IVF0011400 (gene) Melon (IVF77) v1

Overview
NameIVF0011400
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptiontranscription factor MYB61-like
Locationchr02: 44914 .. 45149 (+)
RNA-Seq ExpressionIVF0011400
SyntenyIVF0011400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGGTCGGAATTTGTGGGGAATAATCCATTTATACTGCAAAATCAAGAAGCTCAATCTCAAACTCAAACAGATGAATCAATGTATGTAGAGACTACCGCGGCGGAAACAGGGTTATAACAGAGGGCGGTGGCGGTGGCGGTGGGTGGCAGAGGCAACAACCTTCCTCCGATGCTGCTGTATATAACAAACACCTCCATACTCTTACTGTTTCTTTTGGAAATACCCTTTAA

mRNA sequence

ATGAAATGGTCGGAATTTGTGGGGAATAATCCATTTATACTGCAAAATCAAGAAGCTCAATCTCAAACTCAAACAGATGAATCAATGGTTATAACAGAGGGCGGTGGCGGTGGCGGTGGGTGGCAGAGGCAACAACCTTCCTCCGATGCTGCTGTATATAACAAACACCTCCATACTCTTACTGTTTCTTTTGGAAATACCCTTTAA

Coding sequence (CDS)

ATGAAATGGTCGGAATTTGTGGGGAATAATCCATTTATACTGCAAAATCAAGAAGCTCAATCTCAAACTCAAACAGATGAATCAATGGTTATAACAGAGGGCGGTGGCGGTGGCGGTGGGTGGCAGAGGCAACAACCTTCCTCCGATGCTGCTGTATATAACAAACACCTCCATACTCTTACTGTTTCTTTTGGAAATACCCTTTAA

Protein sequence

MKWSEFVGNNPFILQNQEAQSQTQTDESMVITEGGGGGGGWQRQQPSSDAAVYNKHLHTLTVSFGNTL
Homology
BLAST of IVF0011400 vs. ExPASy TrEMBL
Match: A0A5D3CGE9 (Transcription factor MYB86 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004770 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 67/78 (85.90%), Postives = 67/78 (85.90%), Query Frame = 0

Query: 1   MKWSEFVGNNPFILQNQEAQSQTQTDESM----------VITEGGGGGGGWQRQQPSSDA 60
           MKWSEFVGNNPFILQNQEAQSQTQTDESM           ITEGGGGGGGWQRQQPSSDA
Sbjct: 317 MKWSEFVGNNPFILQNQEAQSQTQTDESMYVETTAAETGFITEGGGGGGGWQRQQPSSDA 376

Query: 61  AVYNKHLHTLTVSFGNTL 69
           AVYNKHLHTLTVSFGNTL
Sbjct: 377 AVYNKHLHTLTVSFGNTL 394

BLAST of IVF0011400 vs. ExPASy TrEMBL
Match: A0A1S3BNQ4 (transcription factor MYB86 OS=Cucumis melo OX=3656 GN=LOC103492084 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 67/78 (85.90%), Postives = 67/78 (85.90%), Query Frame = 0

Query: 1   MKWSEFVGNNPFILQNQEAQSQTQTDESM----------VITEGGGGGGGWQRQQPSSDA 60
           MKWSEFVGNNPFILQNQEAQSQTQTDESM           ITEGGGGGGGWQRQQPSSDA
Sbjct: 291 MKWSEFVGNNPFILQNQEAQSQTQTDESMYVETTAAETGFITEGGGGGGGWQRQQPSSDA 350

Query: 61  AVYNKHLHTLTVSFGNTL 69
           AVYNKHLHTLTVSFGNTL
Sbjct: 351 AVYNKHLHTLTVSFGNTL 368

BLAST of IVF0011400 vs. ExPASy TrEMBL
Match: A0A0A0M1F2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561370 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-27
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 0

Query: 1   MKWSEFVGNNPFILQNQEAQSQTQTDESM----------VITEGGGGGGGWQRQQPSSDA 60
           MKWSEFVGNNPFILQNQEAQSQTQTD+SM           I EGGGGGGGWQRQQPSSDA
Sbjct: 264 MKWSEFVGNNPFILQNQEAQSQTQTDDSMYVESTAAETGFIVEGGGGGGGWQRQQPSSDA 323

Query: 61  AVYNKHLHTLTVSFGNTL 69
           AVYNKHLHTLTVSFGNTL
Sbjct: 324 AVYNKHLHTLTVSFGNTL 341

BLAST of IVF0011400 vs. ExPASy TrEMBL
Match: A0A6J1I0T9 (transcription factor MYB61-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467974 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-09
Identity = 44/81 (54.32%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 1   MKWSEFVGNNPFIL-------QNQEAQSQTQTDESMVITEGGGG------GGGWQRQQPS 60
           +KWSEFVGN   ++       QNQE Q QT+      I+ G           GWQRQQ S
Sbjct: 292 IKWSEFVGNPYMVMGNAAAAVQNQEFQFQTEPMYVENISRGTAAETGFITEAGWQRQQAS 351

Query: 61  SDAAVYNKHLHTLTVSFGNTL 69
           SD AVYNKHLHTLTVSFGNTL
Sbjct: 352 SD-AVYNKHLHTLTVSFGNTL 371

BLAST of IVF0011400 vs. ExPASy TrEMBL
Match: A0A6J1HZ88 (transcription factor MYB61-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467974 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-09
Identity = 44/81 (54.32%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 1   MKWSEFVGNNPFIL-------QNQEAQSQTQTDESMVITEGGGG------GGGWQRQQPS 60
           +KWSEFVGN   ++       QNQE Q QT+      I+ G           GWQRQQ S
Sbjct: 330 IKWSEFVGNPYMVMGNAAAAVQNQEFQFQTEPMYVENISRGTAAETGFITEAGWQRQQAS 389

Query: 61  SDAAVYNKHLHTLTVSFGNTL 69
           SD AVYNKHLHTLTVSFGNTL
Sbjct: 390 SD-AVYNKHLHTLTVSFGNTL 409

BLAST of IVF0011400 vs. NCBI nr
Match: XP_008450495.1 (PREDICTED: transcription factor MYB86 [Cucumis melo])

HSP 1 Score: 133 bits (335), Expect = 9.15e-36
Identity = 67/78 (85.90%), Postives = 67/78 (85.90%), Query Frame = 0

Query: 1   MKWSEFVGNNPFILQNQEAQSQTQTDESMV----------ITEGGGGGGGWQRQQPSSDA 60
           MKWSEFVGNNPFILQNQEAQSQTQTDESM           ITEGGGGGGGWQRQQPSSDA
Sbjct: 291 MKWSEFVGNNPFILQNQEAQSQTQTDESMYVETTAAETGFITEGGGGGGGWQRQQPSSDA 350

Query: 61  AVYNKHLHTLTVSFGNTL 68
           AVYNKHLHTLTVSFGNTL
Sbjct: 351 AVYNKHLHTLTVSFGNTL 368

BLAST of IVF0011400 vs. NCBI nr
Match: KAA0050976.1 (transcription factor MYB86 [Cucumis melo var. makuwa] >TYK10322.1 transcription factor MYB86 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 1.46e-35
Identity = 67/78 (85.90%), Postives = 67/78 (85.90%), Query Frame = 0

Query: 1   MKWSEFVGNNPFILQNQEAQSQTQTDESMV----------ITEGGGGGGGWQRQQPSSDA 60
           MKWSEFVGNNPFILQNQEAQSQTQTDESM           ITEGGGGGGGWQRQQPSSDA
Sbjct: 317 MKWSEFVGNNPFILQNQEAQSQTQTDESMYVETTAAETGFITEGGGGGGGWQRQQPSSDA 376

Query: 61  AVYNKHLHTLTVSFGNTL 68
           AVYNKHLHTLTVSFGNTL
Sbjct: 377 AVYNKHLHTLTVSFGNTL 394

BLAST of IVF0011400 vs. NCBI nr
Match: XP_004135763.1 (transcription factor MYB61 [Cucumis sativus] >KGN66473.2 hypothetical protein Csa_007192 [Cucumis sativus])

HSP 1 Score: 130 bits (327), Expect = 1.44e-34
Identity = 65/78 (83.33%), Postives = 66/78 (84.62%), Query Frame = 0

Query: 1   MKWSEFVGNNPFILQNQEAQSQTQTDESMV----------ITEGGGGGGGWQRQQPSSDA 60
           MKWSEFVGNNPFILQNQEAQSQTQTD+SM           I EGGGGGGGWQRQQPSSDA
Sbjct: 293 MKWSEFVGNNPFILQNQEAQSQTQTDDSMYVESTAAETGFIVEGGGGGGGWQRQQPSSDA 352

Query: 61  AVYNKHLHTLTVSFGNTL 68
           AVYNKHLHTLTVSFGNTL
Sbjct: 353 AVYNKHLHTLTVSFGNTL 370

BLAST of IVF0011400 vs. NCBI nr
Match: XP_038878689.1 (transcription factor MYB61 [Benincasa hispida])

HSP 1 Score: 108 bits (270), Expect = 2.54e-26
Identity = 56/76 (73.68%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 1   MKWSEFVGNNPFILQNQEAQSQTQ--------TDESMVITEGGGGGGGWQRQQPSSDAAV 60
           +KWSEFVGNNPF+LQNQE+QSQT         T E+  ITEGGG    WQRQQPSSDAAV
Sbjct: 283 IKWSEFVGNNPFMLQNQESQSQTDQSMYVENTTAETAFITEGGG----WQRQQPSSDAAV 342

Query: 61  YNKHLHTLTVSFGNTL 68
           YNKHLHTLTVSFGNTL
Sbjct: 343 YNKHLHTLTVSFGNTL 354

BLAST of IVF0011400 vs. NCBI nr
Match: KAG6590520.1 (Transcription factor MYB61, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 5.36e-13
Identity = 46/86 (53.49%), Postives = 51/86 (59.30%), Query Frame = 0

Query: 1   MKWSEFVGNNPFIL-------QNQEAQSQTQ-----------TDESMVITEGGGGGGGWQ 60
           +KWSEFVGN   ++       QNQE Q QT+             E+  ITE G     WQ
Sbjct: 292 IKWSEFVGNPYMVMGNAAAAVQNQEFQFQTEPMYVENISRGTAAETAFITEAG-----WQ 351

Query: 61  RQQPSSDAAVYNKHLHTLTVSFGNTL 68
           RQQ SSDA VYNKHLHTLTVSFGNTL
Sbjct: 352 RQQASSDA-VYNKHLHTLTVSFGNTL 371

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CGE93.0e-2885.90Transcription factor MYB86 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3BNQ43.0e-2885.90transcription factor MYB86 OS=Cucumis melo OX=3656 GN=LOC103492084 PE=4 SV=1[more]
A0A0A0M1F22.5e-2783.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561370 PE=4 SV=1[more]
A0A6J1I0T93.1e-0954.32transcription factor MYB61-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1HZ883.1e-0954.32transcription factor MYB61-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
Match NameE-valueIdentityDescription
XP_008450495.19.15e-3685.90PREDICTED: transcription factor MYB86 [Cucumis melo][more]
KAA0050976.11.46e-3585.90transcription factor MYB86 [Cucumis melo var. makuwa] >TYK10322.1 transcription ... [more]
XP_004135763.11.44e-3483.33transcription factor MYB61 [Cucumis sativus] >KGN66473.2 hypothetical protein Cs... [more]
XP_038878689.12.54e-2673.68transcription factor MYB61 [Benincasa hispida][more]
KAG6590520.15.36e-1353.49Transcription factor MYB61, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011400.1IVF0011400.1mRNA