IVF0011462 (gene) Melon (IVF77) v1

Overview


Name	IVF0011462
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	histone H1
Location	chr08: 5846283 .. 5847436 (-)
RNA-Seq Expression	IVF0011462
Synteny	IVF0011462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCCTCAGATATTTTCTTTATTACATGTTGGCAATCCTTGTCCACTAGTACTGGCCAATCTCAGCTCGTATTTCCCTCCACATCCAGATTCTTCTTCCCCTATAACTGTCTCCGAGCAGACCTTCGTCTCGAGCATATTCGATAAGCGTTTGCGTCTTGAAAATTTTGATCATGACATCGACGGGAGAAGCTGCAGAAGTGAAAGTTCCGGCGGAGGATGTTGCTCCTGTGGAGGTTGTTCCGGCTACGGAGGAGCCGAAGGAGGTAGAGAAGCCGGTGAAGGAGAAGAAACCTAGAGCTCCGAGGGAGAAGAAGCCTAGACAGTCTAAAGTTGCTTCACATCCACCGTATTTTCAGGTAATTTTATTTGTTGATGGTTTGATTGTGTTGATTTTGATTGTATCGAGTGAGGATTCTGATGAATTGTAATATAATTGCAGATGATCAATGAAGCAATCTCGTCACTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCGAAATACATGGAGGAAAAACACAAGGCGGTTCTTCCAGCGAATTTCAGGAAAATATTGGCTCTTCAATTGAAGAATTCCACAGCTAAAGGAAAATTGACGAAGATCAAGGCATCGTATAAGCTCTCCGAAATAGGAAAGAAAAAAGATAAGAACGCAACGAAAGTCGCAAAAGCGAACGCCGAGAAGATAACAAAACAGGCGAGAACGACGAGAACTACTGGAAGGAAAAGGAAGGCGGTGAAGAAGGAGGAGGCGGTGAGTAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGGTCTACTCCGGCGAAGCCGAAACAGCCGAAATCAATTAAGTCTCCTGCAGCGAAGAGGGCTAAAAAGCGGTTGTGTGAAATGTAGAGCAGAGTTTAAACAAGTTTGTGTTTGAATCCTCTTCTGTGAATATCTTGGTTAAGAATTACGATCATGTAGTGTGTAGATCTATTTTAGTGTTTTTGCTTCATCTGCAATGAAAATAAATCCTTTCTTGTTATGAATTTCAATGTTCTTGATACGATACATTTTCAGGGATCTCCGATTTGCTGTTTGAATTAGAAATAAGAAGAATGAAATGGAAACCAATGAAATTACGTCCATTATTGGTCGTTTAATTTGTGTTTAGAACA

mRNA sequence

ACGCCTCAGATATTTTCTTTATTACATGTTGGCAATCCTTGTCCACTAGTACTGGCCAATCTCAGCTCGTATTTCCCTCCACATCCAGATTCTTCTTCCCCTATAACTGTCTCCGAGCAGACCTTCGTCTCGAGCATATTCGATAAGCGTTTGCGTCTTGAAAATTTTGATCATGACATCGACGGGAGAAGCTGCAGAAGTGAAAGTTCCGGCGGAGGATGTTGCTCCTGTGGAGGTTGTTCCGGCTACGGAGGAGCCGAAGGAGGTAGAGAAGCCGGTGAAGGAGAAGAAACCTAGAGCTCCGAGGGAGAAGAAGCCTAGACAGTCTAAAGTTGCTTCACATCCACCGTATTTTCAGATGATCAATGAAGCAATCTCGTCACTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCGAAATACATGGAGGAAAAACACAAGGCGGTTCTTCCAGCGAATTTCAGGAAAATATTGGCTCTTCAATTGAAGAATTCCACAGCTAAAGGAAAATTGACGAAGATCAAGGCATCGTATAAGCTCTCCGAAATAGGAAAGAAAAAAGATAAGAACGCAACGAAAGTCGCAAAAGCGAACGCCGAGAAGATAACAAAACAGGCGAGAACGACGAGAACTACTGGAAGGAAAAGGAAGGCGGTGAAGAAGGAGGAGGCGGTGAGTAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGGTCTACTCCGGCGAAGCCGAAACAGCCGAAATCAATTAAGTCTCCTGCAGCGAAGAGGGCTAAAAAGCGGTTGTGTGAAATGTAGAGCAGAGTTTAAACAAGTTTGTGTTTGAATCCTCTTCTGTGAATATCTTGGTTAAGAATTACGATCATGTAGTGTGTAGATCTATTTTAGTGTTTTTGCTTCATCTGCAATGAAAATAAATCCTTTCTTGTTATGAATTTCAATGTTCTTGATACGATACATTTTCAGGGATCTCCGATTTGCTGTTTGAATTAGAAATAAGAAGAATGAAATGGAAACCAATGAAATTACGTCCATTATTGGTCGTTTAATTTGTGTTTAGAACA

Coding sequence (CDS)

ATGACATCGACGGGAGAAGCTGCAGAAGTGAAAGTTCCGGCGGAGGATGTTGCTCCTGTGGAGGTTGTTCCGGCTACGGAGGAGCCGAAGGAGGTAGAGAAGCCGGTGAAGGAGAAGAAACCTAGAGCTCCGAGGGAGAAGAAGCCTAGACAGTCTAAAGTTGCTTCACATCCACCGTATTTTCAGATGATCAATGAAGCAATCTCGTCACTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCGAAATACATGGAGGAAAAACACAAGGCGGTTCTTCCAGCGAATTTCAGGAAAATATTGGCTCTTCAATTGAAGAATTCCACAGCTAAAGGAAAATTGACGAAGATCAAGGCATCGTATAAGCTCTCCGAAATAGGAAAGAAAAAAGATAAGAACGCAACGAAAGTCGCAAAAGCGAACGCCGAGAAGATAACAAAACAGGCGAGAACGACGAGAACTACTGGAAGGAAAAGGAAGGCGGTGAAGAAGGAGGAGGCGGTGAGTAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGGTCTACTCCGGCGAAGCCGAAACAGCCGAAATCAATTAAGTCTCCTGCAGCGAAGAGGGCTAAAAAGCGGTTGTGTGAAATGTAG

Protein sequence

MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKKPKRSTPAKPKQPKSIKSPAAKRAKKRLCEM

Homology

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BLAST of IVF0011462 vs. ExPASy Swiss-Prot
Match: P40267 (Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-44
Identity = 118/191 (61.78%), Postives = 140/191 (73.30%), Query Frame = 0


Query: 19  PVEVVPATEEPKEVEK-PVKEKKPRAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGS 78
           P  V   TE  K  E+ P  +KKPRAP+EKKP+ +K  +HPPYFQMI EA+ +LNEK GS
Sbjct: 10  PTVVQRPTEASKVKEQAPATDKKPRAPKEKKPKSAKAVTHPPYFQMIKEALLALNEKGGS 69

Query: 79  SPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSEIGKKKDKNAT- 138
           SPYA+AKYME+KHK  LPANFRKIL LQLKNS AKGKL KIKASYKLSE GKK+    T 
Sbjct: 70  SPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLSEAGKKETTTKTS 129

Query: 139 --KVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKKPKRSTPAKPKQPKS 198
             K+ KA+++K  +  R T T  +K +  KK +A  K  KKV AK+ ++STPAK KQPKS
Sbjct: 130 TKKLPKADSKKKPRSTRATATAAKKTEVPKKAKATPKP-KKVGAKRTRKSTPAKAKQPKS 189

Query: 199 IKSPAAKRAKK 206
           IKSPAAKRAKK
Sbjct: 190 IKSPAAKRAKK 199

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BLAST of IVF0011462 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-19
Identity = 87/183 (47.54%), Postives = 104/183 (56.83%), Query Frame = 0


Query: 23  VPATEEPK-EVEKPVKEKKPRAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYA 82
           VP  EEPK EVEK  K K  +  +  KPR    ASHP Y +MI +AI SL EKNGSS YA
Sbjct: 29  VPEKEEPKAEVEKTKKAKGSKPKKASKPRNP--ASHPTYEEMIKDAIVSLKEKNGSSQYA 88

Query: 83  IAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSEIGKKKDKNATKVAKA 142
           IAK++EEK K  LPANF+K+L   LK + A GKL K+K S+KLS   KK    A    KA
Sbjct: 89  IAKFIEEKQKQ-LPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKP---AVAKPKA 148

Query: 143 NAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKKPKRSTPAKPKQPKSIKSPAAK 202
                 K  +       K KAV K +  SKA  K VA KPK++  AKPK   +   P A 
Sbjct: 149 KTAAKAKSVKAKPAAKPKAKAVVKPKVASKA--KAVAAKPKKAA-AKPKTVAAKTKPTAA 202

Query: 203 RAK 205
           + K
Sbjct: 209 KPK 202

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BLAST of IVF0011462 vs. ExPASy Swiss-Prot
Match: P27806 (Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-18
Identity = 89/211 (42.18%), Postives = 120/211 (56.87%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPA-TEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPP 60
           M++   AA++ VP  +VA    V     +P +  K  K KK   P  KKPR +   +HP 
Sbjct: 1   MSTDVAAADIPVPQVEVAADAAVDTPAAKPAKAPKAAKAKK-STPGPKKPRVT--PAHPS 60

Query: 61  YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK 120
           Y +M++EAI++L E++GSS  AI K++E+KHKA LPANFRKIL  Q+K   A GKLTK+K
Sbjct: 61  YAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVK 120

Query: 121 ASYKLSEI-GKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVA 180
            SYKL++     K K ATK   A   K    A+ T      +KA  K +A + A  K VA
Sbjct: 121 GSYKLAKAPAAVKPKTATKKKPAAKPKAKAPAKKTAAKSPAKKAAAKPKAKAPAKAKAVA 180

Query: 181 KKPKRSTP---AKPK-QPKSIKSPAAKRAKK 206
           K    + P   AKPK +  + K+PAA   KK
Sbjct: 181 KPKAAAKPKAAAKPKAKAAAKKAPAAATPKK 208

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BLAST of IVF0011462 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-17
Identity = 88/202 (43.56%), Postives = 108/202 (53.47%), Query Frame = 0


Query: 6   EAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPYFQMIN 65
           +  E   P  D AP     A   P       K KK  AP+++        +H PY +M++
Sbjct: 4   DVTETPAPLVDAAPEAPADAPAAPAADANAAKAKKATAPKKRAS-----PTHLPYAEMVS 63

Query: 66  EAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLS 125
           EAI+SL E+ GSS YAIAK++E+KHKA LP NFRK+L +QLK   A GKLTK+K SYKLS
Sbjct: 64  EAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLS 123

Query: 126 EIGK--KKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKKPKR 185
              K   K K A K  K  A+K    A+    T  K K   K +  +K  K VV  KPK 
Sbjct: 124 SATKPNPKPKAAPKKPKTGAKKPKAAAKPKAKTPAKAKPATKPKPAAKP-KAVV--KPK- 183

Query: 186 STPAKPKQPKSIKSPAAKRAKK 206
            TPAKPK       PAAK   K
Sbjct: 184 -TPAKPK-----AKPAAKAKPK 190

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BLAST of IVF0011462 vs. ExPASy Swiss-Prot
Match: Q08864 (Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-15
Identity = 81/210 (38.57%), Postives = 117/210 (55.71%), Query Frame = 0


Query: 3   STGEAAEVKVPAEDVAPV-----EVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASH 62
           S  EAA V  PA + AP         P  + PK+ + P   K+P+AP+EKKP+ +   +H
Sbjct: 2   SETEAAPVVAPAAEAAPAAEAPKAKAPKAKAPKQPKAPKAPKEPKAPKEKKPKAA--PTH 61

Query: 63  PPYFQMINEAISSLNEKNGSSPYAIAKYMEEKH-KAVLPANFRKILALQLKNSTAKGKLT 122
           PPY +M+ +AI++L E+NGSS  A+ K++E K+ K +   NF K L+  +K     GKL 
Sbjct: 62  PPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLV 121

Query: 123 KIKASYKLSEIGKKKDKNAT-KVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKK 182
           K+K S+KLSE  K K K +T K AKA+ E     A+  ++  + +KA        +AVKK
Sbjct: 122 KVKGSFKLSEALKAKAKKSTPKKAKADGE-----AKPKKSEAKPKKA--------EAVKK 181

Query: 183 VVAKKPKRSTPAKPKQPKSIKSPAAKRAKK 206
             A K K   P K K+ K  K  A  +A+K
Sbjct: 182 TKAPKEKVERPKKEKKEKVEKKKATPKAEK 196

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BLAST of IVF0011462 vs. ExPASy TrEMBL
Match: A0A5A7SK97 (Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001460 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.5e-94
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60
           MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180
           SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK
Sbjct: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180

Query: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 206
           PKRSTPAKPKQPKSIKSPAAKRAKK
Sbjct: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 205

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BLAST of IVF0011462 vs. ExPASy TrEMBL
Match: A0A1S3B1Z2 (histone H1 OS=Cucumis melo OX=3656 GN=LOC103485111 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.5e-94
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60
           MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180
           SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK
Sbjct: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180

Query: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 206
           PKRSTPAKPKQPKSIKSPAAKRAKK
Sbjct: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 205

[Close]

BLAST of IVF0011462 vs. ExPASy TrEMBL
Match: A0A0A0KJB6 (Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.2e-88
Identity = 198/205 (96.59%), Postives = 199/205 (97.07%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60
           M+STGEAAEVKVPAEDVAPVE VPATEEPKEVEKPVKEKKPRA REKKPRQSKVASHPPY
Sbjct: 1   MSSTGEAAEVKVPAEDVAPVE-VPATEEPKEVEKPVKEKKPRATREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180
           SYKLSE GKKKD NATKVAKANAEK TKQARTTRTTGRKRKAVK EEAVSKAVKKVVAKK
Sbjct: 121 SYKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKAVKKVVAKK 180

Query: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 206
           PKRSTPAKPKQPKSIKSPAAKRAKK
Sbjct: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 204

[Close]

BLAST of IVF0011462 vs. ExPASy TrEMBL
Match: A0A6J1IMR2 (histone H1 OS=Cucurbita maxima OX=3661 GN=LOC111478808 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.8e-69
Identity = 171/208 (82.21%), Postives = 180/208 (86.54%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60
           M+STGE  EVKVPAED AP   VP+ EEPKE EKPV+EKK R PREKKPRQSKVASHPPY
Sbjct: 1   MSSTGE-TEVKVPAED-APSAEVPSAEEPKEAEKPVEEKKSRTPREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKA
Sbjct: 61  FQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKA 120

Query: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVS---KAVKKVV 180
           SY+LSE G KKDK A+KVAKANAEK TKQARTTR T  KR    K+EA S   KAVKKVV
Sbjct: 121 SYELSEAG-KKDKKASKVAKANAEKNTKQARTTRATAGKR----KDEAASKTAKAVKKVV 180

Query: 181 AKKPKRSTPAKPKQPKSIKSPAAKRAKK 206
           AKKPKR+TPAKPKQPKSI+SPAAKRAKK
Sbjct: 181 AKKPKRTTPAKPKQPKSIRSPAAKRAKK 201

[Close]

BLAST of IVF0011462 vs. ExPASy TrEMBL
Match: A0A6J1GFQ2 (histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111453744 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 7.0e-68
Identity = 168/205 (81.95%), Postives = 179/205 (87.32%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60
           M+STGE AEVKVPAED   VE VP+ EE KE EKPV+EKK R PREKKPRQSKVASHPPY
Sbjct: 1   MSSTGE-AEVKVPAEDAPSVE-VPSAEETKEAEKPVEEKKSRTPREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKA
Sbjct: 61  FQMIMEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKA 120

Query: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180
           SY+LSE G KKDK A+KVAKANAEK TKQARTTR T  KRK     +A +KA+KKVVAKK
Sbjct: 121 SYELSEAG-KKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKA-AKAMKKVVAKK 180

Query: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 206
           PKR+TPAKPKQPKSI+SPAAKRAKK
Sbjct: 181 PKRTTPAKPKQPKSIRSPAAKRAKK 201

[Close]

BLAST of IVF0011462 vs. NCBI nr
Match: XP_008440801.1 (PREDICTED: histone H1 [Cucumis melo] >KAA0025689.1 histone H1 [Cucumis melo var. makuwa] >TYK12564.1 histone H1 [Cucumis melo var. makuwa])

HSP 1 Score: 357 bits (917), Expect = 2.15e-123
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60
           MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180
           SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK
Sbjct: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180

Query: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 205
           PKRSTPAKPKQPKSIKSPAAKRAKK
Sbjct: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 205

[Close]

BLAST of IVF0011462 vs. NCBI nr
Match: XP_004134874.1 (histone H1 [Cucumis sativus])

HSP 1 Score: 337 bits (865), Expect = 1.74e-115
Identity = 198/205 (96.59%), Postives = 199/205 (97.07%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60
           M+STGEAAEVKVPAEDVAPVEV PATEEPKEVEKPVKEKKPRA REKKPRQSKVASHPPY
Sbjct: 1   MSSTGEAAEVKVPAEDVAPVEV-PATEEPKEVEKPVKEKKPRATREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180
           SYKLSE GKKKD NATKVAKANAEK TKQARTTRTTGRKRKAVK EEAVSKAVKKVVAKK
Sbjct: 121 SYKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKAVKKVVAKK 180

Query: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 205
           PKRSTPAKPKQPKSIKSPAAKRAKK
Sbjct: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 204

[Close]

BLAST of IVF0011462 vs. NCBI nr
Match: KAE8647604.1 (hypothetical protein Csa_003640 [Cucumis sativus])

HSP 1 Score: 317 bits (811), Expect = 2.06e-107
Identity = 188/205 (91.71%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60
           M+STGEAAEVK           VPATEEPKEVEKPVKEKKPRA REKKPRQSKVASHPPY
Sbjct: 1   MSSTGEAAEVK-----------VPATEEPKEVEKPVKEKKPRATREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180
           SYKLSE GKKKD NATKVAKANAEK TKQARTTRTTGRKRKAVK EEAVSKAVKKVVAKK
Sbjct: 121 SYKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKAVKKVVAKK 180

Query: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 205
           PKRSTPAKPKQPKSIKSPAAKRAKK
Sbjct: 181 PKRSTPAKPKQPKSIKSPAAKRAKK 194

[Close]

BLAST of IVF0011462 vs. NCBI nr
Match: XP_038883821.1 (histone H1 [Benincasa hispida])

HSP 1 Score: 313 bits (802), Expect = 7.60e-106
Identity = 190/209 (90.91%), Postives = 195/209 (93.30%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKP-VKEKKPRAPREKKPRQSKVASHPP 60
           M+S GEA EVKVPAEDV PV +VPA EEPKE EKP VKEKKPRAPREKKPRQSKVASHPP
Sbjct: 1   MSSIGEA-EVKVPAEDVPPV-MVPAAEEPKEAEKPPVKEKKPRAPREKKPRQSKVASHPP 60

Query: 61  YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIK 120
           YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKIL+LQLKNSTAKGKLTKIK
Sbjct: 61  YFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILSLQLKNSTAKGKLTKIK 120

Query: 121 ASYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKA---VKKV 180
           ASYKLSE GKKKDKNATKVAKANAEK TKQARTTRTTGRKRKAVKK+EA SKA   VKKV
Sbjct: 121 ASYKLSETGKKKDKNATKVAKANAEKKTKQARTTRTTGRKRKAVKKDEAASKAAKAVKKV 180

Query: 181 VAKKPKRSTPAKPKQPKSIKSPAAKRAKK 205
           VAKKPKRSTPAKPK PKSI+SPAAKRAKK
Sbjct: 181 VAKKPKRSTPAKPKPPKSIRSPAAKRAKK 207

[Close]

BLAST of IVF0011462 vs. NCBI nr
Match: XP_022979052.1 (histone H1 [Cucurbita maxima])

HSP 1 Score: 273 bits (698), Expect = 4.17e-90
Identity = 171/208 (82.21%), Postives = 180/208 (86.54%), Query Frame = 0


Query: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60
           M+STGE  EVKVPAED AP   VP+ EEPKE EKPV+EKK R PREKKPRQSKVASHPPY
Sbjct: 1   MSSTGET-EVKVPAED-APSAEVPSAEEPKEAEKPVEEKKSRTPREKKPRQSKVASHPPY 60

Query: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120
           FQMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKA
Sbjct: 61  FQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKA 120

Query: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSK---AVKKVV 180
           SY+LSE GKK DK A+KVAKANAEK TKQARTTR T  KRK    +EA SK   AVKKVV
Sbjct: 121 SYELSEAGKK-DKKASKVAKANAEKNTKQARTTRATAGKRK----DEAASKTAKAVKKVV 180

Query: 181 AKKPKRSTPAKPKQPKSIKSPAAKRAKK 205
           AKKPKR+TPAKPKQPKSI+SPAAKRAKK
Sbjct: 181 AKKPKRTTPAKPKQPKSIRSPAAKRAKK 201

[Close]

BLAST of IVF0011462 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-29
Identity = 83/165 (50.30%), Postives = 108/165 (65.45%), Query Frame = 0


Query: 42  RAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKI 101
           + P  KKPR+ K  +HPPYFQMI EA+  L EKNGSSPYAIAK +EEKHK++LP +FRK 
Sbjct: 9   KTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKT 68

Query: 102 LALQLKNSTAKGKLTKIKASYKLSE----IGKKKDKNATKVAKANAEKITKQARTTRTTG 161
           L+LQLKNS AKGKL KI+ASYKLS+    I +++DK   K  K   ++ITK+ R++ T  
Sbjct: 69  LSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRP 128

Query: 162 RKRKAVKKEEAVSKAVKKVVAKKPKRSTPAKPKQPKSIKSPAAKR 203
           +K  +V K+E              K+    K +QPKSIKS   K+
Sbjct: 129 KKTVSVNKQE--------------KKRKVKKARQPKSIKSSVGKK 159

[Close]

BLAST of IVF0011462 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-22
Identity = 71/144 (49.31%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 63  MINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASY 122
           MI EA+  L EKNGSSPYAIAK +EEKHK++LP +FRK L+LQLKNS AKGKL KI+ASY
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 123 KLSE----IGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVA 182
           KLS+    I +++DK   K  K   ++ITK+ R++ T  +K  +V K+E           
Sbjct: 61  KLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRPKKTVSVNKQE----------- 120

Query: 183 KKPKRSTPAKPKQPKSIKSPAAKR 203
              K+    K +QPKSIKS   K+
Sbjct: 121 ---KKRKVKKARQPKSIKSSVGKK 130

[Close]

BLAST of IVF0011462 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 80/197 (40.61%), Postives = 100/197 (50.76%), Query Frame = 0


Query: 12  VPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKK-----PRQSKVASHPPYFQMINE 71
           +     A   V  A  E K   K  K K  +  +EKK     P++  V+SHP Y +MI +
Sbjct: 12  IEGNTAADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKD 71

Query: 72  AISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSE 131
           AI +L E+ GSS YAI K++EEK K  LP  FRK+L L LK   A GKL K+KAS+KL  
Sbjct: 72  AIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLVKVKASFKLPS 131

Query: 132 IGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKKPKRSTP 191
              K         KA AEK +  A+    T    KA +K  A SKA KK +A KPK  T 
Sbjct: 132 ASAKASS-----PKAAAEK-SAPAKKKPATVAVTKAKRKVAAASKA-KKTIAVKPK--TA 191

Query: 192 AKPKQPKSIKSPAAKRA 204
           A  K     K+    RA
Sbjct: 192 AAKKVTAKAKAKPVPRA 198

[Close]

BLAST of IVF0011462 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 68.9 bits (167), Expect = 5.4e-12
Identity = 71/179 (39.66%), Postives = 94/179 (52.51%), Query Frame = 0


Query: 26  TEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYAIAKY 85
           T   K  +KPV   K  AP +KK      +SHP Y +MI +AI +L E+ GSS YAI K+
Sbjct: 38  TTTAKATKKPV---KAAAPTKKK----TTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKF 97

Query: 86  MEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSEI--------GKKKDKNATK 145
           +EEKHK+ LP  FRK+L + LK   A  KL K+KAS+K+                K AT 
Sbjct: 98  IEEKHKS-LPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKKATV 157

Query: 146 VAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKKPKRSTPAKPKQPKSIK 197
           VAK  A + +    T  + G+K  A  K+ AV+   KK  AK  K  +PAK    +  K
Sbjct: 158 VAKPKASRTS----TRTSPGKKVAAPAKKVAVT---KKAPAKSVKVKSPAKRASTRKAK 201

[Close]

BLAST of IVF0011462 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 73/200 (36.50%), Postives = 100/200 (50.00%), Query Frame = 0


Query: 26  TEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYAIAKY 85
           T   K  +KPV   K  AP +KK      +SHP Y +MI +AI +L E+ GSS YAI K+
Sbjct: 38  TTTAKATKKPV---KAAAPTKKK----TTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKF 97

Query: 86  MEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKL-------------------SE 145
           +EEKHK+ LP  FRK+L + LK   A  KL K+KAS+K+                   + 
Sbjct: 98  IEEKHKS-LPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKKATV 157

Query: 146 IGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKKPKRSTP 205
           + K K K A  VA A A+   K  +         K V K +  +K   KV A KPK  + 
Sbjct: 158 VAKPKGKVAAAVAPAKAKAAAKGTKKPAA-----KVVAKAKVTAKPKAKVTAAKPKSKSV 217

Query: 206 AKPKQPKSIKSPAAKRAKKR 207
           A   + K++   A  +AK+R
Sbjct: 218 AAVSKTKAV--AAKPKAKER 222

The following BLAST results are available for this feature:

BLAST of IVF0011462 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40267	1.8e-44	61.78	Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1	[more]
P08283	5.8e-19	47.54	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P27806	4.9e-18	42.18	Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2	[more]
P23444	2.4e-17	43.56	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
Q08864	1.0e-15	38.57	Histone H1-I OS=Volvox carteri OX=3067 GN=H1-I PE=2 SV=3	[more]

BLAST of IVF0011462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SK97	1.5e-94	100.00	Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001460 PE...	[more]
A0A1S3B1Z2	1.5e-94	100.00	histone H1 OS=Cucumis melo OX=3656 GN=LOC103485111 PE=3 SV=1	[more]
A0A0A0KJB6	1.2e-88	96.59	Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1	[more]
A0A6J1IMR2	4.8e-69	82.21	histone H1 OS=Cucurbita maxima OX=3661 GN=LOC111478808 PE=3 SV=1	[more]
A0A6J1GFQ2	7.0e-68	81.95	histone H1 OS=Cucurbita moschata OX=3662 GN=LOC111453744 PE=3 SV=1	[more]

BLAST of IVF0011462 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440801.1	2.15e-123	100.00	PREDICTED: histone H1 [Cucumis melo] >KAA0025689.1 histone H1 [Cucumis melo var....	[more]
XP_004134874.1	1.74e-115	96.59	histone H1 [Cucumis sativus]	[more]
KAE8647604.1	2.06e-107	91.71	hypothetical protein Csa_003640 [Cucumis sativus]	[more]
XP_038883821.1	7.60e-106	90.91	histone H1 [Benincasa hispida]	[more]
XP_022979052.1	4.17e-90	82.21	histone H1 [Cucurbita maxima]	[more]

BLAST of IVF0011462 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18050.1	2.2e-29	50.30	histone H1-3	[more]
AT2G18050.2	7.5e-22	49.31	histone H1-3	[more]
AT1G06760.1	1.1e-12	40.61	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	5.4e-12	39.66	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.1	1.2e-11	36.50	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 148..162 score: 27.41 coord: 70..87 score: 33.33 coord: 181..198 score: 33.95 coord: 43..64 score: 34.34
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 54..121 e-value: 1.9E-29 score: 113.8
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 57..124 e-value: 5.1E-17 score: 62.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 56..126 score: 29.206251
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 55..137 e-value: 7.15878E-18 score: 73.0391
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 52..138 e-value: 1.9E-19 score: 71.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..174
None	No IPR available	PANTHER	PTHR11467:SF50	HISTONE H1	coord: 7..205
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 7..205
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 55..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011462.1	IVF0011462.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding