IVF0011752 (gene) Melon (IVF77) v1

Overview


Name	IVF0011752
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr12: 6214175 .. 6214595 (+)
RNA-Seq Expression	IVF0011752
Synteny	IVF0011752

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCACGGCTCAACCAAAGAAAAACAGCTAAAAAACGGCTGGCAGCTTGGGTTGGAGGTAGAAAGCACGTGGTTGAAAGGCGGCTTGCTGCTGCTAGCTCATGCGGCGATCGGCTCTGCAAGACACAACTCAGCTGGACGGAAGTTTGCACGCAACTGGAGAAAAGAAGACAGCTCGCATACGCAGACGTGTGGCTTACCGAATGGCTGACAAACTCTTGGTCAGGCTGGGGAAGAACGACATAAACGACGACGAAGAAATGAAGAGAGCACCGATGCACAATTTCGTTGGGCTTTGTCAGATGAGAAACGCGGTGGCTTGAGTTGTTCATGCGATGGGATCGTGCAACTATCGACGACTTCGTTAGAGAGGGGAGTGGCGGAGAGAGCTGGCGGCGATAGTGGACTCATAGAGTAA

mRNA sequence

ATGGCTTCACGGCTCAACCAAAGAAAAACAGCTAAAAAACGGCTGGCAGCTTGGGTTGGAGGTAGAAAGCACGTGGTTGAAAGGCGGCTTGCTGCTGCTAGCTCATGCGGCGATCGGCTCTGCAAGACACAACTCAGCTGGACGGAAGCTGGGGAAGAACGACATAAACGACGACGAAGAAATGAAGAGAGCACCGATGCACAATTTCGTTGGGCTTTGTCAGATGAGAAACGCGGTGGCTTGAGTTGTTCATGCGATGGGATCGTGCAACTATCGACGACTTCGTTAGAGAGGGGAGTGGCGGAGAGAGCTGGCGGCGATAGTGGACTCATAGAGTAA

Coding sequence (CDS)

ATGGCTTCACGGCTCAACCAAAGAAAAACAGCTAAAAAACGGCTGGCAGCTTGGGTTGGAGGTAGAAAGCACGTGGTTGAAAGGCGGCTTGCTGCTGCTAGCTCATGCGGCGATCGGCTCTGCAAGACACAACTCAGCTGGACGGAAGCTGGGGAAGAACGACATAAACGACGACGAAGAAATGAAGAGAGCACCGATGCACAATTTCGTTGGGCTTTGTCAGATGAGAAACGCGGTGGCTTGAGTTGTTCATGCGATGGGATCGTGCAACTATCGACGACTTCGTTAGAGAGGGGAGTGGCGGAGAGAGCTGGCGGCGATAGTGGACTCATAGAGTAA

Protein sequence

MASRLNQRKTAKKRLAAWVGGRKHVVERRLAAASSCGDRLCKTQLSWTEAGEERHKRRRRNEESTDAQFRWALSDEKRGGLSCSCDGIVQLSTTSLERGVAERAGGDSGLIE

Homology

[Close]

BLAST of IVF0011752 vs. ExPASy TrEMBL
Match: A0A5A7SNJ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00080 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.2e-07
Identity = 56/148 (37.84%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 1   MASRLNQRKTA-----KKRLAAWVGGRKHVVERRLAAASSCGDRLCKTQLSWTEAGEERH 60
           MA RLNQRKT      +++   W+     VVE  LAA  S GDRLCK  L W EA ++  
Sbjct: 1   MAWRLNQRKTTYGLGLRQKHVGWL-----VVEGWLAAIGSFGDRLCKMWLGWMEARKQLE 60

Query: 61  KRRR-----------------------------RNEESTDA--QFRWALSDEKRGGLSCS 113
           KRRR                             R E  T +    RW  +   + G   S
Sbjct: 61  KRRRLAYVDTWLDWTADNRLVRLRKNGVDDGEQRREAPTRSFIGLRWMRNAVVQVG---S 120

[Close]

BLAST of IVF0011752 vs. NCBI nr
Match: KAA0032764.1 (hypothetical protein E6C27_scaffold708G00080 [Cucumis melo var. makuwa] >TYK23932.1 hypothetical protein E5676_scaffold428G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 3.13e-09
Identity = 55/148 (37.16%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 1   MASRLNQRKTA-----KKRLAAWVGGRKHVVERRLAAASSCGDRLCKTQLSWTEAGEERH 60
           MA RLNQRKT      +++   W+     VVE  LAA  S GDRLCK  L W EA ++  
Sbjct: 1   MAWRLNQRKTTYGLGLRQKHVGWL-----VVEGWLAAIGSFGDRLCKMWLGWMEARKQLE 60

Query: 61  KRRR----------------------------RNEESTDAQF---RWALSDEKRGGLSCS 112
           KRRR                            +  E+    F   RW  +   + G   S
Sbjct: 61  KRRRLAYVDTWLDWTADNRLVRLRKNGVDDGEQRREAPTRSFIGLRWMRNAVVQVG---S 120

The following BLAST results are available for this feature:

BLAST of IVF0011752 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNJ4	8.2e-07	37.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0011752 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032764.1	3.13e-09	37.16	hypothetical protein E6C27_scaffold708G00080 [Cucumis melo var. makuwa] >TYK2393...	[more]

BLAST of IVF0011752 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011752.1	IVF0011752.1	mRNA