IVF0011678 (gene) Melon (IVF77) v1

Overview


Name	IVF0011678
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cold-regulated 413 plasma membrane protein 2-like protein
Location	chr08: 3174917 .. 3176708 (-)
RNA-Seq Expression	IVF0011678
Synteny	IVF0011678

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATTTTAAACTATAAAATGCATTCTAGGTGTTTGTATAAATGCCGCACTGGCTCTTGTTTCCCAAAGCTTTCTCATTTTTCGTTTCCTTGTAGACCCAGAAGCAAAAATGGGGAGGATGGCGTATTTGGCTCTCAATAGTGATCCTCTAATGGAGGAGTTGATTAATTCTGATATCCATGAGCTTAAAATTGCAGCCACTAGGCTTATTGAACATGCCACCAAGCTCGGTGGAAAGGGTCTTGGCACTTCCTTTTCAAATGGCTCGCTTCCTTTGCTGCCATGTGGGTGCTTTATTTCTAATGTAAGGGCTTTTGTTTTGTTTCTGACATTCTAAAATTTAACATCATCCTGCAGTTACTTGTTGATTTTGGATCGTACGAACTGGAGAACAAATATGCTTACTTCACTTCTTGTCCCTTACATTTTCTTCAGTCTTCCTCAAGGGATTTTTAACTTATTGAGGTGATACTAACTCTGATTTCCTTGTTGGTTTAATTTTAAGCTTTATCCAAAGGTATTTGAATGTTAACTAATATTGTGTTCTTCTTGATTTTCTTAAGAGGGGATGTTGGGAAATGGATTGCTTTCGTTGCAGTGGTATTGAGGCTCTTCTTTCCGCGACATTTCCCAGGTAAGCACCATCATTATTTGTTTAGTTTTCCACCACTTTTCTTGTCGATCGGTATCATGTCGCTGTGTATAATAAAGGGTTGTTTTGAATTTATAATACATTTCAATCATTAACTACAAAAGGTATTTGTCAATCAGTACAACCTTGTATTTGTTGAGGTGACATGATGAATTATTTAAACTTGGCTTAGCGAGTGGTTGATAGAGAATGTGGCTTTGATAGTTGACATACTAATGAAAGAACAAGCTTTAGGTTTAAGAATGTTTTCCTCTCTCTAAACTTTTGATAATTTTGCCTCTTTTGACCGGTAGTCTCTCCCTTTTTGATCCCTTAGACCATGTTAGGTAATTATTTGATTTTTTTTCCTTTTTCTGAAGATTGGACTTGTAAACACTTATTCACCTTCTAAACATTTTGTTTACTATCTACCTTTTACTAATATTTTCAAAAATCAAGTCAAGTTTTTTGAAAAGTAAAAACAAGTTTTTGTCTTTAGAGTTTGACTAAGAATTAGCTCTTTTACTTCAAAAGATGCAAAGCATTATGAAAGTTTGGATGAAAATAGCCTTAATTTTCAAAAACTAACTAATTACCAAACGAAACATTAACTTGTAGAACCACATTTTCAAATTTGAAGCACTGCTGATCTTGGTCAATGTGATATGTCATAAACAGTCCGAGCTATGATTAACTTGGTCCTATCTTCAATAGTTCGTTGCAACAAAAAATGAATTGAAGTTGGGTTTTTGCAGATTGGTTGGAGATTCCAGGGTCATTGATTCTGCTTCTAGTGGCAACACCAGGGTTCTTTGCACATACCTTGAGAGACCACTGGGCTGGGGTACTGATATGTTTGATAATGGATGTTACCTTCTCCAAGAGCACATTCGTGCATCTGGTGGCTTCAGAAACTCTTTTACTCAAACTCATGGAATTTCCAATACCATTGGAATCGTCCTCCTCCTTGTGTTCCCTGTTTGGGCCATGGTTGCTCGTTTCTTCTAGCTCTCTATACAACTCTCTCCCTTCCCATTTCTTCAATTTTGCAGCTCTCCCTTTGCAAAACTGAAGTAAAAGATTTTGTAACTTCTTTGTTCTTTTCTTTGTAGCCCTCTTTATCTATATATCATCAATATGAGAAATTGAGTTTTTGTTGTTC

mRNA sequence

CGATTTTAAACTATAAAATGCATTCTAGGTGTTTGTATAAATGCCGCACTGGCTCTTGTTTCCCAAAGCTTTCTCATTTTTCGTTTCCTTGTAGACCCAGAAGCAAAAATGGGGAGGATGGCGTATTTGGCTCTCAATAGTGATCCTCTAATGGAGGAGTTGATTAATTCTGATATCCATGAGCTTAAAATTGCAGCCACTAGGCTTATTGAACATGCCACCAAGCTCGGTGGAAAGGGTCTTGGCACTTCCTTTTCAAATGGCTCGCTTCCTTTGCTGCCATTTACTTGTTGATTTTGGATCGTACGAACTGGAGAACAAATATGCTTACTTCACTTCTTGTCCCTTACATTTTCTTCAGTCTTCCTCAAGGGATTTTTAACTTATTGAGAGGGGATGTTGGGAAATGGATTGCTTTCGTTGCAGTGGTATTGAGGCTCTTCTTTCCGCGACATTTCCCAGATTGGTTGGAGATTCCAGGGTCATTGATTCTGCTTCTAGTGGCAACACCAGGGTTCTTTGCACATACCTTGAGAGACCACTGGGCTGGGGTACTGATATGTTTGATAATGGATGTTACCTTCTCCAAGAGCACATTCGTGCATCTGGTGGCTTCAGAAACTCTTTTACTCAAACTCATGGAATTTCCAATACCATTGGAATCGTCCTCCTCCTTGTGTTCCCTGTTTGGGCCATGGTTGCTCGTTTCTTCTAGCTCTCTATACAACTCTCTCCCTTCCCATTTCTTCAATTTTGCAGCTCTCCCTTTGCAAAACTGAAGTAAAAGATTTTGTAACTTCTTTGTTCTTTTCTTTGTAGCCCTCTTTATCTATATATCATCAATATGAGAAATTGAGTTTTTGTTGTTC

Coding sequence (CDS)

ATGCTTACTTCACTTCTTGTCCCTTACATTTTCTTCAGTCTTCCTCAAGGGATTTTTAACTTATTGAGAGGGGATGTTGGGAAATGGATTGCTTTCGTTGCAGTGGTATTGAGGCTCTTCTTTCCGCGACATTTCCCAGATTGGTTGGAGATTCCAGGGTCATTGATTCTGCTTCTAGTGGCAACACCAGGGTTCTTTGCACATACCTTGAGAGACCACTGGGCTGGGGTACTGATATGTTTGATAATGGATGTTACCTTCTCCAAGAGCACATTCGTGCATCTGGTGGCTTCAGAAACTCTTTTACTCAAACTCATGGAATTTCCAATACCATTGGAATCGTCCTCCTCCTTGTGTTCCCTGTTTGGGCCATGGTTGCTCGTTTCTTCTAGCTCTCTATACAACTCTCTCCCTTCCCATTTCTTCAATTTTGCAGCTCTCCCTTTGCAAAACTGA

Protein sequence

MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVATPGFFAHTLRDHWAGVLICLIMDVTFSKSTFVHLVASETLLLKLMEFPIPLESSSSLCSLFGPWLLVSSSSLYNSLPSHFFNFAALPLQN

Homology

[Close]

BLAST of IVF0011678 vs. ExPASy Swiss-Prot
Match: Q9SVL6 (Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana OX=3702 GN=COR413PM2 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-29
Identity = 61/83 (73.49%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLL+PYIF SLP  IFN L GDVGKWIAFVAVVLRLFFP+HFPDWLE+PGSLILLLV
Sbjct: 74  MLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLV 133

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 84
            +P F AH +R  W G +I L +
Sbjct: 134 VSPHFLAHHIRGTWIGTVISLFI 156

[Close]

BLAST of IVF0011678 vs. ExPASy Swiss-Prot
Match: O23164 (Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=At4g37220 PE=2 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-25
Identity = 49/83 (59.04%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLT+LLVPYIFF+LP  IF    GD GKWIA +A+++RLFFP+ FP+WLEIP +LIL++V
Sbjct: 73  MLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPEWLEIPVALILIVV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 84
            +P   A TLR+ W G +ICL++
Sbjct: 133 VSPSLIAWTLRESWVGAVICLVI 155

[Close]

BLAST of IVF0011678 vs. ExPASy Swiss-Prot
Match: Q9XIM7 (Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana OX=3702 GN=COR413PM1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLL+PYIFFSLP  IF + RG++GKWIAFVAVV++LFFP+H  ++LE+P +L+LL V
Sbjct: 71  MLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVALVLLAV 130

Query: 61  ATPGFFAHTLRDHWAGVLICL 82
             P   A T RD W G+ ICL
Sbjct: 131 VAPNLIAGTFRDSWIGLAICL 151

[Close]

BLAST of IVF0011678 vs. ExPASy Swiss-Prot
Match: O64834 (Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis thaliana OX=3702 GN=At2g23680 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.3e-16
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           ++ SLL PY+F SLP  IF +LR  VGKWIA + V+LRLF P HF + LEIPG+ ILL+V
Sbjct: 56  IMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILLIV 115

Query: 61  ATPGFFAHTLRD--HWAGVLICLI 83
            TP       RD   + G  +CL+
Sbjct: 116 VTPSDIGAIFRDDLRYTGGDVCLL 139

[Close]

BLAST of IVF0011678 vs. ExPASy Swiss-Prot
Match: F4I1G5 (Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=COR413IM2 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.8e-05
Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 4   SLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLVATP 63
           S +VP      P GI + ++G+ G W AF+A++ RLFF   FP  LE+P   +LL++  P
Sbjct: 108 SFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFF--SFPVELELPFIALLLVIVAP 167

Query: 64  GFFAHTLRDHWAGVLICLIMDVTFSKSTFVHLVASETL 102
            +   ++R    G ++ L +    +   F H   + TL
Sbjct: 168 -YQVMSIRGKQEGAILSLAISCFLA---FQHFSRAGTL 199

[Close]

BLAST of IVF0011678 vs. ExPASy TrEMBL
Match: A0A1S3B0J4 (cold-regulated 413 plasma membrane protein 2-like OS=Cucumis melo OX=3656 GN=LOC103484724 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 9.9e-40
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV
Sbjct: 73  MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 84
           ATPGFFAHTLRDHWAGVLICLI+
Sbjct: 133 ATPGFFAHTLRDHWAGVLICLII 155

[Close]

BLAST of IVF0011678 vs. ExPASy TrEMBL
Match: A0A5D3CRA7 (Cold-regulated 413 plasma membrane protein 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005310 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 9.9e-40
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV
Sbjct: 73  MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 84
           ATPGFFAHTLRDHWAGVLICLI+
Sbjct: 133 ATPGFFAHTLRDHWAGVLICLII 155

[Close]

BLAST of IVF0011678 vs. ExPASy TrEMBL
Match: A0A0A0KFI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G488350 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.4e-39
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLPQGIFNLLRGD GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV
Sbjct: 73  MLTSLLVPYIFFSLPQGIFNLLRGDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 84
           ATPGFFAHTLRDHWAGV+ICLI+
Sbjct: 133 ATPGFFAHTLRDHWAGVVICLII 155

[Close]

BLAST of IVF0011678 vs. ExPASy TrEMBL
Match: A0A6J1BUH1 (cold-regulated 413 plasma membrane protein 2-like OS=Momordica charantia OX=3673 GN=LOC111005887 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.1e-36
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLPQGIF+LLR D GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILL+V
Sbjct: 73  MLTSLLVPYIFFSLPQGIFDLLREDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLVV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 84
           A PGFFAHTL+DHWAGV+ICL++
Sbjct: 133 AAPGFFAHTLKDHWAGVVICLVI 155

[Close]

BLAST of IVF0011678 vs. ExPASy TrEMBL
Match: A0A6J1KS22 (cold-regulated 413 plasma membrane protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111496737 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.6e-35
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLPQGIF+L+RGD GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV
Sbjct: 95  MLTSLLVPYIFFSLPQGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 154

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 84
           A PGFF H+LRDH AGV+ICLI+
Sbjct: 155 AAPGFFVHSLRDHLAGVVICLII 177

[Close]

BLAST of IVF0011678 vs. NCBI nr
Match: XP_008440182.1 (PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Cucumis melo] >XP_008440183.1 PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Cucumis melo] >TYK12936.1 cold-regulated 413 plasma membrane protein 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (435), Expect = 3.67e-51
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV
Sbjct: 73  MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 83
           ATPGFFAHTLRDHWAGVLICLI+
Sbjct: 133 ATPGFFAHTLRDHWAGVLICLII 155

[Close]

BLAST of IVF0011678 vs. NCBI nr
Match: XP_004142025.1 (cold-regulated 413 plasma membrane protein 2 [Cucumis sativus] >KGN48465.1 hypothetical protein Csa_002903 [Cucumis sativus])

HSP 1 Score: 169 bits (428), Expect = 4.22e-50
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLPQGIFNLLRGD GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV
Sbjct: 73  MLTSLLVPYIFFSLPQGIFNLLRGDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 83
           ATPGFFAHTLRDHWAGV+ICLI+
Sbjct: 133 ATPGFFAHTLRDHWAGVVICLII 155

[Close]

BLAST of IVF0011678 vs. NCBI nr
Match: XP_038883183.1 (cold-regulated 413 plasma membrane protein 2-like [Benincasa hispida])

HSP 1 Score: 168 bits (426), Expect = 8.48e-50
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLPQGIF+LLRGD GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV
Sbjct: 73  MLTSLLVPYIFFSLPQGIFDLLRGDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 83
           ATPGFFAHTLRDHWAGVLICLI+
Sbjct: 133 ATPGFFAHTLRDHWAGVLICLII 155

[Close]

BLAST of IVF0011678 vs. NCBI nr
Match: XP_022133246.1 (cold-regulated 413 plasma membrane protein 2-like [Momordica charantia])

HSP 1 Score: 159 bits (403), Expect = 2.59e-46
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLPQGIF+LLR D GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILL+V
Sbjct: 73  MLTSLLVPYIFFSLPQGIFDLLREDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLVV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 83
           A PGFFAHTL+DHWAGV+ICL++
Sbjct: 133 AAPGFFAHTLKDHWAGVVICLVI 155

[Close]

BLAST of IVF0011678 vs. NCBI nr
Match: XP_022962766.1 (cold-regulated 413 plasma membrane protein 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 155 bits (391), Expect = 1.09e-44
Identity = 73/83 (87.95%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLLVPYIFFSLP+GIF+L+RGD GKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV
Sbjct: 58  MLTSLLVPYIFFSLPEGIFDLVRGDAGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 117

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 83
           A PGFF H+LRDH AGV+ICLI+
Sbjct: 118 AAPGFFVHSLRDHLAGVVICLII 140

[Close]

BLAST of IVF0011678 vs. TAIR 10
Match: AT3G50830.1 (cold-regulated 413-plasma membrane 2 )

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-30
Identity = 61/83 (73.49%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLL+PYIF SLP  IFN L GDVGKWIAFVAVVLRLFFP+HFPDWLE+PGSLILLLV
Sbjct: 74  MLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLV 133

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 84
            +P F AH +R  W G +I L +
Sbjct: 134 VSPHFLAHHIRGTWIGTVISLFI 156

[Close]

BLAST of IVF0011678 vs. TAIR 10
Match: AT4G37220.1 (Cold acclimation protein WCOR413 family )

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-26
Identity = 49/83 (59.04%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLT+LLVPYIFF+LP  IF    GD GKWIA +A+++RLFFP+ FP+WLEIP +LIL++V
Sbjct: 73  MLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPEWLEIPVALILIVV 132

Query: 61  ATPGFFAHTLRDHWAGVLICLIM 84
            +P   A TLR+ W G +ICL++
Sbjct: 133 VSPSLIAWTLRESWVGAVICLVI 155

[Close]

BLAST of IVF0011678 vs. TAIR 10
Match: AT2G15970.2 (cold regulated 413 plasma membrane 1 )

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-25
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLL+PYIFFSLP  IF + RG++GKWIAFVAVV++LFFP+H  ++LE+P +L+LL V
Sbjct: 71  MLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVALVLLAV 130

Query: 61  ATPGFFAHTLRDHWAGVLICLIMDVTFSKSTF 93
             P   A T RD W G+ ICL +  +FS   F
Sbjct: 131 VAPNLIAGTFRDSWIGLAICLGIGFSFSICLF 162

[Close]

BLAST of IVF0011678 vs. TAIR 10
Match: AT2G15970.1 (cold regulated 413 plasma membrane 1 )

HSP 1 Score: 110.9 bits (276), Expect = 8.9e-25
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           MLTSLL+PYIFFSLP  IF + RG++GKWIAFVAVV++LFFP+H  ++LE+P +L+LL V
Sbjct: 71  MLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVALVLLAV 130

Query: 61  ATPGFFAHTLRDHWAGVLICL 82
             P   A T RD W G+ ICL
Sbjct: 131 VAPNLIAGTFRDSWIGLAICL 151

[Close]

BLAST of IVF0011678 vs. TAIR 10
Match: AT2G23680.1 (Cold acclimation protein WCOR413 family )

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-17
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 1   MLTSLLVPYIFFSLPQGIFNLLRGDVGKWIAFVAVVLRLFFPRHFPDWLEIPGSLILLLV 60
           ++ SLL PY+F SLP  IF +LR  VGKWIA + V+LRLF P HF + LEIPG+ ILL+V
Sbjct: 56  IMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILLIV 115

Query: 61  ATPGFFAHTLRD--HWAGVLICLI 83
            TP       RD   + G  +CL+
Sbjct: 116 VTPSDIGAIFRDDLRYTGGDVCLL 139

The following BLAST results are available for this feature:

BLAST of IVF0011678 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVL6	2.0e-29	73.49	Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O23164	6.6e-25	59.04	Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9XIM7	1.3e-23	61.73	Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O64834	7.3e-16	51.19	Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4I1G5	5.8e-05	31.63	Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thalia...	[more]

BLAST of IVF0011678 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B0J4	9.9e-40	98.80	cold-regulated 413 plasma membrane protein 2-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3CRA7	9.9e-40	98.80	Cold-regulated 413 plasma membrane protein 2-like protein OS=Cucumis melo var. m...	[more]
A0A0A0KFI4	6.4e-39	96.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G488350 PE=3 SV=1	[more]
A0A6J1BUH1	5.1e-36	89.16	cold-regulated 413 plasma membrane protein 2-like OS=Momordica charantia OX=3673...	[more]
A0A6J1KS22	5.6e-35	89.16	cold-regulated 413 plasma membrane protein 2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of IVF0011678 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440182.1	3.67e-51	98.80	PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Cucumis melo] >XP_...	[more]
XP_004142025.1	4.22e-50	96.39	cold-regulated 413 plasma membrane protein 2 [Cucumis sativus] >KGN48465.1 hypot...	[more]
XP_038883183.1	8.48e-50	96.39	cold-regulated 413 plasma membrane protein 2-like [Benincasa hispida]	[more]
XP_022133246.1	2.59e-46	89.16	cold-regulated 413 plasma membrane protein 2-like [Momordica charantia]	[more]
XP_022962766.1	1.09e-44	87.95	cold-regulated 413 plasma membrane protein 2 isoform X2 [Cucurbita moschata]	[more]

BLAST of IVF0011678 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50830.1	1.4e-30	73.49	cold-regulated 413-plasma membrane 2	[more]
AT4G37220.1	4.7e-26	59.04	Cold acclimation protein WCOR413 family	[more]
AT2G15970.2	1.4e-25	57.61	cold regulated 413 plasma membrane 1	[more]
AT2G15970.1	8.9e-25	61.73	cold regulated 413 plasma membrane 1	[more]
AT2G23680.1	5.2e-17	51.19	Cold acclimation protein WCOR413 family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008892	Cold-regulated 413 protein	PFAM	PF05562	WCOR413	coord: 1..84 e-value: 4.4E-39 score: 134.3
IPR008892	Cold-regulated 413 protein	PANTHER	PTHR33596	COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2	coord: 1..85
None	No IPR available	PANTHER	PTHR33596:SF20	COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2-LIKE	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011678.2	IVF0011678.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane