IVF0011647 (gene) Melon (IVF77) v1

Overview


Name	IVF0011647
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr04: 12510083 .. 12510736 (+)
RNA-Seq Expression	IVF0011647
Synteny	IVF0011647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGTCGCCCTTCCTTCCGTCGCGTCTCTGTCTACTCAAAACGCCACGTCTTCGTTTGTCAAGGTGAGCGATCCCTTGTCGTTTCAGCGCGTTCGCCTCGAACCTCCGACGTTTGTTGAAGCCTTACCATTTGTGTCGTCGTCTCTTCTTCCTCGTGTGCCGTCCGATGGAGCACAACCATCGCCGTCACATTTCTTAAAGCCGCGCACTAAACCTGAGCCGACCCAAGGCATCTCCTCTTCCCAGCCAAGCCACACTTGTTTCTCCCTTGCTCATCGCTGTTTGACTCACTTAGTGTTCTGTCACTTTTGCCTCATTGTAAGTTTTGAGGTAAGGATAAAATTGTGAGTTTTGTAGTTTTTCCATAGCCGTTTTGAGTGTAAATGTCGGATTAAATTGTTGGATTAATTAGTCGGGTTAACTTTTGATTCTTGAAGGTGCTTTAGAGAGGTGATGCTTGAATTCTCAGATTATTCAGCAAGTTCCGTTGGAGTTCGATTCTCCATTTTGCTTGGGTAAGTTGTAGAAATTTGGAATTGGGTGTTTGGTTGAGTGACTTTGCTTATTATAGTATTTGAACCCTTATATCTACATTTAGGTGGATTCATTGGACTTCGATTTAAGCAAGGATTTTTAGCTATATCGAGGTAA

mRNA sequence

ATGCCAGTCGCCCTTCCTTCCGTCGCGTCTCTGTCTACTCAAAACGCCACGTCTTCGTTTGTCAAGGTGAGCGATCCCTTGTCGTTTCAGCGCGTTCGCCTCGAACCTCCGACGTTTGTTGAAGCCTTACCATTTGTGTCGTCGTCTCTTCTTCCTCGTGTGCCGTCCGATGGAGCACAACCATCGCCGTCACATTTCTTAAAGCCGCGCACTAAACCTGAGCCGACCCAAGGCATCTCCTCTTCCCAGCCAAGCCACACTTGTTTCTCCCTTGCTCATCGCTGTTTGACTCACTTAGTGTTCTGTCACTTTTGCCTCATTGTAAGTTTTGAGATTATTCAGCAAGTTCCGTTGGAGTTCGATTCTCCATTTTGCTTGGGTGGATTCATTGGACTTCGATTTAAGCAAGGATTTTTAGCTATATCGAGGTAA

Coding sequence (CDS)

ATGCCAGTCGCCCTTCCTTCCGTCGCGTCTCTGTCTACTCAAAACGCCACGTCTTCGTTTGTCAAGGTGAGCGATCCCTTGTCGTTTCAGCGCGTTCGCCTCGAACCTCCGACGTTTGTTGAAGCCTTACCATTTGTGTCGTCGTCTCTTCTTCCTCGTGTGCCGTCCGATGGAGCACAACCATCGCCGTCACATTTCTTAAAGCCGCGCACTAAACCTGAGCCGACCCAAGGCATCTCCTCTTCCCAGCCAAGCCACACTTGTTTCTCCCTTGCTCATCGCTGTTTGACTCACTTAGTGTTCTGTCACTTTTGCCTCATTGTAAGTTTTGAGATTATTCAGCAAGTTCCGTTGGAGTTCGATTCTCCATTTTGCTTGGGTGGATTCATTGGACTTCGATTTAAGCAAGGATTTTTAGCTATATCGAGGTAA

Protein sequence

MPVALPSVASLSTQNATSSFVKVSDPLSFQRVRLEPPTFVEALPFVSSSLLPRVPSDGAQPSPSHFLKPRTKPEPTQGISSSQPSHTCFSLAHRCLTHLVFCHFCLIVSFEIIQQVPLEFDSPFCLGGFIGLRFKQGFLAISR

Homology

[Close]

BLAST of IVF0011647 vs. ExPASy TrEMBL
Match: A0A5A7T9G9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001520 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.1e-69
Identity = 139/143 (97.20%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MPVALPSVASLSTQNATSSFVKVSDPLSFQRVRLEPPTFVEALPFVSSSLLPRVPSDGAQ 60
           MPVALPSVASLSTQNATSSFVKVSDPLSFQRVRLEPPTFVEALPFVSSSLLPRVPSDGAQ
Sbjct: 1   MPVALPSVASLSTQNATSSFVKVSDPLSFQRVRLEPPTFVEALPFVSSSLLPRVPSDGAQ 60

Query: 61  PSPSHFLKPRTKPEPTQGISSSQPSHTCFSLAHRCLTHLVFCHFCLIVSFEIIQQVPLEF 120
           PSPSHFLKPRTKPEPTQGISSSQPSHTCFSLAHRCLTHLVFCHFCLI    IIQQVPLEF
Sbjct: 61  PSPSHFLKPRTKPEPTQGISSSQPSHTCFSLAHRCLTHLVFCHFCLI----IIQQVPLEF 120

Query: 121 DSPFCLGGFIGLRFKQGFLAISR 144
           DSPFCLGGFIGLRFKQGFLAISR
Sbjct: 121 DSPFCLGGFIGLRFKQGFLAISR 139

[Close]

BLAST of IVF0011647 vs. NCBI nr
Match: KAA0037969.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (696), Expect = 8.33e-89
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 1   MPVALPSVASLSTQNATSSFVKVSDPLSFQRVRLEPPTFVEALPFVSSSLLPRVPSDGAQ 60
           MPVALPSVASLSTQNATSSFVKVSDPLSFQRVRLEPPTFVEALPFVSSSLLPRVPSDGAQ
Sbjct: 1   MPVALPSVASLSTQNATSSFVKVSDPLSFQRVRLEPPTFVEALPFVSSSLLPRVPSDGAQ 60

Query: 61  PSPSHFLKPRTKPEPTQGISSSQPSHTCFSLAHRCLTHLVFCHFCLIVSFEIIQQVPLEF 120
           PSPSHFLKPRTKPEPTQGISSSQPSHTCFSLAHRCLTHLVFCHFCLI+    IQQVPLEF
Sbjct: 61  PSPSHFLKPRTKPEPTQGISSSQPSHTCFSLAHRCLTHLVFCHFCLII----IQQVPLEF 120

Query: 121 DSPFCLGGFIGLRFKQGFLAISR 143
           DSPFCLGGFIGLRFKQGFLAISR
Sbjct: 121 DSPFCLGGFIGLRFKQGFLAISR 139

The following BLAST results are available for this feature:

BLAST of IVF0011647 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9G9	1.1e-69	97.20	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00152...	[more]

BLAST of IVF0011647 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037969.1	8.33e-89	96.50	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011647 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011647.1	IVF0011647.1	mRNA