IVF0011416 (gene) Melon (IVF77) v1

Overview


Name	IVF0011416
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Integrase
Location	chr11: 6761239 .. 6761592 (+)
RNA-Seq Expression	IVF0011416
Synteny	IVF0011416

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCTCCTCAATCTCATGAGCACAGATTGAAGTTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTCTTATAAAGGGTCATCTGGTGGAAGAAGAGGTGGACATAGTCGTAGAAGCAATGGAAGATCCAACGTCATAACAAATAAGAGTCAGAGAGTAGAGACAATCAATCTTCTTCAACTAAAGGAAGAGGAAGAAGTTCAAATAGAGGAAGAGGCAGAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGATTGTTGAACTAAAAAGGCTAATTCTAATAAAGCAGAAACCACTCTAA

mRNA sequence

ATGGGATCTCCTCAATCTCATGAGCACAGATTGAAGTTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTCTTATAAAGGGTCATCTGGTGGAAGAAGAGGTGGACATAGTCGTAGAAGCAATGGAAGATCCAACGTCATAACAAATAAGAGTCAGAGAGTAGAGACAATCAATCTTCTTCAACTAAAGGAAGAGGAAGAAGTTCAAATAGAGGAAGAGGCAGAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGATTGTTGAACTAAAAAGGCTAATTCTAATAAAGCAGAAACCACTCTAA

Coding sequence (CDS)

ATGGGATCTCCTCAATCTCATGAGCACAGATTGAAGTTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTCTTATAAAGGGTCATCTGGTGGAAGAAGAGGTGGACATAGTCGTAGAAGCAATGGAAGATCCAACGTCATAACAAATAAGAGTCAGAGAGTAGAGACAATCAATCTTCTTCAACTAAAGGAAGAGGAAGAAGTTCAAATAGAGGAAGAGGCAGAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGATTGTTGAACTAAAAAGGCTAATTCTAATAAAGCAGAAACCACTCTAA

Protein sequence

MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRSNVITNKSQRVETINLLQLKEEEEVQIEEEAEVVVVEIFLTYNVSIVDVMDIFKQIVELKRLILIKQKPL

Homology

[Close]

BLAST of IVF0011416 vs. ExPASy TrEMBL
Match: A0A5A7UV00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001240 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-08
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1  MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRSNVI 52
          MGS QSHE RLKLFDSTPS+E FHMQSS +G  GGRRGG   R NG+S ++
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGSRENGQSKIV 51

[Close]

BLAST of IVF0011416 vs. ExPASy TrEMBL
Match: A0A5D3CHY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00100 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.5e-08
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1  MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRSNVI 52
          MGS QSHE RLKLFDSTPS+E FHMQSS +G  GGRRGG   R NG+S ++
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGSRENGQSKIV 51

[Close]

BLAST of IVF0011416 vs. ExPASy TrEMBL
Match: A0A5A7UDJ2 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001470 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1   MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRS 49
           MGS QSHE RLK FD  P EEAF MQ+S++G S GRRGGH RR  GR+
Sbjct: 193 MGSLQSHELRLKQFDDNP-EEAFQMQTSFRGGSRGRRGGHGRRGGGRN 239

[Close]

BLAST of IVF0011416 vs. ExPASy TrEMBL
Match: A0A5A7V047 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005920 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1   MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRS 49
           MGS QSHE RLK FD  P EEAF MQ+S++G S GRRGGH RR  GR+
Sbjct: 249 MGSLQSHELRLKQFDDNP-EEAFQMQTSFRGGSRGRRGGHGRRGGGRN 295

[Close]

BLAST of IVF0011416 vs. ExPASy TrEMBL
Match: A0A5D3CLV1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00180 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.6e-05
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1   MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRS 49
           MGS QSHE RLK FD  P EEAF MQ+S++G S GRRGGH RR  GR+
Sbjct: 193 MGSLQSHELRLKQFDVNP-EEAFQMQTSFRGGSRGRRGGHGRRGGGRN 239

[Close]

BLAST of IVF0011416 vs. NCBI nr
Match: XP_038877452.1 (uncharacterized protein LOC120069734 [Benincasa hispida])

HSP 1 Score: 135 bits (341), Expect = 1.10e-36
Identity = 81/102 (79.41%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRSNVITNKSQRVET 60
           MGS QSHE RLKLFDS P E+AFHMQSS +G SGGRR G   R NGRSNV+T  SQR ET
Sbjct: 110 MGSLQSHELRLKLFDSNPLEKAFHMQSSSRGRSGGRRVGRGNRGNGRSNVVT--SQRAET 169

Query: 61  INLLQLKEEEEVQIEEEAEVVVVEIFLTYNVSIVDVMDIFKQ 102
           INLLQ++E EEVQIE+EAEVVVVEIFLTYNVSIVDVMDIFKQ
Sbjct: 170 INLLQIEEGEEVQIEQEAEVVVVEIFLTYNVSIVDVMDIFKQ 209

[Close]

BLAST of IVF0011416 vs. NCBI nr
Match: KAA0058944.1 (hypothetical protein E6C27_scaffold98G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 3.56e-11
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1  MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRSNVI 51
          MGS QSHE RLKLFDSTPS+E FHMQSS +G  GGRRGG   R NG+S ++
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGSRENGQSKIV 51

[Close]

BLAST of IVF0011416 vs. NCBI nr
Match: TYK10980.1 (hypothetical protein E5676_scaffold874G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 3.56e-11
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1  MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRSNVI 51
          MGS QSHE RLKLFDSTPS+E FHMQSS +G  GGRRGG   R NG+S ++
Sbjct: 1  MGSLQSHELRLKLFDSTPSKEPFHMQSSSRGQLGGRRGGCGSRENGQSKIV 51

[Close]

BLAST of IVF0011416 vs. NCBI nr
Match: XP_038904397.1 (uncharacterized protein LOC120090760 [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 1.29e-06
Identity = 32/48 (66.67%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 54  KSQRVETINLLQLKEEEEVQIEEEAEVVVVEIFLTYNVSIVDVMDIFK 101
           +S R +TI LLQ++E+ +VQ+EEEAEV VV+IFLTYNVSIV+VM IF+
Sbjct: 71  QSHRAKTIKLLQIEEQGQVQVEEEAEVEVVKIFLTYNVSIVEVMGIFQ 118

[Close]

BLAST of IVF0011416 vs. NCBI nr
Match: KAA0051601.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.52e-06
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1   MGSPQSHEHRLKLFDSTPSEEAFHMQSSYKGSSGGRRGGHSRRSNGRS 48
           MGS QSHE RLK FD  P EEAF MQ+S++G S GRRGGH RR  GR+
Sbjct: 193 MGSLQSHELRLKQFDDNP-EEAFQMQTSFRGGSRGRRGGHGRRGGGRN 239

The following BLAST results are available for this feature:

BLAST of IVF0011416 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011416 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV00	3.5e-08	68.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CHY9	3.5e-08	68.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UDJ2	2.1e-05	66.67	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001470 PE=...	[more]
A0A5A7V047	2.1e-05	66.67	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005920 PE=4...	[more]
A0A5D3CLV1	3.6e-05	66.67	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00180 PE=4...	[more]

BLAST of IVF0011416 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877452.1	1.10e-36	79.41	uncharacterized protein LOC120069734 [Benincasa hispida]	[more]
KAA0058944.1	3.56e-11	68.63	hypothetical protein E6C27_scaffold98G001240 [Cucumis melo var. makuwa]	[more]
TYK10980.1	3.56e-11	68.63	hypothetical protein E5676_scaffold874G00100 [Cucumis melo var. makuwa]	[more]
XP_038904397.1	1.29e-06	66.67	uncharacterized protein LOC120090760 [Benincasa hispida]	[more]
KAA0051601.1	1.52e-06	66.67	integrase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011416 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011416.1	IVF0011416.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding