPANAEA 92

[Close]

BLAST of IVF0011816 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.86e-21
Identity = 52/69 (75.36%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
          M S E DAE SRPHVEGNVEEQLLD+LAQRL+  IR  Q D EKKY IERLK LGATTFV
Sbjct: 23 MGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFV 82

Query: 61 GTINPADAK 69
          GT NP DA+
Sbjct: 83 GTTNPVDAE 91

The following BLAST results are available for this feature:

BLAST of IVF0011816 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DES5	1.8e-20	80.00	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7VHN9	6.9e-20	100.00	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DWP4	6.9e-20	100.00	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7ULX5	3.4e-19	77.14	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SJ99	1.1e-17	75.36	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0011816 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035225.1	1.21e-24	80.00	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
KAA0066710.1	5.65e-24	100.00	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK27858.1	5.65e-24	100.00	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0056913.1	1.16e-23	77.14	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYJ99413.1 D...	[more]
KAA0026280.1	2.86e-21	75.36	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D...	[more]

BLAST of IVF0011816 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011816.2	IVF0011816.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding