IVF0011699 (gene) Melon (IVF77) v1

Overview


Name	IVF0011699
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr09: 15464635 .. 15464802 (-)
RNA-Seq Expression	IVF0011699
Synteny	IVF0011699

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGACGAGGTTGACGACGTGGACGAGGGAGACTCCGCGTACGCGACGACCACCACTATAGAAGACATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCACAACAAACTAGCTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACGAGGTTGACGACGTGGACGAGGGAGACTCCGCGTACGCGACGACCACCACTATAGAAGACATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCACAACAAACTAGCTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGAGGTTGACGACGTGGACGAGGGAGACTCCGCGTACGCGACGACCACCACTATAGAAGACATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCACAACAAACTAGCTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA

Homology

[Close]

BLAST of IVF0011699 vs. ExPASy TrEMBL
Match: A0A5A7VGD3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00510 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 56
           MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA
Sbjct: 103 MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 157

[Close]

BLAST of IVF0011699 vs. ExPASy TrEMBL
Match: A0A1S3BNP1 (uncharacterized protein LOC103492066 OS=Cucumis melo OX=3656 GN=LOC103492066 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 56
           MTYCD+VDDVDEGD AYATTTTIE+IHYIEMTNEWSQW +KLAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

[Close]

BLAST of IVF0011699 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.1e-20
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 56
          MTYCD++DDVDEGDSAYATTT  EDIHYIE TNEWSQW ++LAESMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0011699 vs. ExPASy TrEMBL
Match: A0A5A7UJ27 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00570 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQL 53
           MTYCD+VDDVDEGD AYATTTTIE+IHYIEMTNEWSQW +KLAESMFTDWQL
Sbjct: 241 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 292

[Close]

BLAST of IVF0011699 vs. ExPASy TrEMBL
Match: A0A5D3DXP6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00500 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQL 53
          MTYCD+VDDVDEGD AYATTTTIE+IHYIEMTNEWSQW +KLAESMFTDWQL
Sbjct: 1  MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 52

[Close]

BLAST of IVF0011699 vs. NCBI nr
Match: KAA0066137.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15182.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 4.34e-33
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 55
           MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA
Sbjct: 103 MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 157

[Close]

BLAST of IVF0011699 vs. NCBI nr
Match: XP_008450472.1 (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 110 bits (275), Expect = 1.08e-28
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 55
           MTYCD+VDDVDEGD AYATTTTIE+IHYIEMTNEWSQW +KLAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

[Close]

BLAST of IVF0011699 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 1.47e-28
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 55
          MTYCD++DDVDEGDSAYATTT  EDIHYIE TNEWSQW ++LAESMFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0011699 vs. NCBI nr
Match: KAA0059918.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24865.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 1.46e-26
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1   MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQLRNA 55
           MTYCD+VDDVDEG+SAYATTTT ED+HYIE  NEWSQWH++LA+SMFTDWQL NA
Sbjct: 53  MTYCDDVDDVDEGNSAYATTTTTEDVHYIETKNEWSQWHDELAKSMFTDWQLCNA 107

[Close]

BLAST of IVF0011699 vs. NCBI nr
Match: TYK28139.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 2.24e-26
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MTYCDEVDDVDEGDSAYATTTTIEDIHYIEMTNEWSQWHNKLAESMFTDWQL 52
          MTYCD+VDDVDEGD AYATTTTIE+IHYIEMTNEWSQW +KLAESMFTDWQL
Sbjct: 1  MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQL 52

The following BLAST results are available for this feature:

BLAST of IVF0011699 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011699 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGD3	2.8e-24	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BNP1	2.9e-21	90.91	uncharacterized protein LOC103492066 OS=Cucumis melo OX=3656 GN=LOC103492066 PE=...	[more]
A0A5D3BDZ0	7.1e-20	85.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UJ27	1.6e-19	90.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DXP6	1.6e-19	90.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0011699 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066137.1	4.34e-33	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK15182.1 retrotransposon p...	[more]
XP_008450472.1	1.08e-28	90.91	PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo]	[more]
KAA0054051.1	1.47e-28	85.45	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p...	[more]
KAA0059918.1	1.46e-26	81.82	retrotransposon protein [Cucumis melo var. makuwa] >TYK24865.1 retrotransposon p...	[more]
TYK28139.1	2.24e-26	90.38	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011699 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011699.1	IVF0011699.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0046872	metal ion binding