IVF0011706 (gene) Melon (IVF77) v1

Overview


Name	IVF0011706
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Acetyl-CoA carboxylase 1-like
Location	chr11: 5848388 .. 5848552 (-)
RNA-Seq Expression	IVF0011706
Synteny	IVF0011706

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGAAAGGGGAAGGCCTTTAATAACACTAGAGTGAAGCATAGAGTGAAGCAGACGATTAAGGTGCCCACGATTAGTAACAAATTAGCAGATATGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCATACCCAAGGTATATAA

mRNA sequence

ATGGTAGGAAAGGGGAAGGCCTTTAATAACACTAGAGTGAAGCATAGAGTGAAGCAGACGATTAAGGTGCCCACGATTAGTAACAAATTAGCAGATATGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCATACCCAAGGTATATAA

Coding sequence (CDS)

ATGGTAGGAAAGGGGAAGGCCTTTAATAACACTAGAGTGAAGCATAGAGTGAAGCAGACGATTAAGGTGCCCACGATTAGTAACAAATTAGCAGATATGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCATACCCAAGGTATATAA

Protein sequence

MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQGI

Homology

[Close]

BLAST of IVF0011706 vs. ExPASy TrEMBL
Match: A0A5A7TKJ7 (Triacylglycerol lipase 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G007180 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQ 53
           + GKGKAFNNTRVKHRVK +IKVPTISNKLADMMIIHGGNMAKSQS+VL TQ
Sbjct: 299 ITGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKVLRTQ 350

[Close]

BLAST of IVF0011706 vs. ExPASy TrEMBL
Match: A0A5A7TLF6 (Transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00590 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-16
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQ 53
           ++ K KAFNNTRVKHRVK++IKVPTISN+LADMMIIHGGNMAKSQSRVLHTQ
Sbjct: 141 LIRKEKAFNNTRVKHRVKRSIKVPTISNRLADMMIIHGGNMAKSQSRVLHTQ 192

[Close]

BLAST of IVF0011706 vs. ExPASy TrEMBL
Match: A0A5D3DTC4 (Heat stress transcription factor A-2d-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00780 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-15
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRV 49
           + GKGKAFNNTRVKHRVK++IKVPTISNKLADMMIIHGGNMAKSQS++
Sbjct: 302 ITGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSKI 349

[Close]

BLAST of IVF0011706 vs. ExPASy TrEMBL
Match: A0A5A7U8V0 (Acetyl-CoA carboxylase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00940 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.8e-15
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRV 49
           + GKGKAFNNTRVKHRVK +IKVPTISNKLADMMIIHGGNMAKSQS++
Sbjct: 118 VTGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKI 165

[Close]

BLAST of IVF0011706 vs. ExPASy TrEMBL
Match: A0A5A7UHW8 (Triacylglycerol lipase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G00080 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRV 49
           + GKGKAFNNTRVKHRVK+ IKVPTISNKL D+MIIHGGNMAKSQS++
Sbjct: 224 ITGKGKAFNNTRVKHRVKRYIKVPTISNKLVDVMIIHGGNMAKSQSKI 271

[Close]

BLAST of IVF0011706 vs. NCBI nr
Match: KAA0042275.1 (transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 2.41e-21
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQ 52
           ++ K KAFNNTRVKHRVK++IKVPTISN+LADMMIIHGGNMAKSQSRVLHTQ
Sbjct: 141 LIRKEKAFNNTRVKHRVKRSIKVPTISNRLADMMIIHGGNMAKSQSRVLHTQ 192

[Close]

BLAST of IVF0011706 vs. NCBI nr
Match: KAA0042207.1 (triacylglycerol lipase 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 4.33e-21
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQ 52
           + GKGKAFNNTRVKHRVK +IKVPTISNKLADMMIIHGGNMAKSQS+VL TQ
Sbjct: 299 ITGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKVLRTQ 350

[Close]

BLAST of IVF0011706 vs. NCBI nr
Match: KAA0051708.1 (acetyl-CoA carboxylase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 3.35e-20
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRV 48
           + GKGKAFNNTRVKHRVK +IKVPTISNKLADMMIIHGGNMAKSQS++
Sbjct: 118 VTGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKI 165

[Close]

BLAST of IVF0011706 vs. NCBI nr
Match: TYK26778.1 (heat stress transcription factor A-2d-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.44e-19
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRV 48
           + GKGKAFNNTRVKHRVK++IKVPTISNKLADMMIIHGGNMAKSQS++
Sbjct: 302 ITGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSKI 349

[Close]

BLAST of IVF0011706 vs. NCBI nr
Match: KAA0054890.1 (triacylglycerol lipase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 3.84e-18
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKQTIKVPTISNKLADMMIIHGGNMAKSQSRV 48
           + GKGKAFNNTRVKHRVK+ IKVPTISNKL D+MIIHGGNMAKSQS++
Sbjct: 224 ITGKGKAFNNTRVKHRVKRYIKVPTISNKLVDVMIIHGGNMAKSQSKI 271

The following BLAST results are available for this feature:

BLAST of IVF0011706 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011706 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKJ7	1.6e-16	88.46	Triacylglycerol lipase 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5A7TLF6	2.1e-16	86.54	Transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 OS=Cucumis melo var. ...	[more]
A0A5D3DTC4	3.9e-15	87.50	Heat stress transcription factor A-2d-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7U8V0	8.8e-15	87.50	Acetyl-CoA carboxylase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UHW8	7.4e-14	83.33	Triacylglycerol lipase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0011706 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042275.1	2.41e-21	86.54	transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Cucumis melo var. ma...	[more]
KAA0042207.1	4.33e-21	88.46	triacylglycerol lipase 1 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0051708.1	3.35e-20	87.50	acetyl-CoA carboxylase 1-like [Cucumis melo var. makuwa]	[more]
TYK26778.1	2.44e-19	87.50	heat stress transcription factor A-2d-like [Cucumis melo var. makuwa]	[more]
KAA0054890.1	3.84e-18	83.33	triacylglycerol lipase 1-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011706 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018872	Zn-cluster domain	PFAM	PF10533	Plant_zn_clust	coord: 12..32 e-value: 3.0E-7 score: 30.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011706.2	IVF0011706.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003714	transcription corepressor activity