IVF0011646 (gene) Melon (IVF77) v1

Overview


Name	IVF0011646
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Zf-CCHC domain-containing protein
Location	chr01: 15583251 .. 15583517 (-)
RNA-Seq Expression	IVF0011646
Synteny	IVF0011646

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGCTGGAGAAGAAATAACCCAGCTGCGGGGGATGATCGTGAGCAAGAAGAAGCGGAGGAAATCACCGCCCTCTCTCCAAAGATATTAATGATTCACTTGCTGGCTGTCGAGGAATCCTTGGGAGATCTTCACGACAAGTTTGATAGATTGTTAGAGAACTTTGAGGTGCTGAATCGAAGAATGGATGGAATGTCGGCGTCGCGGCGTATAGAAGCTGAAGTAGTAAATGGCCGTAATTGTGATGATAGACGAGGCCGATGA

mRNA sequence

ATGGCTGGCTGGAGAAGAAATAACCCAGCTGCGGGGGATGATCGTGAGCAAGAAGAAGCGGAGGAAATCACCGCCCTCTCTCCAAAGATATTAATGATTCACTTGCTGGCTGTCGAGGAATCCTTGGGAGATCTTCACGACAAGTTTGATAGATTGTTAGAGAACTTTGAGGTGCTGAATCGAAGAATGGATGGAATGTCGGCGTCGCGGCGTATAGAAGCTGAAGTAGTAAATGGCCGTAATTGTGATGATAGACGAGGCCGATGA

Coding sequence (CDS)

ATGGCTGGCTGGAGAAGAAATAACCCAGCTGCGGGGGATGATCGTGAGCAAGAAGAAGCGGAGGAAATCACCGCCCTCTCTCCAAAGATATTAATGATTCACTTGCTGGCTGTCGAGGAATCCTTGGGAGATCTTCACGACAAGTTTGATAGATTGTTAGAGAACTTTGAGGTGCTGAATCGAAGAATGGATGGAATGTCGGCGTCGCGGCGTATAGAAGCTGAAGTAGTAAATGGCCGTAATTGTGATGATAGACGAGGCCGATGA

Protein sequence

MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLNRRMDGMSASRRIEAEVVNGRNCDDRRGR

Homology

[Close]

BLAST of IVF0011646 vs. ExPASy TrEMBL
Match: A0A5D3CKV3 (Plasma membrane ATPase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001260 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
          MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN
Sbjct: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60

Query: 61 RRMDGMSASRRIEAEVVNGRNCD 84
          RRMDGMSASRRIEAEVVNG + D
Sbjct: 61 RRMDGMSASRRIEAEVVNGPDYD 83

[Close]

BLAST of IVF0011646 vs. ExPASy TrEMBL
Match: A0A5A7SLA2 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00360 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.8e-29
Identity = 69/88 (78.41%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
          MAG RRNNPAA DDREQEEAE+I AL PK   + LL V+ESLGDLH+KF+RLLENFE+LN
Sbjct: 12 MAGRRRNNPAAEDDREQEEAEDIAALPPKTSTVRLLVVKESLGDLHEKFNRLLENFELLN 71

Query: 61 RRMDGMSASRRIEAEVVNGRNCDDRRGR 89
          RRMDGM A  RIEAEVVNGRNCDDR GR
Sbjct: 72 RRMDGMLAPPRIEAEVVNGRNCDDRHGR 99

[Close]

BLAST of IVF0011646 vs. ExPASy TrEMBL
Match: A0A5D3DKV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00260 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-20
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
          MAG R   PAA D+REQ+EAEEIT LSP+   +HLLAVE+SLGDLHDKFD+++++ E LN
Sbjct: 1  MAGQRGAIPAAWDNREQQEAEEITVLSPRTSTVHLLAVEDSLGDLHDKFDKMMDSLETLN 60

Query: 61 RRMDGMSASRRIEAEVVNGRNCDDRRGR 89
          +RMDG+ A  RIEA VVN RN  ++ GR
Sbjct: 61 QRMDGLLAPARIEANVVNDRNDGNKGGR 88

[Close]

BLAST of IVF0011646 vs. ExPASy TrEMBL
Match: A0A5A7SPB6 (eIF-2-alpha kinase GCN2 isoform X5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00520 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1   MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
           MAGWR  NPAAGDD EQ+EAEEI ALSPK   I LLAVE+S  + H+KFDR+LE+FE+LN
Sbjct: 292 MAGWRAVNPAAGDDCEQKEAEEIAALSPKTSTIRLLAVEDSWEERHNKFDRMLESFEILN 351

Query: 61  RRMDGMSASRRIEA 75
           RRMD  SA+  +EA
Sbjct: 352 RRMDEPSAAPGVEA 365

[Close]

BLAST of IVF0011646 vs. ExPASy TrEMBL
Match: A0A5D3CJ99 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00470 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
          MAG R   PA GD+REQEE EE  ALSP+   +  LAVE+SLGDLH+KFDR+++  E L 
Sbjct: 1  MAGRREGIPATGDNREQEEVEENAALSPRTSTVCFLAVEDSLGDLHEKFDRVMDTLETLT 60

Query: 61 RRMDGMSASRRIEAEVVNGRNCDDRRGR 89
          RRMDG+ A  RIEA   N RN  +R GR
Sbjct: 61 RRMDGLPALARIEANANNDRNDGNRGGR 88

[Close]

BLAST of IVF0011646 vs. NCBI nr
Match: KAA0049687.1 (plasma membrane ATPase 1 [Cucumis melo var. makuwa] >TYK12185.1 plasma membrane ATPase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 3.58e-46
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
          MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN
Sbjct: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60

Query: 61 RRMDGMSASRRIEAEVVNGRNCD 83
          RRMDGMSASRRIEAEVVNG + D
Sbjct: 61 RRMDGMSASRRIEAEVVNGPDYD 83

[Close]

BLAST of IVF0011646 vs. NCBI nr
Match: KAA0031954.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 1.80e-36
Identity = 69/88 (78.41%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
          MAG RRNNPAA DDREQEEAE+I AL PK   + LL V+ESLGDLH+KF+RLLENFE+LN
Sbjct: 12 MAGRRRNNPAAEDDREQEEAEDIAALPPKTSTVRLLVVKESLGDLHEKFNRLLENFELLN 71

Query: 61 RRMDGMSASRRIEAEVVNGRNCDDRRGR 88
          RRMDGM A  RIEAEVVNGRNCDDR GR
Sbjct: 72 RRMDGMLAPPRIEAEVVNGRNCDDRHGR 99

[Close]

BLAST of IVF0011646 vs. NCBI nr
Match: KAA0056581.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK24263.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 1.55e-27
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
          MAG R   PAA D+REQ+EAEEIT LSP+   +HLLAVE+SLGDLHDKFD+++++ E LN
Sbjct: 1  MAGQRGAIPAAWDNREQQEAEEITVLSPRTSTVHLLAVEDSLGDLHDKFDKMMDSLETLN 60

Query: 61 RRMDGMSASRRIEAEVVNGRNCDDRRGR 88
          +RMDG+ A  RIEA VVN RN  ++ GR
Sbjct: 61 QRMDGLLAPARIEANVVNDRNDGNKGGR 88

[Close]

BLAST of IVF0011646 vs. NCBI nr
Match: KAA0033032.1 (eIF-2-alpha kinase GCN2 isoform X5 [Cucumis melo var. makuwa] >TYK03447.1 eIF-2-alpha kinase GCN2 isoform X5 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 1.75e-21
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1   MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
           MAGWR  NPAAGDD EQ+EAEEI ALSPK   I LLAVE+S  + H+KFDR+LE+FE+LN
Sbjct: 292 MAGWRAVNPAAGDDCEQKEAEEIAALSPKTSTIRLLAVEDSWEERHNKFDRMLESFEILN 351

Query: 61  RRMDGMSASRRIEA 74
           RRMD  SA+  +EA
Sbjct: 352 RRMDEPSAAPGVEA 365

[Close]

BLAST of IVF0011646 vs. NCBI nr
Match: TYK11204.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 2.31e-21
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 1  MAGWRRNNPAAGDDREQEEAEEITALSPKILMIHLLAVEESLGDLHDKFDRLLENFEVLN 60
          MAG R   PA GD+REQEE EE  ALSP+   +  LAVE+SLGDLH+KFDR+++  E L 
Sbjct: 1  MAGRREGIPATGDNREQEEVEENAALSPRTSTVCFLAVEDSLGDLHEKFDRVMDTLETLT 60

Query: 61 RRMDGMSASRRIEAEVVNGRNCDDRRGR 88
          RRMDG+ A  RIEA   N RN  +R GR
Sbjct: 61 RRMDGLPALARIEANANNDRNDGNRGGR 88

The following BLAST results are available for this feature:

BLAST of IVF0011646 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011646 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CKV3	1.5e-35	96.39	Plasma membrane ATPase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SLA2	7.8e-29	78.41	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DKV9	1.7e-20	62.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20...	[more]
A0A5A7SPB6	2.4e-17	67.57	eIF-2-alpha kinase GCN2 isoform X5 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5D3CJ99	5.3e-17	57.95	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22...	[more]

BLAST of IVF0011646 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049687.1	3.58e-46	96.39	plasma membrane ATPase 1 [Cucumis melo var. makuwa] >TYK12185.1 plasma membrane ...	[more]
KAA0031954.1	1.80e-36	78.41	zf-CCHC domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0056581.1	1.55e-27	62.50	reverse transcriptase [Cucumis melo var. makuwa] >TYK24263.1 reverse transcripta...	[more]
KAA0033032.1	1.75e-21	67.57	eIF-2-alpha kinase GCN2 isoform X5 [Cucumis melo var. makuwa] >TYK03447.1 eIF-2-...	[more]
TYK11204.1	2.31e-21	57.95	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011646 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011646.1	IVF0011646.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding