IVF0011618 (gene) Melon (IVF77) v1

Overview


Name	IVF0011618
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Kirola-like
Location	chr08: 26473409 .. 26474105 (-)
RNA-Seq Expression	IVF0011618
Synteny	IVF0011618

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCAAACAGAGGAGACAGGCACCAATTTTGGTTCCCCGCCTTCAGAAAACATCGGAAAATGTATCCTCGTCAATTTTTCCGTCGTCTGCCGCCAAAACCCTCTCGCGCACTGCCACGTGACTCCGTCGGACATCCACGCGCTAGTCCTATCTTCCTTAGAAAGTTTTGAACATTCCATCCGTGCAAACCTATTCTTCATCCGCAGTCTATATTGCTCCCCATGCCTCGATTCATGTTCTGCCACGTAATTCCGGTTGGCCACCATCGCTTCTGCTATCAAATCTGTATGCCCTACCAACCACTGATTTTAGCTATTATCCCAATACTAAGAATCTTCAAATTCACTCAACATTTGAGGTTGGTGAATCTTCGGCACATTTCAACCCTAACGTGCAAGCTTCCTCTTCAGGAATAACTCAACAGCAACTGGAAGGGCTTCGACAACATATTACAGCAATTGGGGCTACCCTAGGGACGACATCTAACACTTCTGTACCGATGTATTTTGAGAATGTGGTAACCTTGTTTCCTACTTTATCCTCTTCCTAGGTGAGTGAGAATGCTAGTCCAACCACACTTGGAGCTATTGTCCAACAGGTATACTTCAGTCCTTTAGTCTCATTAGTTTTAATGGTAAGAATCCTTGGATCTTGGACTCTGGTGCCACAGATCTTTTAACCGGTTCCTCTAA

mRNA sequence

ATGGAAATCAAACAGAGGAGACAGGCACCAATTTTGGTTCCCCGCCTTCAGAAAACATCGGAAAATGTATCCTCGTCAATTTTTCCGTCGTCTGCCGCCAAAACCCTCTCGCGCACTAAAGTTTTGAACATTCCATCCGTGCAAACCTATTCTTCATCCGCAGTCTATATTGCTCCCCATGCCTCGATTCATGTTCTGCCACGTAATTCCGGTTGGCCACCATCGCTTCTGCTATCAAATCTGTATGCCCTACCAACCACTGATTTTAGCTATTATCCCAATACTAAGAATCTTCAAATTCACTCAACATTTGAGGTTGGTGAATCTTCGGCACATTTCAACCCTAACGTGCAAGCTTCCTCTTCAGGAATAACTCAACAGCAACTGGAAGGGCTTCGACAACATATTACAGCAATTGGGGCTACCCTAGGGACGACATCTAACACTTCTGTACCGATGTATTTTGAGAATGTGGTAACCTTTGAGAATGCTAGTCCAACCACACTTGGAGCTATTGTCCAACAGGTATACTTCAAATCCTTGGATCTTGGACTCTGGTGCCACAGATCTTTTAACCGGTTCCTCTAA

Coding sequence (CDS)

ATGGAAATCAAACAGAGGAGACAGGCACCAATTTTGGTTCCCCGCCTTCAGAAAACATCGGAAAATGTATCCTCGTCAATTTTTCCGTCGTCTGCCGCCAAAACCCTCTCGCGCACTAAAGTTTTGAACATTCCATCCGTGCAAACCTATTCTTCATCCGCAGTCTATATTGCTCCCCATGCCTCGATTCATGTTCTGCCACGTAATTCCGGTTGGCCACCATCGCTTCTGCTATCAAATCTGTATGCCCTACCAACCACTGATTTTAGCTATTATCCCAATACTAAGAATCTTCAAATTCACTCAACATTTGAGGTTGGTGAATCTTCGGCACATTTCAACCCTAACGTGCAAGCTTCCTCTTCAGGAATAACTCAACAGCAACTGGAAGGGCTTCGACAACATATTACAGCAATTGGGGCTACCCTAGGGACGACATCTAACACTTCTGTACCGATGTATTTTGAGAATGTGGTAACCTTTGAGAATGCTAGTCCAACCACACTTGGAGCTATTGTCCAACAGGTATACTTCAAATCCTTGGATCTTGGACTCTGGTGCCACAGATCTTTTAACCGGTTCCTCTAA

Protein sequence

MEIKQRRQAPILVPRLQKTSENVSSSIFPSSAAKTLSRTKVLNIPSVQTYSSSAVYIAPHASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHSTFEVGESSAHFNPNVQASSSGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENVVTFENASPTTLGAIVQQVYFKSLDLGLWCHRSFNRFL

Homology

[Close]

BLAST of IVF0011618 vs. ExPASy TrEMBL
Match: A0A5D3DZV2 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00610 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.6e-50
Identity = 105/116 (90.52%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 43  NIPSVQTYSSSAVYIAPHASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHS 102
           N  S  + +    YIAPHASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHS
Sbjct: 27  NFGSPPSENIGKFYIAPHASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHS 86

Query: 103 TFEVGESSAHFNPNVQASSSGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENV 159
           TFEVGESSAHFNPNVQASSSGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENV
Sbjct: 87  TFEVGESSAHFNPNVQASSSGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENV 142

[Close]

BLAST of IVF0011618 vs. ExPASy TrEMBL
Match: A0A5D3CEE0 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004830 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 7.0e-38
Identity = 106/188 (56.38%), Postives = 116/188 (61.70%), Query Frame = 0


Query: 15  RLQKTSENVSSSIFPSSAAKTL---------SRTKVLNIPSVQTYSSSAVYIAPHASIHV 74
           RLQKT ++ S SI  SSA   +         S +   N P   T      YIAPHASI V
Sbjct: 7   RLQKTPKSASPSIMQSSAPTNMPHVPPRASPSSSDSFNHPICATLFFIRAYIAPHASIRV 66

Query: 75  LPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHSTFEVGESSAHFNPNVQASSSGIT 134
           LP N   PP LLLSNLY LP+++ SYYP+ KN QIHSTFEVG S A  NPNVQ SSSGIT
Sbjct: 67  LPPNFNHPPPLLLSNLYVLPSSNLSYYPDFKNPQIHSTFEVGGSLALSNPNVQTSSSGIT 126

Query: 135 QQQLEGLRQHITAIGATLGTTSNTSVPMYFENVVT----------FENASPTTLGAIVQQ 184
           QQQLE LRQ I AI ATLGTTS T  PMY EN+VT           ENASPTTLGA VQ 
Sbjct: 127 QQQLEELRQQIAAIEATLGTTSKTPRPMYIENLVTSFPTLSSFYVSENASPTTLGASVQS 186

[Close]

BLAST of IVF0011618 vs. ExPASy TrEMBL
Match: A0A5D3DL79 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001340 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 102/206 (49.51%), Postives = 123/206 (59.71%), Query Frame = 0


Query: 1   MEIKQRRQAPILVPRLQKTSENVSSSIFPSSAAKTLSRTKVLNIPSVQTYSSSAVYIAPH 60
           MEIKQRRQ P+L   +QK   +                   L +P + +Y + +V   P+
Sbjct: 1   MEIKQRRQLPVLAHPVQKLLTD-------------------LTVPPLSSYVACSV---PN 60

Query: 61  ASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHSTFEVGESSAHFNPNVQAS 120
             IHVLP NSG PP LL SNLYALP  D SY+P+ +N QIHS FEVGES  HFNPN+QAS
Sbjct: 61  VPIHVLPPNSGRPPLLLQSNLYALPPIDLSYHPDVRNPQIHSIFEVGESLTHFNPNMQAS 120

Query: 121 --SSGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENVVT----------FENASPTT 180
             SSGI+QQQL+GLRQ I AI +TLGTTS+T V MY +N +T           ENASPTT
Sbjct: 121 SFSSGISQQQLKGLRQQIAAIESTLGTTSDTPVSMYSQNPITSFPTLSSSYVSENASPTT 180

Query: 181 LGAIVQQ--------VYFKSLDLGLW 187
           L AIVQ         +     +LGLW
Sbjct: 181 LRAIVQSGIPQSFSLINIDGKNLGLW 184

[Close]

BLAST of IVF0011618 vs. ExPASy TrEMBL
Match: A0A5A7TDW1 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00630 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 102/206 (49.51%), Postives = 123/206 (59.71%), Query Frame = 0


Query: 1   MEIKQRRQAPILVPRLQKTSENVSSSIFPSSAAKTLSRTKVLNIPSVQTYSSSAVYIAPH 60
           MEIKQRRQ P+L   +QK   +                   L +P + +Y + +V   P+
Sbjct: 1   MEIKQRRQLPVLAHPVQKLLTD-------------------LTVPPLSSYVACSV---PN 60

Query: 61  ASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHSTFEVGESSAHFNPNVQAS 120
             IHVLP NSG PP LL SNLYALP  D SY+P+ +N QIHS FEVGES  HFNPN+QAS
Sbjct: 61  VPIHVLPPNSGRPPLLLQSNLYALPPIDLSYHPDVRNPQIHSIFEVGESLTHFNPNMQAS 120

Query: 121 --SSGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENVVT----------FENASPTT 180
             SSGI+QQQL+GLRQ I AI +TLGTTS+T V MY +N +T           ENASPTT
Sbjct: 121 SFSSGISQQQLKGLRQQIAAIESTLGTTSDTPVSMYSQNPITSFPTLSSSYVSENASPTT 180

Query: 181 LGAIVQQ--------VYFKSLDLGLW 187
           L AIVQ         +     +LGLW
Sbjct: 181 LRAIVQSGIPQSFSLINIDGKNLGLW 184

[Close]

BLAST of IVF0011618 vs. ExPASy TrEMBL
Match: A0A5A7U0S5 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00200 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 9.8e-32
Identity = 86/144 (59.72%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 23  VSSSIFPSSAAKTLSRTKVLNIPSVQTYSSSAVYIAPHASIHVLPRNSGWPPSLLLSNLY 82
           + +S+ P   A T         PSVQ +SSSA  IAPHA I VLP  SG  P LL SNLY
Sbjct: 26  IHASVLPPQTAST--------NPSVQPFSSSATNIAPHAPICVLPPKSGRQPPLLPSNLY 85

Query: 83  ALPTTDFSYYPNTKNLQIHSTFEVGESSAHFNPNVQASSSGITQQQLEGLRQHITAIGAT 142
           ALP  D S++PN KN +IHSTFE+GES AH NPNVQ  SSGI QQQLEGLR+ I A+ AT
Sbjct: 86  ALPPIDLSHHPNVKNTKIHSTFEIGESLAHSNPNVQV-SSGIAQQQLEGLRKQIAALEAT 145

Query: 143 LGTTSNTSVPMYFEN-VVTFENAS 166
           L TTSNTS+PMY EN V++F   S
Sbjct: 146 LRTTSNTSIPMYSENPVISFPTLS 160

[Close]

BLAST of IVF0011618 vs. NCBI nr
Match: KAA0065525.1 (kirola-like [Cucumis melo var. makuwa] >TYK29293.1 kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (537), Expect = 3.71e-65
Identity = 105/116 (90.52%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 43  NIPSVQTYSSSAVYIAPHASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHS 102
           N  S  + +    YIAPHASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHS
Sbjct: 27  NFGSPPSENIGKFYIAPHASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHS 86

Query: 103 TFEVGESSAHFNPNVQASSSGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENV 158
           TFEVGESSAHFNPNVQASSSGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENV
Sbjct: 87  TFEVGESSAHFNPNVQASSSGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENV 142

[Close]

BLAST of IVF0011618 vs. NCBI nr
Match: KAA0050981.1 (kirola-like [Cucumis melo var. makuwa] >TYK10327.1 kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 7.00e-49
Identity = 106/188 (56.38%), Postives = 116/188 (61.70%), Query Frame = 0


Query: 15  RLQKTSENVSSSIFPSSAAKTL---------SRTKVLNIPSVQTYSSSAVYIAPHASIHV 74
           RLQKT ++ S SI  SSA   +         S +   N P   T      YIAPHASI V
Sbjct: 7   RLQKTPKSASPSIMQSSAPTNMPHVPPRASPSSSDSFNHPICATLFFIRAYIAPHASIRV 66

Query: 75  LPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHSTFEVGESSAHFNPNVQASSSGIT 134
           LP N   PP LLLSNLY LP+++ SYYP+ KN QIHSTFEVG S A  NPNVQ SSSGIT
Sbjct: 67  LPPNFNHPPPLLLSNLYVLPSSNLSYYPDFKNPQIHSTFEVGGSLALSNPNVQTSSSGIT 126

Query: 135 QQQLEGLRQHITAIGATLGTTSNTSVPMYFENVVTF----------ENASPTTLGAIVQQ 183
           QQQLE LRQ I AI ATLGTTS T  PMY EN+VT           ENASPTTLGA VQ 
Sbjct: 127 QQQLEELRQQIAAIEATLGTTSKTPRPMYIENLVTSFPTLSSFYVSENASPTTLGASVQS 186

[Close]

BLAST of IVF0011618 vs. NCBI nr
Match: KAA0041480.1 (kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (410), Expect = 1.07e-45
Identity = 102/210 (48.57%), Postives = 125/210 (59.52%), Query Frame = 0


Query: 1   MEIKQRRQAPILVPRLQKTSENVSSSIFPSSAAKTLSRTKVLNIPSVQTYSSSAVYIAPH 60
           MEIKQRRQ P+L   +QK   +                   L +P + +Y + +V   P+
Sbjct: 1   MEIKQRRQLPVLAHPVQKLLTD-------------------LTVPPLSSYVACSV---PN 60

Query: 61  ASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHSTFEVGESSAHFNPNVQAS 120
             IHVLP NSG PP LL SNLYALP  D SY+P+ +N QIHS FEVGES  HFNPN+QAS
Sbjct: 61  VPIHVLPPNSGRPPLLLQSNLYALPPIDLSYHPDVRNPQIHSIFEVGESLTHFNPNMQAS 120

Query: 121 S--SGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENVVTF----------ENASPTT 180
           S  SGI+QQQL+GLRQ I AI +TLGTTS+T V MY +N +T           ENASPTT
Sbjct: 121 SFSSGISQQQLKGLRQQIAAIESTLGTTSDTPVSMYSQNPITSFPTLSSSYVSENASPTT 180

Query: 181 LGAIVQQ--------VYFKSLDLGLWCHRS 190
           L AIVQ         +     +LGLW ++ 
Sbjct: 181 LRAIVQSGIPQSFSLINIDGKNLGLWRNKK 188

[Close]

BLAST of IVF0011618 vs. NCBI nr
Match: TYK24354.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (410), Expect = 1.16e-43
Identity = 102/210 (48.57%), Postives = 125/210 (59.52%), Query Frame = 0


Query: 1   MEIKQRRQAPILVPRLQKTSENVSSSIFPSSAAKTLSRTKVLNIPSVQTYSSSAVYIAPH 60
           MEIKQRRQ P+L   +QK   +                   L +P + +Y + +V   P+
Sbjct: 1   MEIKQRRQLPVLAHPVQKLLTD-------------------LTVPPLSSYVACSV---PN 60

Query: 61  ASIHVLPRNSGWPPSLLLSNLYALPTTDFSYYPNTKNLQIHSTFEVGESSAHFNPNVQAS 120
             IHVLP NSG PP LL SNLYALP  D SY+P+ +N QIHS FEVGES  HFNPN+QAS
Sbjct: 61  VPIHVLPPNSGRPPLLLQSNLYALPPIDLSYHPDVRNPQIHSIFEVGESLTHFNPNMQAS 120

Query: 121 S--SGITQQQLEGLRQHITAIGATLGTTSNTSVPMYFENVVTF----------ENASPTT 180
           S  SGI+QQQL+GLRQ I AI +TLGTTS+T V MY +N +T           ENASPTT
Sbjct: 121 SFSSGISQQQLKGLRQQIAAIESTLGTTSDTPVSMYSQNPITSFPTLSSSYVSENASPTT 180

Query: 181 LGAIVQQ--------VYFKSLDLGLWCHRS 190
           L AIVQ         +     +LGLW ++ 
Sbjct: 181 LRAIVQSGIPQSFSLINIDGKNLGLWRNKK 188

[Close]

BLAST of IVF0011618 vs. NCBI nr
Match: KAA0048808.1 (kirola-like [Cucumis melo var. makuwa] >TYK20760.1 kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 2.72e-41
Identity = 86/144 (59.72%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 23  VSSSIFPSSAAKTLSRTKVLNIPSVQTYSSSAVYIAPHASIHVLPRNSGWPPSLLLSNLY 82
           + +S+ P   A T         PSVQ +SSSA  IAPHA I VLP  SG  P LL SNLY
Sbjct: 26  IHASVLPPQTASTN--------PSVQPFSSSATNIAPHAPICVLPPKSGRQPPLLPSNLY 85

Query: 83  ALPTTDFSYYPNTKNLQIHSTFEVGESSAHFNPNVQASSSGITQQQLEGLRQHITAIGAT 142
           ALP  D S++PN KN +IHSTFE+GES AH NPNVQ SS GI QQQLEGLR+ I A+ AT
Sbjct: 86  ALPPIDLSHHPNVKNTKIHSTFEIGESLAHSNPNVQVSS-GIAQQQLEGLRKQIAALEAT 145

Query: 143 LGTTSNTSVPMYFEN-VVTFENAS 165
           L TTSNTS+PMY EN V++F   S
Sbjct: 146 LRTTSNTSIPMYSENPVISFPTLS 160

The following BLAST results are available for this feature:

BLAST of IVF0011618 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011618 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZV2	1.6e-50	90.52	Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00610 P...	[more]
A0A5D3CEE0	7.0e-38	56.38	Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004830 PE...	[more]
A0A5D3DL79	1.9e-35	49.51	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TDW1	1.9e-35	49.51	Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00630 PE=4...	[more]
A0A5A7U0S5	9.8e-32	59.72	Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00200 PE...	[more]

BLAST of IVF0011618 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065525.1	3.71e-65	90.52	kirola-like [Cucumis melo var. makuwa] >TYK29293.1 kirola-like [Cucumis melo var...	[more]
KAA0050981.1	7.00e-49	56.38	kirola-like [Cucumis melo var. makuwa] >TYK10327.1 kirola-like [Cucumis melo var...	[more]
KAA0041480.1	1.07e-45	48.57	kirola-like [Cucumis melo var. makuwa]	[more]
TYK24354.1	1.16e-43	48.57	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0048808.1	2.72e-41	59.72	kirola-like [Cucumis melo var. makuwa] >TYK20760.1 kirola-like [Cucumis melo var...	[more]

BLAST of IVF0011618 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011618.2	IVF0011618.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane