IVF0011464 (gene) Melon (IVF77) v1

Overview


Name	IVF0011464
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr04: 21895653 .. 21896117 (+)
RNA-Seq Expression	IVF0011464
Synteny	IVF0011464

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTTGCAGCGAAGGAAATGGGTTCAGCTCAAGGACTTCCGGTGTTCATCCCAAGAACACGCAAGCGAGAATGCCCCAGACTCAGTTTTCTCGTCCTGCGATAAAAAGCGGTCCCAGACGGTTTCTTTCCTTCGCTTCGCATTCGTCATAAGTCTTTCGATCTTCACGACACGTACTCCCAAGACTTCAACCCACACTTCTGTTATGCTCCCTGACACGTTTTCCCAAGTTATAGGTCGGAAAGCGAGCTCATTGAATGGAGAACTAAAGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCAAACTCTCGTCCAGTTTAAGAAACCACCAAAAATGCACTTGCAATGAAGGAAACGGGCTGAGCTTTAGGACTTCTGGTGTTCGTCCCAAGAAAACACGAGCAAGAATGCCCCAGACTCAGTTTTCTCGTCCATGGGTAACATAG

mRNA sequence

ATGCACTTGCAGCGAAGGAAATGGGTTCAGCTCAAGGACTTCCGGTGTTCATCCCAAGAACACGCAAGCGAGAATGCCCCAGACTCAGTTTTCTCGTCCTGCGATAAAAAGCGGTCCCAGACGGTTTCTTTCCTTCGCTTCGCATTCGTCATAAGTCTTTCGATCTTCACGACACGTACTCCCAAGACTTCAACCCACACTTCTGTTATGCTCCCTGACACGTTTTCCCAAGTTATAGGTCGGAAAGCGAGCTCATTGAATGGAGAACTAAAGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCAAACTCTCGTCCAGTTTAAGAAACCACCAAAAATGCACTTGCAATGAAGGAAACGGGCTGAGCTTTAGGACTTCTGGTGTTCGTCCCAAGAAAACACGAGCAAGAATGCCCCAGACTCAGTTTTCTCGTCCATGGGTAACATAG

Coding sequence (CDS)

ATGCACTTGCAGCGAAGGAAATGGGTTCAGCTCAAGGACTTCCGGTGTTCATCCCAAGAACACGCAAGCGAGAATGCCCCAGACTCAGTTTTCTCGTCCTGCGATAAAAAGCGGTCCCAGACGGTTTCTTTCCTTCGCTTCGCATTCGTCATAAGTCTTTCGATCTTCACGACACGTACTCCCAAGACTTCAACCCACACTTCTGTTATGCTCCCTGACACGTTTTCCCAAGTTATAGGTCGGAAAGCGAGCTCATTGAATGGAGAACTAAAGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCAAACTCTCGTCCAGTTTAAGAAACCACCAAAAATGCACTTGCAATGAAGGAAACGGGCTGAGCTTTAGGACTTCTGGTGTTCGTCCCAAGAAAACACGAGCAAGAATGCCCCAGACTCAGTTTTCTCGTCCATGGGTAACATAG

Protein sequence

MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWVT

Homology

[Close]

BLAST of IVF0011464 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.7e-37
Identity = 94/153 (61.44%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 1   MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRT 60
           MHLQ+RK  +L+DF   SQE+ SENA + VFSS  KK S    F  F            T
Sbjct: 20  MHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPNGFFPLFRIGHKSFDLEDHT 79

Query: 61  PKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCT 120
            KTST T  MLPDTFSQ IG+KASSL GE +CDPK+SK WPMLPT  K SS ++NH KCT
Sbjct: 80  LKTSTITPCMLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKCT 139

Query: 121 CNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWV 154
           C E N LS RTS VRPKKTRARMP+TQFSRP V
Sbjct: 140 CREENRLSSRTSSVRPKKTRARMPRTQFSRPVV 172

[Close]

BLAST of IVF0011464 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.7e-35
Identity = 104/234 (44.44%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 3    LQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRS----------------------- 62
            LQR K  +LKDFRCSSQE+A+E APDS+FSS  KKRS                       
Sbjct: 1430 LQRSKRPELKDFRCSSQENANEIAPDSIFSSLSKKRSPDVFFSLLRREASSLEEELWCDL 1489

Query: 63   ------------------------------------------------------------ 122
                                                                        
Sbjct: 1490 KRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSRSGAK 1549

Query: 123  ---QTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKR 151
                TVS L F  VI+LSIF  RTP+TSTHT+ MLPD FS+ IG++ASSL GEL C+PKR
Sbjct: 1550 SDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEASSLEGELWCNPKR 1609

[Close]

BLAST of IVF0011464 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.8e-34
Identity = 86/124 (69.35%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 28  DSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLN 87
           DSVFSS  K  SQTVS L F  VISL IF   TP+TSTHT  MLPD FSQ IGR+ASSL 
Sbjct: 419 DSVFSSWSKTWSQTVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLE 478

Query: 88  GELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQ 147
           GEL+CDPK  KRWPML TSG+LSS +RN+ K TC+E N L  RTS V PKKT ARMPQTQ
Sbjct: 479 GELRCDPKWYKRWPMLQTSGELSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQ 538

Query: 148 FSRP 152
           F RP
Sbjct: 539 FPRP 542

[Close]

BLAST of IVF0011464 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.6e-31
Identity = 86/153 (56.21%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 1   MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRT 60
           M+LQRRK  +LKDF CSSQE+AS+NAPDS FSS  KKRS       + F   L I     
Sbjct: 20  MYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSP------YGFFHLLRI----- 79

Query: 61  PKTSTHTSVMLPDTFSQVIGRKA--SSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQK 120
                H S  L  ++ +   R +  S L GEL CD K SKRWP+LPTSG+ SS +RNH K
Sbjct: 80  ----GHKSFDLQGSYYEDFNRHSWHSXLEGELWCDQKGSKRWPILPTSGECSSGIRNHWK 139

Query: 121 CTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRP 152
             C+EGNGLS RTSG RPKKTRARMP  QFSRP
Sbjct: 140 GPCSEGNGLSSRTSGARPKKTRARMPLNQFSRP 157

[Close]

BLAST of IVF0011464 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 84/155 (54.19%), Postives = 93/155 (60.00%), Query Frame = 0


Query: 1   MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRT 60
           MHLQRRK V+L+DFRCSSQE+ SENAPDS FSS  KKRS                     
Sbjct: 184 MHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRS--------------------- 243

Query: 61  PKTSTHTSVMLPDTFSQV--IGRKASS--LNGELKCDPKRSKRWPMLPTSGKLSSSLRNH 120
                      PD F  +  IG K+ S  + G      K  +RWPMLPTSG+ SS +RN 
Sbjct: 244 -----------PDGFFPLLRIGHKSGSELVGGRTVVRSKTVQRWPMLPTSGERSSGVRNQ 303

Query: 121 QKCTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRP 152
            KCTC EGNGLS RTSG RPKKTRARMPQTQFSRP
Sbjct: 304 WKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRP 306

[Close]

BLAST of IVF0011464 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (417), Expect = 1.53e-46
Identity = 94/153 (61.44%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 1   MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRT 60
           MHLQ+RK  +L+DF   SQE+ SENA + VFSS  KK S    F  F            T
Sbjct: 20  MHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPNGFFPLFRIGHKSFDLEDHT 79

Query: 61  PKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCT 120
            KTST T  MLPDTFSQ IG+KASSL GE +CDPK+SK WPMLPT  K SS ++NH KCT
Sbjct: 80  LKTSTITPCMLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKCT 139

Query: 121 CNEGNGLSFRTSGVRPKKTRARMPQTQFSRPWV 153
           C E N LS RTS VRPKKTRARMP+TQFSRP V
Sbjct: 140 CREENRLSSRTSSVRPKKTRARMPRTQFSRPVV 172

[Close]

BLAST of IVF0011464 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 2.24e-41
Identity = 105/234 (44.87%), Postives = 120/234 (51.28%), Query Frame = 0


Query: 3    LQRRKWVQLKDFRCSSQEHASENAPDSVFSS--------------------------CDK 62
            LQR K  +LKDFRCSSQE+A+E APDS+FSS                          CD 
Sbjct: 1430 LQRSKRPELKDFRCSSQENANEIAPDSIFSSLSKKRSPDVFFSLLRREASSLEEELWCDL 1489

Query: 63   KRSQ-------------------------------------------------------- 122
            KRS+                                                        
Sbjct: 1490 KRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSRSGAK 1549

Query: 123  ----TVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLNGELKCDPKR 150
                TVS L F  VI+LSIF  RTP+TSTHT+ MLPD FS+ IG++ASSL GEL C+PKR
Sbjct: 1550 SDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEASSLEGELWCNPKR 1609

[Close]

BLAST of IVF0011464 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 9.86e-41
Identity = 86/124 (69.35%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 28  DSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRTPKTSTHTSVMLPDTFSQVIGRKASSLN 87
           DSVFSS  K  SQTVS L F  VISL IF   TP+TSTHT  MLPD FSQ IGR+ASSL 
Sbjct: 419 DSVFSSWSKTWSQTVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLE 478

Query: 88  GELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGLSFRTSGVRPKKTRARMPQTQ 147
           GEL+CDPK  KRWPML TSG+LSS +RN+ K TC+E N L  RTS V PKKT ARMPQTQ
Sbjct: 479 GELRCDPKWYKRWPMLQTSGELSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQ 538

Query: 148 FSRP 151
           F RP
Sbjct: 539 FPRP 542

[Close]

BLAST of IVF0011464 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 8.72e-37
Identity = 86/153 (56.21%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 1   MHLQRRKWVQLKDFRCSSQEHASENAPDSVFSSCDKKRSQTVSFLRFAFVISLSIFTTRT 60
           M+LQRRK  +LKDF CSSQE+AS+NAPDS FSS  KKRS       + F   L I     
Sbjct: 20  MYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSP------YGFFHLLRIG---- 79

Query: 61  PKTSTHTSVMLPDTFSQVIGRKA--SSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQK 120
                H S  L  ++ +   R +  S L GEL CD K SKRWP+LPTSG+ SS +RNH K
Sbjct: 80  -----HKSFDLQGSYYEDFNRHSWHSXLEGELWCDQKGSKRWPILPTSGECSSGIRNHWK 139

Query: 121 CTCNEGNGLSFRTSGVRPKKTRARMPQTQFSRP 151
             C+EGNGLS RTSG RPKKTRARMP  QFSRP
Sbjct: 140 GPCSEGNGLSSRTSGARPKKTRARMPLNQFSRP 157

[Close]

BLAST of IVF0011464 vs. NCBI nr
Match: KAA0026022.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 1.39e-36
Identity = 66/84 (78.57%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 70  MLPDTFSQVIGRKASSLNGELKCDPKRSKRWPMLPTSGKLSSSLRNHQKCTCNEGNGLSF 129
           MLPD FS  IGR+A+SL GEL CDPKRSKRWPMLPTSG+ SS  RNH KCTC+EGNGLS 
Sbjct: 1   MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSS 60

Query: 130 RTSGVRPKKTRARMPQTQFSRPWV 153
           RTSG RPKKTRA MP+TQFSRP V
Sbjct: 61  RTSGARPKKTRAGMPRTQFSRPGV 84

The following BLAST results are available for this feature:

BLAST of IVF0011464 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011464 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5W4	4.7e-37	61.44	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V5J2	5.7e-35	44.44	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3DIF8	2.8e-34	69.35	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]
A0A5A7UVV0	6.6e-31	56.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DFP2	2.1e-29	54.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0011464 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035524.1	1.53e-46	61.44	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
KAA0062888.1	2.24e-41	44.87	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYK23424.1	9.86e-41	69.35	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0057641.1	8.72e-37	56.21	hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]	[more]
KAA0026022.1	1.39e-36	78.57	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]

BLAST of IVF0011464 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011464.1	IVF0011464.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding