IVF0011391 (gene) Melon (IVF77) v1

Overview


Name	IVF0011391
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RAB GTPase 11C
Location	chr06: 17698011 .. 17700605 (-)
RNA-Seq Expression	IVF0011391
Synteny	IVF0011391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAGGAAAGAACCCTAAAATTTGGAGGATAAAAGAAAAAAGAGGATGTTTAGGGAAATCAAGATTGTATGAGTTGGCGGTTGGTCGGAAAAGCCCATATCTAGAAGGGCAGTTTCGGCCTTAAAAGAAAATCATTTTGATTTGAAGTCGGCGGAGTCTCCATTTCGTCTTCATATTCAAAGTGATTCTATTCCTGAGGAGGAACAACAAAAACAAAGTTCTTCAATTTTCGGTTTCCAGATTTGGAAACCTAAATCGGTAAACCAAATAAACGAAGAACCAGATTAAGAAAGAGAGAATACCGCCAAGATATGGCCCGGAGACCTGACGATGACTATGATTATCTCTTCAAAGTTGTGCTTATCGGTGATTCCGGCGTTGGAAAATCCAACCTCCTTTCCCGATTCACTCGGAATGAGTTTTGTTTGGAGTCCAAGTCCACCATTGGCGTCGAATTCGCTACTCGTACTCTTCAGGTATCTCTCTCTCTCTTCCCTCCCTCTTCATTTCTCTCTCATTGTCTCTCATTGGGTATTTATATCTTTGTGGCGTTGTGTGTTTCTGTGCTTTGCATTCTCGATCTGTGTGTAAATCTGAATTTGGATTGGTTTTGGAACTCGAGTTTTTTTTAAAAAAAAAAAGAACTATTTATTTGTTGTAATTCAAGAAATGATCTGTTTTCTCTTTCGGATCTGTGTTCTCAATTACTTGTTCTGGTTGTGTTTTCATTTTAATTTTGAGGAATGCGGGAACTTATTCGTTTCTTTACTGATCTAGATTTGGATGATGAATCGAGAAAATTGCCTGTAGATTTGATTAGGTATAACTTTTGATGGGAGTTGTTCAAATTCCGATCCAAGTATGAGTACGACATTTCATCCTAACTTTTAATGGAGATATATCTGCAGATCATAATTGGTTGTTTTATTGCCATTTAGTCTAGTCTTTAGTACCTTAGTGCCATACTTTAAAAATACGAATCTGAATTAATGACTCCTTTCCTGGAAATGCAATTATTATTTCAGTTTACCTTTATTTCATTCCTTCATTTCCATTTTGATTATGCAATTTGACTCTCTCAAAAAATCGAAAGCAATTCTGAAGAGGACAAGCATTTTACAAATACTTAGGAAAAATCAAGAAACATTTGCAAATCTAGCCGCAAACGTTGATTTACAATGCAATATGTGGTTGCTTAAATCTCAGTTTCTTGGTCTTTATTGATATCTGGGAAGTGTTATATGGTTAGTATCCTGCCACACATATACATGTTTTGATAATAGATGTTGGATCTTCTTAGATCGTCTTGTCTTGAAATGGCTATGTTATATTAGTGGCACATTTGTTGATCGAACAATGCCATAATCTAGATCTATACAGAATGAGGGAAACTTTTGTTATATCCGTTCTTATCCTGCTAAAGACGTTGGTTTTCATTTTCGTTCGACTCGTAAGCTGAGTTAATGTGGAATACAGTGGTGACTCCTTGCTAGATGACTGGAACTGTTTGGTTTTTCGGATATCTGTTTGTGAAATTTGATATATGACGTTTTCTTTTTTGCTCTCTCTGTAGACTTGAATTACAGGCACAAGTTTTCATTTTCTGATCTTTGTCTACGAACTTGGTCTTTGTTTTTTAAATTCAACAAAACGTTTGGATATACAAAGAAAACAGCTTTCAATCATTTGTTTACTGCTTATATCACATTTTAGCCTTCAGGTGGGATTTGGGGGTTCATTTGATTAAGGGGGGATTCATTATATTTATTATTATGCTTTGATTATGAAAGTTATCAAGAAAAAGAAATGCTGCATTATCTTAGGTCGAGGGAAGGACTGTGAAAGCTCAAATATGGGACACGGCCGGTCAAGAGCGTTACAGAGCAATAACAAGTGCTTACTACAGGGGTGCACTTGGAGCGCTTCTAGTGTATGATGTAACAAAACCAATGACATTCGATAACGTAAGCCGTTGGTTGAAGGAACTTAGGGACCATGCCGATTCCAACATAGTAATCATGTTAATTGGAAACAAGACTGATCTGAAACACCTCCGAGCAGTGGCGACAGAGGATGCACAAAGCTATGCTGAGAAAGAAGGACTATCATCATTGAAACGTCTGCTCTCGAAGCAACAAACGTGGAGAAGGCTTTCCAAACTATTCTTTCCGAGATATATCGGATAATCAGTAAAAAATCCCTTAATTCAGAGGAGCCTTCTGCTGCTAATAACATCAAAGAAGGCAAAACCATTGTGGTTGGTGAATCAGAGGCCAATACAAAGAAGGCTTGTTGCTCCTCTTCTTGAAGTTCAACAATTTTTGTAACTCTCTCTCTCTCTCTCTCTCTCTTTCTTATTTGTCATTTGCTTCTTCATTTCTTTCTAGTTACCAACTCTCTTCTGTTATTTGTTTGCTTTTGGATTATGTTGGTGTATAATTTACATATAATTTATATTTTACTTTAGATTTGTTATTATTATTATTATTATTATTATTGTTATTGTTATTGTTATTGTTATTTTCTTCATGTAGCCCCAGGGATCATTGAAATCTCTTGTCAGACACTAATGAGAGGTTCATTTCAGGGA

mRNA sequence

ATGAAATTAGGAAAGAACCCTAAAATTTGGAGGATAAAAGAAAAAAGAGGATGTTTAGGGAAATCAAGATTGTATGAGTTGGCGGTTGGTCGGAAAAGCCCATATCTAGAAGGGCAGTTTCGGCCTTAAAAGAAAATCATTTTGATTTGAAGTCGGCGGAGTCTCCATTTCGTCTTCATATTCAAAGTGATTCTATTCCTGAGGAGGAACAACAAAAACAAAGTTCTTCAATTTTCGGTTTCCAGATTTGGAAACCTAAATCGGTAAACCAAATAAACGAAGAACCAGATTAAGAAAGAGAGAATACCGCCAAGATATGGCCCGGAGACCTGACGATGACTATGATTATCTCTTCAAAGTTGTGCTTATCGGTGATTCCGGCGTTGGAAAATCCAACCTCCTTTCCCGATTCACTCGGAATGAGTTTTGTTTGGAGTCCAAGTCCACCATTGGCGTCGAATTCGCTACTCGTACTCTTCAGGTCGAGGGAAGGACTGTGAAAGCTCAAATATGGGACACGGCCGGTCAAGAGCGTTACAGAGCAATAACAAGTGCTTACTACAGGGGTGCACTTGGAGCGCTTCTAGTGTATGATGTAACAAAACCAATGACATTCGATAACGTAAGCCGTTGGTTGAAGGAACTTAGGGACCATGCCGATTCCAACATAGTAATCATGTTAATTGGAAACAAGACTGATCTGAAACACCTCCGAGCAGTGGCGACAGAGGATGCACAAAGCTATGCTGAGAAAGAAGGACTATCATCATTGAAACGTCTGCTCTCGAAGCAACAAACGTGGAGAAGGCTTTCCAAACTATTCTTTCCGAGATATATCGGATAATCAGTAAAAAATCCCTTAATTCAGAGGAGCCTTCTGCTGCTAATAACATCAAAGAAGGCAAAACCATTGTGGTTGGTGAATCAGAGGCCAATACAAAGAAGGCTTGTTGCTCCTCTTCTTGAAGTTCAACAATTTTTGTAACTCTCTCTCTCTCTCTCTCTCTCTTTCTTATTTGTCATTTGCTTCTTCATTTCTTTCTAGTTACCAACTCTCTTCTGTTATTTGTTTGCTTTTGGATTATGTTGGTGTATAATTTACATATAATTTATATTTTACTTTAGATTTGTTATTATTATTATTATTATTATTATTGTTATTGTTATTGTTATTGTTATTTTCTTCATGTAGCCCCAGGGATCATTGAAATCTCTTGTCAGACACTAATGAGAGGTTCATTTCAGGGA

Coding sequence (CDS)

ATGGCCCGGAGACCTGACGATGACTATGATTATCTCTTCAAAGTTGTGCTTATCGGTGATTCCGGCGTTGGAAAATCCAACCTCCTTTCCCGATTCACTCGGAATGAGTTTTGTTTGGAGTCCAAGTCCACCATTGGCGTCGAATTCGCTACTCGTACTCTTCAGGTCGAGGGAAGGACTGTGAAAGCTCAAATATGGGACACGGCCGGTCAAGAGCGTTACAGAGCAATAACAAGTGCTTACTACAGGGGTGCACTTGGAGCGCTTCTAGTGTATGATGTAACAAAACCAATGACATTCGATAACGTAAGCCGTTGGTTGAAGGAACTTAGGGACCATGCCGATTCCAACATAGTAATCATGTTAATTGGAAACAAGACTGATCTGAAACACCTCCGAGCAGTGGCGACAGAGGATGCACAAAGCTATGCTGAGAAAGAAGGACTATCATCATTGAAACGTCTGCTCTCGAAGCAACAAACGTGGAGAAGGCTTTCCAAACTATTCTTTCCGAGATATATCGGATAA

Protein sequence

MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLKRLLSKQQTWRRLSKLFFPRYIG

Homology

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BLAST of IVF0011391 vs. ExPASy Swiss-Prot
Match: O04486 (Ras-related protein RABA2a OS=Arabidopsis thaliana OX=3702 GN=RABA2A PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.1e-79
Identity = 146/153 (95.42%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPD++YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP TF+NVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS ++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIE 153

[Close]

BLAST of IVF0011391 vs. ExPASy Swiss-Prot
Match: Q39434 (Ras-related protein Rab2BV OS=Beta vulgaris OX=161934 GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 7.1e-71
Identity = 130/153 (84.97%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MA R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T
Sbjct: 1   MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TFDNV RWL+ELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           M+ GNK+DLKHLRAV+ ED Q+ AEKEGLS L+
Sbjct: 121 MMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLE 153

[Close]

BLAST of IVF0011391 vs. ExPASy Swiss-Prot
Match: Q39572 (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.0e-70
Identity = 126/153 (82.35%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           M+ +PDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+T
Sbjct: 1   MSHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           +KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK +TF+NV RWLKELRDHADSNIVI
Sbjct: 61  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           ML+GNK+DLKHLR V TE AQ++ E+EGLS ++
Sbjct: 121 MLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIE 153

[Close]

BLAST of IVF0011391 vs. ExPASy Swiss-Prot
Match: Q9LNW1 (Ras-related protein RABA2b OS=Arabidopsis thaliana OX=3702 GN=RABA2B PE=2 SV=2)

HSP 1 Score: 263.1 bits (671), Expect = 2.3e-69
Identity = 128/153 (83.66%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MA R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T
Sbjct: 1   MANRIDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           M+ GNK+DL HLR+VA ED +S AEKEGLS L+
Sbjct: 121 MMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLE 153

[Close]

BLAST of IVF0011391 vs. ExPASy Swiss-Prot
Match: Q96283 (Ras-related protein RABA2c OS=Arabidopsis thaliana OX=3702 GN=RABA2C PE=2 SV=4)

HSP 1 Score: 263.1 bits (671), Expect = 2.3e-69
Identity = 127/153 (83.01%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           M  R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRT QVEG+T
Sbjct: 1   MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           +KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TFDNV RWL+ELRDHADSNIVI
Sbjct: 61  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           M+ GNK+DL HLR+VA ED QS AEKEGLS L+
Sbjct: 121 MMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLE 153

[Close]

BLAST of IVF0011391 vs. ExPASy TrEMBL
Match: A0A1S3BTD1 (ras-related protein RABA2a OS=Cucumis melo OX=3656 GN=LOC103493317 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS ++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIE 153

[Close]

BLAST of IVF0011391 vs. ExPASy TrEMBL
Match: A0A6J1J221 (ras-related protein RABA2a OS=Cucurbita maxima OX=3661 GN=LOC111482705 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS ++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIE 153

[Close]

BLAST of IVF0011391 vs. ExPASy TrEMBL
Match: A0A0A0L6P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110590 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS ++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIE 153

[Close]

BLAST of IVF0011391 vs. ExPASy TrEMBL
Match: A0A6J1EU78 (ras-related protein RABA2a OS=Cucurbita moschata OX=3662 GN=LOC111435963 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS ++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIE 153

[Close]

BLAST of IVF0011391 vs. ExPASy TrEMBL
Match: A0A6J1FQI3 (ras-related protein RABA2a-like OS=Cucurbita moschata OX=3662 GN=LOC111447868 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 149/153 (97.39%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNV+RWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVNRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS ++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIE 153

[Close]

BLAST of IVF0011391 vs. NCBI nr
Match: XP_008452243.1 (PREDICTED: ras-related protein RABA2a [Cucumis melo] >XP_008452244.1 PREDICTED: ras-related protein RABA2a [Cucumis melo])

HSP 1 Score: 301 bits (770), Expect = 1.73e-101
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150

[Close]

BLAST of IVF0011391 vs. NCBI nr
Match: XP_004133721.1 (ras-related protein RABA2a [Cucumis sativus] >XP_031739127.1 ras-related protein RABA2a [Cucumis sativus] >KGN56262.1 hypothetical protein Csa_009772 [Cucumis sativus])

HSP 1 Score: 301 bits (770), Expect = 1.73e-101
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150

[Close]

BLAST of IVF0011391 vs. NCBI nr
Match: XP_022984392.1 (ras-related protein RABA2a [Cucurbita maxima])

HSP 1 Score: 301 bits (770), Expect = 1.79e-101
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150

[Close]

BLAST of IVF0011391 vs. NCBI nr
Match: XP_022929370.1 (ras-related protein RABA2a [Cucurbita moschata] >XP_023552907.1 ras-related protein RABA2a [Cucurbita pepo subsp. pepo] >KAG7015452.1 Ras-related protein RABA2a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301 bits (770), Expect = 1.79e-101
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150

[Close]

BLAST of IVF0011391 vs. NCBI nr
Match: XP_038905598.1 (ras-related protein RABA2a [Benincasa hispida])

HSP 1 Score: 300 bits (769), Expect = 2.37e-101
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           +KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI
Sbjct: 61  IKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLS 150

[Close]

BLAST of IVF0011391 vs. TAIR 10
Match: AT1G09630.1 (RAB GTPase 11C )

HSP 1 Score: 295.4 bits (755), Expect = 2.9e-80
Identity = 146/153 (95.42%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MARRPD++YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT
Sbjct: 1   MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKP TF+NVSRWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           MLIGNKTDLKHLRAVATEDAQSYAEKEGLS ++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIE 153

[Close]

BLAST of IVF0011391 vs. TAIR 10
Match: AT1G07410.1 (RAB GTPase homolog A2B )

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-70
Identity = 128/153 (83.66%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MA R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T
Sbjct: 1   MANRIDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           M+ GNK+DL HLR+VA ED +S AEKEGLS L+
Sbjct: 121 MMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLE 153

[Close]

BLAST of IVF0011391 vs. TAIR 10
Match: AT3G46830.1 (RAB GTPase homolog A2C )

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-70
Identity = 127/153 (83.01%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           M  R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRT QVEG+T
Sbjct: 1   MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           +KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TFDNV RWL+ELRDHADSNIVI
Sbjct: 61  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           M+ GNK+DL HLR+VA ED QS AEKEGLS L+
Sbjct: 121 MMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLE 153

[Close]

BLAST of IVF0011391 vs. TAIR 10
Match: AT5G59150.1 (RAB GTPase homolog A2D )

HSP 1 Score: 261.9 bits (668), Expect = 3.6e-70
Identity = 127/153 (83.01%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
           MA R + DYDYLFK+VLIGDSGVGK+N+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T
Sbjct: 1   MAHRVEQDYDYLFKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVI 120
           VKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TFDNV RWL+ELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 120

Query: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSSLK 154
           M+ GNK DL HLR+VA ED Q+ AE EGLS L+
Sbjct: 121 MMAGNKADLNHLRSVAEEDGQTLAETEGLSFLE 153

[Close]

BLAST of IVF0011391 vs. TAIR 10
Match: AT5G60860.1 (RAB GTPase homolog A1F )

HSP 1 Score: 247.3 bits (630), Expect = 9.2e-66
Identity = 118/146 (80.82%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 2   ARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTV 61
           A R DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++ V+ + V
Sbjct: 3   AYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIV 62

Query: 62  KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPMTFDNVSRWLKELRDHADSNIVIM 121
           KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+ +TF+NV RWLKELRDH D+NIVIM
Sbjct: 63  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIM 122

Query: 122 LIGNKTDLKHLRAVATEDAQSYAEKE 148
            +GNK DL+HLRAV+TEDA+++AE+E
Sbjct: 123 FVGNKADLRHLRAVSTEDAKAFAERE 148

The following BLAST results are available for this feature:

BLAST of IVF0011391 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04486	4.1e-79	95.42	Ras-related protein RABA2a OS=Arabidopsis thaliana OX=3702 GN=RABA2A PE=2 SV=1	[more]
Q39434	7.1e-71	84.97	Ras-related protein Rab2BV OS=Beta vulgaris OX=161934 GN=RAB2BV PE=2 SV=1	[more]
Q39572	6.0e-70	82.35	Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC6 PE=3 SV=...	[more]
Q9LNW1	2.3e-69	83.66	Ras-related protein RABA2b OS=Arabidopsis thaliana OX=3702 GN=RABA2B PE=2 SV=2	[more]
Q96283	2.3e-69	83.01	Ras-related protein RABA2c OS=Arabidopsis thaliana OX=3702 GN=RABA2C PE=2 SV=4	[more]

BLAST of IVF0011391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTD1	1.3e-78	98.04	ras-related protein RABA2a OS=Cucumis melo OX=3656 GN=LOC103493317 PE=4 SV=1	[more]
A0A6J1J221	1.3e-78	98.04	ras-related protein RABA2a OS=Cucurbita maxima OX=3661 GN=LOC111482705 PE=4 SV=1	[more]
A0A0A0L6P8	1.3e-78	98.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110590 PE=4 SV=1	[more]
A0A6J1EU78	1.3e-78	98.04	ras-related protein RABA2a OS=Cucurbita moschata OX=3662 GN=LOC111435963 PE=4 SV...	[more]
A0A6J1FQI3	2.8e-78	97.39	ras-related protein RABA2a-like OS=Cucurbita moschata OX=3662 GN=LOC111447868 PE...	[more]

BLAST of IVF0011391 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452243.1	1.73e-101	100.00	PREDICTED: ras-related protein RABA2a [Cucumis melo] >XP_008452244.1 PREDICTED: ...	[more]
XP_004133721.1	1.73e-101	100.00	ras-related protein RABA2a [Cucumis sativus] >XP_031739127.1 ras-related protein...	[more]
XP_022984392.1	1.79e-101	100.00	ras-related protein RABA2a [Cucurbita maxima]	[more]
XP_022929370.1	1.79e-101	100.00	ras-related protein RABA2a [Cucurbita moschata] >XP_023552907.1 ras-related prot...	[more]
XP_038905598.1	2.37e-101	99.33	ras-related protein RABA2a [Benincasa hispida]	[more]

BLAST of IVF0011391 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09630.1	2.9e-80	95.42	RAB GTPase 11C	[more]
AT1G07410.1	1.6e-70	83.66	RAB GTPase homolog A2B	[more]
AT3G46830.1	1.6e-70	83.01	RAB GTPase homolog A2C	[more]
AT5G59150.1	3.6e-70	83.01	RAB GTPase homolog A2D	[more]
AT5G60860.1	9.2e-66	80.82	RAB GTPase homolog A1F	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 116..129 score: 50.58 coord: 36..52 score: 36.23 coord: 13..34 score: 55.2 coord: 54..76 score: 52.08
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 13..172 e-value: 1.8E-89 score: 313.2
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 10..172 e-value: 3.5E-11 score: 41.5
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 18..174 e-value: 0.0094 score: -8.7
None	No IPR available	PANTHER	PTHR47978	FAMILY NOT NAMED	coord: 1..152
None	No IPR available	PANTHER	PTHR47978:SF20	RAS-RELATED PROTEIN RABA2A	coord: 1..152
None	No IPR available	PROSITE	PS51419	RAB	coord: 8..175 score: 30.739553
None	No IPR available	CDD	cd01868	Rab11_like	coord: 10..150 e-value: 1.45506E-113 score: 317.58
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 15..158 e-value: 4.6E-9 score: -2.7
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 14..149 e-value: 5.0E-52 score: 175.8
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..175 score: 11.876179
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 6..165 e-value: 6.0E-61 score: 207.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 8..149
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 11..145 e-value: 1.2E-35 score: 120.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011391.1	IVF0011391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0015031	protein transport
cellular_component	GO:0009504	cell plate
cellular_component	GO:0010008	endosome membrane
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding