IVF0011716 (gene) Melon (IVF77) v1

Overview


Name	IVF0011716
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Kinetochore protein NDC80-like protein
Location	chr03: 21735120 .. 21736203 (+)
RNA-Seq Expression	IVF0011716
Synteny	IVF0011716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGATGCTCAACAAGAAGCGCACAATTTGGATCTTCTGGAAAAAGAAACAGCAGTGATTTTAAAGGTATTAATACTGCTCCCATAATTATTGTCTGAATTTATTTTTGGGGTGGGGGTGAGGGCATTCAAATAGTCTTTTTTTATGAGGTGACCTCGTACTTAAGGACTAAACACAAAAGTTTGTCAAACTTAAGGACCAAGGGTGAACTTTACCTTTCTTATCACTTGCATTAGGGAGTTAAATCTCAAAATTATGTAATATACTATACTATATGTTATATTAAGGATGTCATTGTAATAAGTTTAGGTAATGAGAAGTAAAATTCTTGGATTGATAACTTCTTTTTTTCTAAAATTTGTTTCTTATTAAATCTAGATTTAAATGGCTACAATGAAACTTAGTTTCTATTCGGTTCTCAATGTTAAAAAAGTGGCATATTTGATTTGCATGATTTGAATTTGATTTTTAATTGGTCTCTAAAGATTTATATTAGTTTATCAGTTTATGCTACCTACCATAAGTGAGTAGATTACCAGATAATATGTTAGAATTGTGACTAACAATTAAAATATACTTACTAGATTTTGCTAATATGTATTTATATATGAGTTGGATTAGTTTTATCCAAAATCTAGATGGACCGGTAATCAATCTTTCGTTAACACAACCATATCAGTCTTCTCAAAGATTTCTATAAGCAGTATTCCATATATCTCATTGAATCTTGTCTTATACCTAAACTGTGATGGAAAACAGTTAACTATACTACCTGTCATAAGACTTTCCCCCTTTAGCTTCGTTTATTTAATCTATACTTGATGCTAGAATCTCCTCCATTCTTATTGTCATTCCTTGTTCTGTGAAGAATGCCAATTTGAAGCATCAGGAAGCTATAAAGCAAGGACAGGAAGAAATTCAGATGTGTGCTCGTGAAATAGTGTCATGTGTTGACTATGTCTCACAATATAAAGAATTTATTGGATCCAAAATTTCAGATATGAAAAGCTACCTCTCAAACACTGCTGTCGGTATCTCTGAGGCTTACAAGAATTCTTCGCCTGCACTGCTTAGTTAG

mRNA sequence

ATGGTGGAGGATGCTCAACAAGAAGCGCACAATTTGGATCTTCTGGAAAAAGAAACAGCAGTGATTTTAAAGAATGCCAATTTGAAGCATCAGGAAGCTATAAAGCAAGGACAGGAAGAAATTCAGATGTGTGCTCGTGAAATAGTGTCATGTGTTGACTATGTCTCACAATATAAAGAATTTATTGGATCCAAAATTTCAGATATGAAAAGCTACCTCTCAAACACTGCTGTCGGTATCTCTGAGGCTTACAAGAATTCTTCGCCTGCACTGCTTAGTTAG

Coding sequence (CDS)

ATGGTGGAGGATGCTCAACAAGAAGCGCACAATTTGGATCTTCTGGAAAAAGAAACAGCAGTGATTTTAAAGAATGCCAATTTGAAGCATCAGGAAGCTATAAAGCAAGGACAGGAAGAAATTCAGATGTGTGCTCGTGAAATAGTGTCATGTGTTGACTATGTCTCACAATATAAAGAATTTATTGGATCCAAAATTTCAGATATGAAAAGCTACCTCTCAAACACTGCTGTCGGTATCTCTGAGGCTTACAAGAATTCTTCGCCTGCACTGCTTAGTTAG

Protein sequence

MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKEFIGSKISDMKSYLSNTAVGISEAYKNSSPALLS

Homology

[Close]

BLAST of IVF0011716 vs. ExPASy Swiss-Prot
Match: Q9M1G5 (Kinetochore protein NDC80 homolog OS=Arabidopsis thaliana OX=3702 GN=NDC80 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-13
Identity = 36/85 (42.35%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           +VE  + EA NL+++EKE A  +K + L+ QEA+K+ +EE+Q CA ++ + +D +S+ KE
Sbjct: 475 LVESVKAEALNLEVVEKEAAEFVKASELRLQEAVKESEEEVQACAAQLFALIDSISKQKE 534

Query: 61  FIGSKISDMKSYLSNTAVGISEAYK 86
           ++ SKIS++K+ +++TA  +SE YK
Sbjct: 535 YMDSKISEIKTGVADTASAVSEIYK 559

[Close]

BLAST of IVF0011716 vs. ExPASy TrEMBL
Match: A0A5A7VAV7 (Kinetochore protein NDC80-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00320 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.9e-41
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
          MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE
Sbjct: 1  MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60

Query: 61 FIGSKISDMKSYLSNTAVGISEAYKNSSPALLS 94
          FIGSKISDMKSYLSNTAVGISEAYKNSSPALLS
Sbjct: 61 FIGSKISDMKSYLSNTAVGISEAYKNSSPALLS 93

[Close]

BLAST of IVF0011716 vs. ExPASy TrEMBL
Match: A0A6J1JAC2 (kinetochore protein NDC80 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482699 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           MVED Q EAH++D++E+E   ILKNA LKH+EAIKQG+EEI +CARE+V+CVD VSQYKE
Sbjct: 475 MVEDVQLEAHSIDVVEREAGEILKNAKLKHEEAIKQGEEEILICARELVACVDSVSQYKE 534

Query: 61  FIGSKISDMKSYLSNTAVGISEAYKNSSPALL 93
           F+ SKISDM+S LS TAVGISEAYKNS PA L
Sbjct: 535 FVRSKISDMRSNLSKTAVGISEAYKNSLPAEL 566

[Close]

BLAST of IVF0011716 vs. ExPASy TrEMBL
Match: A0A6J1E5Y9 (kinetochore protein NDC80 homolog OS=Cucurbita moschata OX=3662 GN=LOC111430885 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 65/92 (70.65%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           MVED Q EAH++D++E+E   +LKNA +KH+EAIKQG+EEI +CARE+V+CVD VSQYKE
Sbjct: 475 MVEDLQLEAHSIDVVEREAGELLKNAKVKHEEAIKQGEEEILICARELVACVDSVSQYKE 534

Query: 61  FIGSKISDMKSYLSNTAVGISEAYKNSSPALL 93
           F+ SKISDM+S LS TAVGISEAYKNS PA L
Sbjct: 535 FVRSKISDMRSNLSKTAVGISEAYKNSLPAEL 566

[Close]

BLAST of IVF0011716 vs. ExPASy TrEMBL
Match: A0A6J1D5D4 (kinetochore protein NDC80 homolog OS=Momordica charantia OX=3673 GN=LOC111017757 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.5e-26
Identity = 64/90 (71.11%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           MVED +QEAHNLDL+E+E   ILKNA LKHQEA+KQ +EEIQ+CARE+++ VD VS+Y+E
Sbjct: 475 MVEDVRQEAHNLDLMEREAGEILKNAKLKHQEAVKQSEEEIQICARELLAWVDSVSKYQE 534

Query: 61  FIGSKISDMKSYLSNTAVGISEAYKNSSPA 91
            + SKISDMKS LS TA+GISEAYKNS PA
Sbjct: 535 SVRSKISDMKSNLSKTAIGISEAYKNSLPA 564

[Close]

BLAST of IVF0011716 vs. ExPASy TrEMBL
Match: A0A0A0L740 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G213500 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           MVED QQEAHNLDL+E E    LKNA L HQEAIKQG+EEI MCARE++SC+D VSQYK 
Sbjct: 241 MVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKA 300

Query: 61  FIGSKISDMKSYLSNTAVGISEAYKNSSPA 91
            +  KISDM+S LS  A GISEA+KNS PA
Sbjct: 301 VVSCKISDMESCLSKAAAGISEAFKNSMPA 330

[Close]

BLAST of IVF0011716 vs. NCBI nr
Match: KAA0064728.1 (kinetochore protein NDC80-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (454), Expect = 1.50e-56
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
          MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE
Sbjct: 1  MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60

Query: 61 FIGSKISDMKSYLSNTAVGISEAYKNSSPALLS 93
          FIGSKISDMKSYLSNTAVGISEAYKNSSPALLS
Sbjct: 61 FIGSKISDMKSYLSNTAVGISEAYKNSSPALLS 93

[Close]

BLAST of IVF0011716 vs. NCBI nr
Match: XP_038884546.1 (kinetochore protein NDC80 homolog [Benincasa hispida])

HSP 1 Score: 142 bits (357), Expect = 3.21e-37
Identity = 71/91 (78.02%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           MVED QQ+AHNLDL+E+E    LKNA LKH+EAIKQG+EEIQ+CARE+VSCVD VS+YKE
Sbjct: 479 MVEDVQQKAHNLDLVEREALETLKNAKLKHEEAIKQGEEEIQICARELVSCVDSVSEYKE 538

Query: 61  FIGSKISDMKSYLSNTAVGISEAYKNSSPAL 91
           F+  KISDMKSYLSN AVGISEAYKNS PAL
Sbjct: 539 FVSFKISDMKSYLSNIAVGISEAYKNSLPAL 569

[Close]

BLAST of IVF0011716 vs. NCBI nr
Match: XP_022984383.1 (kinetochore protein NDC80 homolog [Cucurbita maxima])

HSP 1 Score: 132 bits (332), Expect = 9.44e-34
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           MVED Q EAH++D++E+E   ILKNA LKH+EAIKQG+EEI +CARE+V+CVD VSQYKE
Sbjct: 475 MVEDVQLEAHSIDVVEREAGEILKNAKLKHEEAIKQGEEEILICARELVACVDSVSQYKE 534

Query: 61  FIGSKISDMKSYLSNTAVGISEAYKNSSPALL 92
           F+ SKISDM+S LS TAVGISEAYKNS PA L
Sbjct: 535 FVRSKISDMRSNLSKTAVGISEAYKNSLPAEL 566

[Close]

BLAST of IVF0011716 vs. NCBI nr
Match: XP_023553517.1 (kinetochore protein NDC80 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131 bits (330), Expect = 1.81e-33
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           MVED Q EAH++D++E E   ILKNA LKH+EAIKQG+EEI +CARE+V+CVD VSQYKE
Sbjct: 475 MVEDVQLEAHSIDVVESEAGEILKNAKLKHEEAIKQGEEEILICARELVACVDSVSQYKE 534

Query: 61  FIGSKISDMKSYLSNTAVGISEAYKNSSPALL 92
           F+ SKISDM+S LS TAVGISEAYKNS PA L
Sbjct: 535 FVRSKISDMRSNLSKTAVGISEAYKNSLPAEL 566

[Close]

BLAST of IVF0011716 vs. NCBI nr
Match: KAG6576966.1 (Kinetochore protein NDC80-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014987.1 Kinetochore protein NDC80-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130 bits (326), Expect = 6.59e-33
Identity = 65/92 (70.65%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           MVED Q EAH++D++E+E   +LKNA +KH+EAIKQG+EEI +CARE+V+CVD VSQYKE
Sbjct: 475 MVEDLQLEAHSIDVVEREAGELLKNAKVKHEEAIKQGEEEILICARELVACVDSVSQYKE 534

Query: 61  FIGSKISDMKSYLSNTAVGISEAYKNSSPALL 92
           F+ SKISDM+S LS TAVGISEAYKNS PA L
Sbjct: 535 FVRSKISDMRSNLSKTAVGISEAYKNSLPAEL 566

[Close]

BLAST of IVF0011716 vs. TAIR 10
Match: AT3G54630.1 (CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 8.8e-15
Identity = 36/85 (42.35%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1   MVEDAQQEAHNLDLLEKETAVILKNANLKHQEAIKQGQEEIQMCAREIVSCVDYVSQYKE 60
           +VE  + EA NL+++EKE A  +K + L+ QEA+K+ +EE+Q CA ++ + +D +S+ KE
Sbjct: 475 LVESVKAEALNLEVVEKEAAEFVKASELRLQEAVKESEEEVQACAAQLFALIDSISKQKE 534

Query: 61  FIGSKISDMKSYLSNTAVGISEAYK 86
           ++ SKIS++K+ +++TA  +SE YK
Sbjct: 535 YMDSKISEIKTGVADTASAVSEIYK 559

The following BLAST results are available for this feature:

BLAST of IVF0011716 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1G5	1.2e-13	42.35	Kinetochore protein NDC80 homolog OS=Arabidopsis thaliana OX=3702 GN=NDC80 PE=1 ...	[more]

BLAST of IVF0011716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAV7	1.9e-41	100.00	Kinetochore protein NDC80-like protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1JAC2	2.7e-27	72.83	kinetochore protein NDC80 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482699 PE...	[more]
A0A6J1E5Y9	1.3e-26	70.65	kinetochore protein NDC80 homolog OS=Cucurbita moschata OX=3662 GN=LOC111430885 ...	[more]
A0A6J1D5D4	6.5e-26	71.11	kinetochore protein NDC80 homolog OS=Momordica charantia OX=3673 GN=LOC111017757...	[more]
A0A0A0L740	1.6e-24	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G213500 PE=3 SV=1	[more]

BLAST of IVF0011716 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064728.1	1.50e-56	100.00	kinetochore protein NDC80-like protein [Cucumis melo var. makuwa]	[more]
XP_038884546.1	3.21e-37	78.02	kinetochore protein NDC80 homolog [Benincasa hispida]	[more]
XP_022984383.1	9.44e-34	72.83	kinetochore protein NDC80 homolog [Cucurbita maxima]	[more]
XP_023553517.1	1.81e-33	72.83	kinetochore protein NDC80 homolog [Cucurbita pepo subsp. pepo]	[more]
KAG6576966.1	6.59e-33	70.65	Kinetochore protein NDC80-like protein, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of IVF0011716 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54630.1	8.8e-15	42.35	CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46681:SF1	KINETOCHORE PROTEIN NDC80 HOMOLOG	coord: 1..90
None	No IPR available	PANTHER	PTHR46681	KINETOCHORE PROTEIN NDC80 HOMOLOG	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011716.1	IVF0011716.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051315	attachment of mitotic spindle microtubules to kinetochore
biological_process	GO:0051301	cell division
cellular_component	GO:0031262	Ndc80 complex