IVF0011506 (gene) Melon (IVF77) v1

Overview


Name	IVF0011506
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr01: 16039470 .. 16039796 (-)
RNA-Seq Expression	IVF0011506
Synteny	IVF0011506

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGCCTCCGGGCCGGCAACGGCCACCGAACCAGCGGCAGCCACCGCAAAACGGTCAAAACGATAGTCCACAGAGACTACCTCAATCAGTAGCTTCCTCCTCAGAAACTACTCTTTCTAGGAAAAAAATCCCCAGCTCAATCATCTGCACCAACACCTATGAGTGCAGAAAACTACGCCATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTAACTATTCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAA

mRNA sequence

ATGGAACCGCCTCCGGGCCGGCAACGGCCACCGAACCAGCGGCAGCCACCGCAAAACGGTCAAAACGATAGTCCACAGAGACTACCTCAATCAGTAGCTTCCTCCTCAGAAACTACTCTTTCTAGGAAAAAAATCCCCAGCTCAATCATCTGCACCAACACCTATGATATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTAACTATTCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAA

Coding sequence (CDS)

ATGGAACCGCCTCCGGGCCGGCAACGGCCACCGAACCAGCGGCAGCCACCGCAAAACGGTCAAAACGATAGTCCACAGAGACTACCTCAATCAGTAGCTTCCTCCTCAGAAACTACTCTTTCTAGGAAAAAAATCCCCAGCTCAATCATCTGCACCAACACCTATGATATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTAACTATTCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAA

Protein sequence

MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKKIPSSIICTNTYDIQATSRFCSKNINYSIRLFESSPYSFNRIVASLWTNNSK

Homology

[Close]

BLAST of IVF0011506 vs. ExPASy TrEMBL
Match: A0A5A7TBK1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00520 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKKIPS 48
          MEPPPGRQRP NQRQP QN QN +PQR PQSVA+SS TT SRKK P+
Sbjct: 1  MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPA 47

[Close]

BLAST of IVF0011506 vs. ExPASy TrEMBL
Match: A0A5D3D2Q6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00560 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKKIPS 48
          MEPPPGRQRP NQRQP QN QN +PQR PQSVA+SS TT SRKK P+
Sbjct: 1  MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPA 47

[Close]

BLAST of IVF0011506 vs. ExPASy TrEMBL
Match: A0A5A7SQU5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001670 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.7e-06
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKKIPS 48
          MEPPP RQRPPN+RQPP N QN+S  + PQSVASSS TT SRK+ PS
Sbjct: 1  MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPS 47

[Close]

BLAST of IVF0011506 vs. ExPASy TrEMBL
Match: A0A5D3DX32 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003460 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.7e-06
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKKIPS 48
          MEPPP RQRPPN+RQPP N QN+S  + PQSVASSS TT SRK+ PS
Sbjct: 1  MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPS 47

[Close]

BLAST of IVF0011506 vs. ExPASy TrEMBL
Match: A0A5A7U7T9 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKK 45
          MEPPPGRQR PNQRQ PQ+ QN+SPQR PQ+VASSSETT SR K
Sbjct: 1  MEPPPGRQRSPNQRQSPQSNQNNSPQR-PQTVASSSETTPSRGK 43

[Close]

BLAST of IVF0011506 vs. NCBI nr
Match: KAA0040832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.14e-08
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKKIP 46
          MEPPPGRQRP NQRQP QN QN +PQR PQSVA+SS TT SRKK P
Sbjct: 1  MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSP 46

[Close]

BLAST of IVF0011506 vs. NCBI nr
Match: TYK17808.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 1.14e-08
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKKIP 46
          MEPPPGRQRP NQRQP QN QN +PQR PQSVA+SS TT SRKK P
Sbjct: 1  MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSP 46

[Close]

BLAST of IVF0011506 vs. NCBI nr
Match: TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.01e-07
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKKIPS 47
          MEPPP RQRPPN+RQPP N QN+S  + PQSVASSS TT SRK+ PS
Sbjct: 1  MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPS 47

[Close]

BLAST of IVF0011506 vs. NCBI nr
Match: KAA0032918.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.01e-07
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKKIPS 47
          MEPPP RQRPPN+RQPP N QN+S  + PQSVASSS TT SRK+ PS
Sbjct: 1  MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPS 47

[Close]

BLAST of IVF0011506 vs. NCBI nr
Match: KAA0050447.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 6.36e-07
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MEPPPGRQRPPNQRQPPQNGQNDSPQRLPQSVASSSETTLSRKK 44
          MEPPPGRQR PNQRQ PQ+ QN+SPQR PQ+VASSSETT SR K
Sbjct: 1  MEPPPGRQRSPNQRQSPQSNQNNSPQR-PQTVASSSETTPSRGK 43

The following BLAST results are available for this feature:

BLAST of IVF0011506 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011506 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBK1	1.2e-06	76.60	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D2Q6	1.2e-06	76.60	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SQU5	7.7e-06	72.34	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DX32	7.7e-06	72.34	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U7T9	5.0e-05	79.55	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE...	[more]

BLAST of IVF0011506 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040832.1	1.14e-08	78.26	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK17808.1	1.14e-08	78.26	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK28082.1	1.01e-07	72.34	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0032918.1	1.01e-07	72.34	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0050447.1	6.36e-07	79.55	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011506 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011506.1	IVF0011506.1	mRNA