IVF0011602 (gene) Melon (IVF77) v1

Overview


Name	IVF0011602
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CHD3-type chromatin-remodeling factor PICKLE
Location	chr10: 6049681 .. 6050306 (-)
RNA-Seq Expression	IVF0011602
Synteny	IVF0011602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCGAGCAACAATCCTGAGGAAGATTATGTTGCCATTCGACCTGAATGGATCGCGGGCGACAGTGGACCGGATTCTTGCTTGCAGATTTATTATTTTCTTGGAGTTCTTTGCATAGGTTCCTTTTTTGGAATAATCTTTTGACCTTTAAGTAAAGAAAATATTTTTCTAATTCCCTGCAGGAAAAACCATACAGAGTATTGCCTTTTTAGTATCCCTTTATGAATAGAATCTAGCTCCCCACTTGGTAGTTGCTCCACTTTCAACTCTTTGAAATTGGGAACGTGAATTTGCTGCCTGGGCTCCTCATATGAATGTTATATGTATCTGTTGGTTATTAATTCCTCGTAATGTTTGTTGGGTTGCATTATGCTAATATGCACTTGCTGCAGGTTATGTACGTGGGCACTGTACAAGCCCGTACGGTTATAAGGGAATATGAATTTTACTTTCCAAAGAATCATAAGAAGGTGAAGAAAAAGAAATCTGGCCAAATTGTTAGTGAAAGTAAGCAAGATAGAATCAAGTTTGATGTTCTGCTAACATCATATGAGATGATTAACTTTGATGTAGGAACACTGAAGCCTATAAAATGGCAATCTCTGGTGAGAGTCTGCCATTAG

mRNA sequence

ATGTCATCGAGCAACAATCCTGAGGAAGATTATGTTGCCATTCGACCTGAATGGATCGCGGGCGACAGTGGACCGGATTCTTGCTTGCAGATTTATTATTTTCTTGGAGTTATGTACGTGGGCACTGTACAAGCCCGTACGGTTATAAGGGAATATGAATTTTACTTTCCAAAGAATCATAAGAAGGTGAAGAAAAAGAAATCTGGCCAAATTGTTAGTGAAAGTAAGCAAGATAGAATCAAGTTTGATGTTCTGCTAACATCATATGAGATGATTAACTTTGATGTAGGAACACTGAAGCCTATAAAATGGCAATCTCTGGTGAGAGTCTGCCATTAG

Coding sequence (CDS)

ATGTCATCGAGCAACAATCCTGAGGAAGATTATGTTGCCATTCGACCTGAATGGATCGCGGGCGACAGTGGACCGGATTCTTGCTTGCAGATTTATTATTTTCTTGGAGTTATGTACGTGGGCACTGTACAAGCCCGTACGGTTATAAGGGAATATGAATTTTACTTTCCAAAGAATCATAAGAAGGTGAAGAAAAAGAAATCTGGCCAAATTGTTAGTGAAAGTAAGCAAGATAGAATCAAGTTTGATGTTCTGCTAACATCATATGAGATGATTAACTTTGATGTAGGAACACTGAAGCCTATAAAATGGCAATCTCTGGTGAGAGTCTGCCATTAG

Protein sequence

MSSSNNPEEDYVAIRPEWIAGDSGPDSCLQIYYFLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDVGTLKPIKWQSLVRVCH

Homology

[Close]

BLAST of IVF0011602 vs. ExPASy Swiss-Prot
Match: Q9S775 (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana OX=3702 GN=PKL PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-23
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMY GT QAR VIRE+EFY  K+ KK+KKKKSGQI SESKQ RIKFDVLLTSYEMIN D 
Sbjct: 349 VMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDS 408

Query: 97  GTLKPIKWQSLV 109
             LKPIKW+ ++
Sbjct: 409 AVLKPIKWECMI 420

[Close]

BLAST of IVF0011602 vs. ExPASy Swiss-Prot
Match: F4JTF6 (CHD3-type chromatin-remodeling factor CHR7 OS=Arabidopsis thaliana OX=3702 GN=CHR7 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMY G  +AR VI E+EFYF +  K                   KFDVLLT+YEM++  +
Sbjct: 301 VMYTGDSEARDVIWEHEFYFSEGRKS------------------KFDVLLTTYEMVHPGI 354

Query: 97  GTLKPIKWQSLV 109
             L PIKW  ++
Sbjct: 361 SVLSPIKWTCMI 354

[Close]

BLAST of IVF0011602 vs. ExPASy Swiss-Prot
Match: Q8TDI0 (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens OX=9606 GN=CHD5 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 33/75 (44.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 34  FLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMIN 93
           F  V Y G  ++R+VIRE EF F  N  +  KK    +    K+ +IKF VLLTSYE+I 
Sbjct: 775 FYVVTYTGDKESRSVIRENEFSFEDNAIRSGKK----VFRMKKEVQIKFHVLLTSYELIT 834

Query: 94  FDVGTLKPIKWQSLV 109
            D   L  I+W  LV
Sbjct: 835 IDQAILGSIEWACLV 845

[Close]

BLAST of IVF0011602 vs. ExPASy Swiss-Prot
Match: A2A8L1 (Chromodomain-helicase-DNA-binding protein 5 OS=Mus musculus OX=10090 GN=Chd5 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 33/75 (44.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 34  FLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMIN 93
           F  V Y G  ++R+VIRE EF F  N  +  KK    +    K+ +IKF VLLTSYE+I 
Sbjct: 777 FYVVTYTGDKESRSVIRENEFSFEDNAIRGGKK----VFRMKKEVQIKFHVLLTSYELIT 836

Query: 94  FDVGTLKPIKWQSLV 109
            D   L  I+W  LV
Sbjct: 837 IDQAILGSIEWACLV 847

[Close]

BLAST of IVF0011602 vs. ExPASy Swiss-Prot
Match: D3ZD32 (Chromodomain-helicase-DNA-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Chd5 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.3e-06
Identity = 33/75 (44.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 34  FLGVMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMIN 93
           F  V Y G  ++R+VIRE EF F  N  +  KK    +    K+ +IKF VLLTSYE+I 
Sbjct: 773 FYVVTYTGDKESRSVIRENEFSFEDNAIRGGKK----VFRMKKEVQIKFHVLLTSYELIT 832

Query: 94  FDVGTLKPIKWQSLV 109
            D   L  I+W  LV
Sbjct: 833 IDQAILGSIEWACLV 843

[Close]

BLAST of IVF0011602 vs. ExPASy TrEMBL
Match: A0A5A7VBI4 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.2e-31
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV
Sbjct: 378 VMYVGTAQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 437

Query: 97  GTLKPIKWQSLV 109
           GTLKPIKWQSL+
Sbjct: 438 GTLKPIKWQSLI 449

[Close]

BLAST of IVF0011602 vs. ExPASy TrEMBL
Match: A0A0A0L332 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652080 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.2e-31
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV
Sbjct: 362 VMYVGTAQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 421

Query: 97  GTLKPIKWQSLV 109
           GTLKPIKWQSL+
Sbjct: 422 GTLKPIKWQSLI 433

[Close]

BLAST of IVF0011602 vs. ExPASy TrEMBL
Match: A0A1S4DZ79 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo OX=3656 GN=LOC103493764 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.2e-31
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV
Sbjct: 362 VMYVGTAQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 421

Query: 97  GTLKPIKWQSLV 109
           GTLKPIKWQSL+
Sbjct: 422 GTLKPIKWQSLI 433

[Close]

BLAST of IVF0011602 vs. ExPASy TrEMBL
Match: A0A6J1C6Q2 (CHD3-type chromatin-remodeling factor PICKLE OS=Momordica charantia OX=3673 GN=LOC111008749 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.9e-27
Identity = 65/72 (90.28%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVG+ QAR VIREYEFYFPKNHKKVKKKKSGQIV ESKQDRIKFDVLLTSYEMINFDV
Sbjct: 361 VMYVGSAQARAVIREYEFYFPKNHKKVKKKKSGQIVGESKQDRIKFDVLLTSYEMINFDV 420

Query: 97  GTLKPIKWQSLV 109
            TLK IKWQSL+
Sbjct: 421 VTLKSIKWQSLI 432

[Close]

BLAST of IVF0011602 vs. ExPASy TrEMBL
Match: A0A6J1IVQ1 (CHD3-type chromatin-remodeling factor PICKLE OS=Cucurbita maxima OX=3661 GN=LOC111480376 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.2e-27
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVG+ QAR VIREYEF+FPKNHKKVKKKKSG I++ESKQDRIKFDVLLTSYEMINFDV
Sbjct: 360 VMYVGSAQARAVIREYEFFFPKNHKKVKKKKSGLIITESKQDRIKFDVLLTSYEMINFDV 419

Query: 97  GTLKPIKWQSLV 109
            TLKPI+WQSL+
Sbjct: 420 ATLKPIRWQSLI 431

[Close]

BLAST of IVF0011602 vs. NCBI nr
Match: XP_031739900.1 (CHD3-type chromatin-remodeling factor PICKLE [Cucumis sativus] >KGN55444.1 hypothetical protein Csa_012103 [Cucumis sativus])

HSP 1 Score: 142 bits (358), Expect = 1.42e-36
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV
Sbjct: 362 VMYVGTAQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 421

Query: 97  GTLKPIKWQSLV 108
           GTLKPIKWQSL+
Sbjct: 422 GTLKPIKWQSLI 433

[Close]

BLAST of IVF0011602 vs. NCBI nr
Match: XP_016901296.1 (PREDICTED: CHD3-type chromatin-remodeling factor PICKLE [Cucumis melo])

HSP 1 Score: 142 bits (358), Expect = 1.42e-36
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV
Sbjct: 362 VMYVGTAQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 421

Query: 97  GTLKPIKWQSLV 108
           GTLKPIKWQSL+
Sbjct: 422 GTLKPIKWQSLI 433

[Close]

BLAST of IVF0011602 vs. NCBI nr
Match: KAA0064594.1 (CHD3-type chromatin-remodeling factor PICKLE [Cucumis melo var. makuwa] >TYK19995.1 CHD3-type chromatin-remodeling factor PICKLE [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 1.42e-36
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVGT QARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV
Sbjct: 378 VMYVGTAQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 437

Query: 97  GTLKPIKWQSLV 108
           GTLKPIKWQSL+
Sbjct: 438 GTLKPIKWQSLI 449

[Close]

BLAST of IVF0011602 vs. NCBI nr
Match: XP_038897755.1 (CHD3-type chromatin-remodeling factor PICKLE isoform X2 [Benincasa hispida])

HSP 1 Score: 135 bits (339), Expect = 5.13e-34
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVGT QAR VIREYEFYFP+NHKKVKKKKSGQIV+ESKQDRIKFDVLLTSYEMINFDV
Sbjct: 362 VMYVGTAQARAVIREYEFYFPRNHKKVKKKKSGQIVTESKQDRIKFDVLLTSYEMINFDV 421

Query: 97  GTLKPIKWQSLV 108
           G LKPIKW+SL+
Sbjct: 422 GVLKPIKWESLI 433

[Close]

BLAST of IVF0011602 vs. NCBI nr
Match: XP_038897754.1 (CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Benincasa hispida])

HSP 1 Score: 135 bits (339), Expect = 5.16e-34
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMYVGT QAR VIREYEFYFP+NHKKVKKKKSGQIV+ESKQDRIKFDVLLTSYEMINFDV
Sbjct: 362 VMYVGTAQARAVIREYEFYFPRNHKKVKKKKSGQIVTESKQDRIKFDVLLTSYEMINFDV 421

Query: 97  GTLKPIKWQSLV 108
           G LKPIKW+SL+
Sbjct: 422 GVLKPIKWESLI 433

[Close]

BLAST of IVF0011602 vs. TAIR 10
Match: AT2G25170.1 (chromatin remodeling factor CHD3 (PICKLE) )

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-24
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMY GT QAR VIRE+EFY  K+ KK+KKKKSGQI SESKQ RIKFDVLLTSYEMIN D 
Sbjct: 349 VMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDS 408

Query: 97  GTLKPIKWQSLV 109
             LKPIKW+ ++
Sbjct: 409 AVLKPIKWECMI 420

[Close]

BLAST of IVF0011602 vs. TAIR 10
Match: AT4G31900.1 (chromatin remodeling factor, putative )

HSP 1 Score: 54.3 bits (129), Expect = 7.3e-08
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMY G  +AR VI E+EFYF +  K                   KFDVLLT+YEM++  +
Sbjct: 301 VMYTGDSEARDVIWEHEFYFSEGRKS------------------KFDVLLTTYEMVHPGI 354

Query: 97  GTLKPIKWQSLV 109
             L PIKW  ++
Sbjct: 361 SVLSPIKWTCMI 354

[Close]

BLAST of IVF0011602 vs. TAIR 10
Match: AT4G31900.2 (chromatin remodeling factor, putative )

HSP 1 Score: 54.3 bits (129), Expect = 7.3e-08
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           VMY G  +AR VI E+EFYF +  K                   KFDVLLT+YEM++  +
Sbjct: 260 VMYTGDSEARDVIWEHEFYFSEGRKS------------------KFDVLLTTYEMVHPGI 313

Query: 97  GTLKPIKWQSLV 109
             L PIKW  ++
Sbjct: 320 SVLSPIKWTCMI 313

[Close]

BLAST of IVF0011602 vs. TAIR 10
Match: AT2G13370.1 (chromatin remodeling 5 )

HSP 1 Score: 44.3 bits (103), Expect = 7.6e-05
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           ++YVGT  +R V ++YEFY   N KKV +              IKF+ LLT+YE++  D 
Sbjct: 703 IVYVGTRASREVCQQYEFY---NEKKVGRP-------------IKFNALLTTYEVVLKDK 754

Query: 97  GTLKPIKW 105
             L  IKW
Sbjct: 763 AVLSKIKW 754

[Close]

BLAST of IVF0011602 vs. TAIR 10
Match: AT5G44800.1 (chromatin remodeling 4 )

HSP 1 Score: 42.7 bits (99), Expect = 2.2e-04
Identity = 25/72 (34.72%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 37  VMYVGTVQARTVIREYEFYFPKNHKKVKKKKSGQIVSESKQDRIKFDVLLTSYEMINFDV 96
           V Y G+ + R +IR+YE++   +    KK  S            KF+VLLT+YEM+  D 
Sbjct: 767 VEYHGSAKGRAIIRDYEWHAKNSTGTTKKPTS-----------YKFNVLLTTYEMVLADS 826

Query: 97  GTLKPIKWQSLV 109
             L+ + W+ LV
Sbjct: 827 SHLRGVPWEVLV 827

The following BLAST results are available for this feature:

BLAST of IVF0011602 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S775	3.5e-23	73.61	CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4JTF6	1.0e-06	40.28	CHD3-type chromatin-remodeling factor CHR7 OS=Arabidopsis thaliana OX=3702 GN=CH...	[more]
Q8TDI0	1.8e-06	44.00	Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens OX=9606 GN=CHD5 PE=1...	[more]
A2A8L1	2.3e-06	44.00	Chromodomain-helicase-DNA-binding protein 5 OS=Mus musculus OX=10090 GN=Chd5 PE=...	[more]
D3ZD32	2.3e-06	44.00	Chromodomain-helicase-DNA-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Chd...	[more]

BLAST of IVF0011602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBI4	6.2e-31	97.22	CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0L332	6.2e-31	97.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652080 PE=4 SV=1	[more]
A0A1S4DZ79	6.2e-31	97.22	CHD3-type chromatin-remodeling factor PICKLE OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1C6Q2	1.9e-27	90.28	CHD3-type chromatin-remodeling factor PICKLE OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1IVQ1	4.2e-27	86.11	CHD3-type chromatin-remodeling factor PICKLE OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of IVF0011602 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739900.1	1.42e-36	97.22	CHD3-type chromatin-remodeling factor PICKLE [Cucumis sativus] >KGN55444.1 hypot...	[more]
XP_016901296.1	1.42e-36	97.22	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE [Cucumis melo]	[more]
KAA0064594.1	1.42e-36	97.22	CHD3-type chromatin-remodeling factor PICKLE [Cucumis melo var. makuwa] >TYK1999...	[more]
XP_038897755.1	5.13e-34	90.28	CHD3-type chromatin-remodeling factor PICKLE isoform X2 [Benincasa hispida]	[more]
XP_038897754.1	5.16e-34	90.28	CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Benincasa hispida]	[more]

BLAST of IVF0011602 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25170.1	2.5e-24	73.61	chromatin remodeling factor CHD3 (PICKLE)	[more]
AT4G31900.1	7.3e-08	40.28	chromatin remodeling factor, putative	[more]
AT4G31900.2	7.3e-08	40.28	chromatin remodeling factor, putative	[more]
AT2G13370.1	7.6e-05	39.71	chromatin remodeling 5	[more]
AT5G44800.1	2.2e-04	34.72	chromatin remodeling 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 37..108 e-value: 1.4E-7 score: 32.4
None	No IPR available	PANTHER	PTHR45623:SF34	CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE	coord: 37..108
None	No IPR available	PANTHER	PTHR45623	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	coord: 37..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011602.1	IVF0011602.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005506	iron ion binding