IVF0011799 (gene) Melon (IVF77) v1

Overview
NameIVF0011799
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr06: 3204727 .. 3204948 (-)
RNA-Seq ExpressionIVF0011799
SyntenyIVF0011799
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATCCCTACTATGTTTACTCAAGGACTAAACACGTCACTTGATGAATTTGTGGCCAGTCGACTCGGATGGTTAGGTGACAGTAGGAATGCTTCAAGTGGGTTAAAGAGGAAGAAGGGTGGTCACTCTGTAGAGACTACGAACATAATTCAAAATGTCATGGAGTATGCCAATGACCAGCTCAACTGCATCGAAAACTGGCCGATCTTAAGGAATTAA

mRNA sequence

ATGGAGATCCCTACTATGTTTACTCAAGGACTAAACACGTCACTTGATGAATTTGTGGCCAGTCGACTCGGATGGTTAGGTGACAGTAGGAATGCTTCAAGTGGGTTAAAGAGGAAGAAGGGTGGTCACTCTGTAGAGACTACGAACATAATTCAAAATGTCATGGAGTATGCCAATGACCAGCTCAACTGCATCGAAAACTGGCCGATCTTAAGGAATTAA

Coding sequence (CDS)

ATGGAGATCCCTACTATGTTTACTCAAGGACTAAACACGTCACTTGATGAATTTGTGGCCAGTCGACTCGGATGGTTAGGTGACAGTAGGAATGCTTCAAGTGGGTTAAAGAGGAAGAAGGGTGGTCACTCTGTAGAGACTACGAACATAATTCAAAATGTCATGGAGTATGCCAATGACCAGCTCAACTGCATCGAAAACTGGCCGATCTTAAGGAATTAA

Protein sequence

MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYANDQLNCIENWPILRN
Homology
BLAST of IVF0011799 vs. ExPASy TrEMBL
Match: A0A5A7T7Z6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00830 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.9e-33
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1   MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND 60
           MEIPTMF+QGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND
Sbjct: 98  MEIPTMFSQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND 157

Query: 61  QLNCIENWPILRN 74
           QLNCIENWPILRN
Sbjct: 158 QLNCIENWPILRN 170

BLAST of IVF0011799 vs. ExPASy TrEMBL
Match: A0A5D3DH14 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold584G00140 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1   MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND 60
           MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVME + D
Sbjct: 98  MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMERSFD 157

BLAST of IVF0011799 vs. ExPASy TrEMBL
Match: A0A5A7TKY0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00690 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-18
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 1  MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND 60
          ++I TMF+QGLN S DEFVASR   LGD RNASS  KRK+    VETTNIIQNVMEYAN 
Sbjct: 20 IKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANS 79

Query: 61 QLNCIENWPILRN 74
          QLN I NWPILRN
Sbjct: 80 QLNYIANWPILRN 92

BLAST of IVF0011799 vs. ExPASy TrEMBL
Match: E5GBS5 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.9e-14
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 9   QGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYANDQLNCIENW 68
           +GLN S DEF+ SRLG  GD RNASS  KRK+ G  +E  NIIQN MEYANDQLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171

Query: 69  PILRN 74
           PILRN
Sbjct: 172 PILRN 176

BLAST of IVF0011799 vs. ExPASy TrEMBL
Match: A0A5D3BVH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00320 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 9   QGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYANDQLNCIENW 68
           +GLN S DEF+ SRLG  GD RNASS LKRK+ G  +ET NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 171

Query: 69  PILRN 74
            ILRN
Sbjct: 172 LILRN 176

BLAST of IVF0011799 vs. NCBI nr
Match: KAA0038998.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (374), Expect = 1.11e-43
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1   MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND 60
           MEIPTMF+QGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND
Sbjct: 98  MEIPTMFSQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND 157

Query: 61  QLNCIENWPILRN 73
           QLNCIENWPILRN
Sbjct: 158 QLNCIENWPILRN 170

BLAST of IVF0011799 vs. NCBI nr
Match: TYK22559.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 1.86e-29
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1   MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND 60
           MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVME + D
Sbjct: 98  MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMERSFD 157

BLAST of IVF0011799 vs. NCBI nr
Match: KAA0042367.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 2.42e-24
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 1  MEIPTMFTQGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYAND 60
          ++I TMF+QGLN S DEFVASR   LGD RNASS  KRK+    VETTNIIQNVMEYAN 
Sbjct: 20 IKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANS 79

Query: 61 QLNCIENWPILRN 73
          QLN I NWPILRN
Sbjct: 80 QLNYIANWPILRN 92

BLAST of IVF0011799 vs. NCBI nr
Match: ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 84.0 bits (206), Expect = 5.60e-18
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 9   QGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYANDQLNCIENW 68
           +GLN S DEF+ SRLG  GD RNASS  KRK+ G  +E  NIIQN MEYANDQLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171

Query: 69  PILRN 73
           PILRN
Sbjct: 172 PILRN 176

BLAST of IVF0011799 vs. NCBI nr
Match: TYK02236.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.12e-17
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 9   QGLNTSLDEFVASRLGWLGDSRNASSGLKRKKGGHSVETTNIIQNVMEYANDQLNCIENW 68
           +GLN S DEF+ SRLG  GD RNASS LKRK+ G  +ET NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDW 171

Query: 69  PILRN 73
            ILRN
Sbjct: 172 LILRN 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T7Z61.9e-3398.63Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DH141.2e-2295.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TKY03.0e-1872.60Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GBS55.9e-1467.69Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3BVH62.2e-1367.69Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0038998.11.11e-4398.63retrotransposon protein [Cucumis melo var. makuwa][more]
TYK22559.11.86e-2995.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0042367.12.42e-2472.60retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon p... [more]
ADN33917.15.60e-1867.69hypothetical protein [Cucumis melo subsp. melo][more]
TYK02236.13.12e-1767.69retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011799.1IVF0011799.1mRNA