IVF0011387 (gene) Melon (IVF77) v1

Overview
NameIVF0011387
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCollagen triple helix repeat protein
Locationchr12: 800153 .. 800401 (-)
RNA-Seq ExpressionIVF0011387
SyntenyIVF0011387
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCAGTGAAGAGGAAGAGTCAGACGAAAACTATGGATCCGACAAAGAGGAACAATCAAGCAAAAACTATGGATCCGACGAAGAGGAACAATCCAACTAAGAGGAACAGTCTGGGTCCGGATTGTAGAGGAAGACGATGAGAGGCAAAGAGGAAGACGGTGTACAGAGGAAGAAGATGAGTGAAAGAGGAAGATGATGATTATTTTGGGAAGACTATGAAGATAAGAGGAAAAGAAAACCAATAA

mRNA sequence

ATGGATCCAGTGAAGAGGAAGAGTCAGACGAAAACTATGGATCCGACAAAGAGGAACAATCAAGCAAAAACTATGGATCCGACGAAGAGGAACAATCCAACTAAGAGGAACAGTCTGGGTCCGGATTTGAAAGAGGAAGATGATGATTATTTTGGGAAGACTATGAAGATAAGAGGAAAAGAAAACCAATAA

Coding sequence (CDS)

ATGGATCCAGTGAAGAGGAAGAGTCAGACGAAAACTATGGATCCGACAAAGAGGAACAATCAAGCAAAAACTATGGATCCGACGAAGAGGAACAATCCAACTAAGAGGAACAGTCTGGGTCCGGATTTGAAAGAGGAAGATGATGATTATTTTGGGAAGACTATGAAGATAAGAGGAAAAGAAAACCAATAA

Protein sequence

MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNSLGPDLKEEDDDYFGKTMKIRGKENQ
Homology
BLAST of IVF0011387 vs. ExPASy TrEMBL
Match: A0A5A7UXT0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00860 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.6e-10
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDP------TKRNNPTKRNSLGPDLK 45
          MDPVKRKSQTKTMDPTKRNNQAKTMDP      TKRN+PTKRNS GPD +
Sbjct: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNSLTKRNSPTKRNSPGPDCR 50

BLAST of IVF0011387 vs. ExPASy TrEMBL
Match: A0A5D3DFL7 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001450 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS 39
          MDP KRK QTKTMDPTKRNN+AKTM+PTKRN PTKRN+
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNT 38

BLAST of IVF0011387 vs. ExPASy TrEMBL
Match: A0A5A7UD84 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001290 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-06
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS 39
          MDP KRK QTKTMDPTKRNN+AKTM+PTKR+ PTKRN+
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRSTPTKRNT 38

BLAST of IVF0011387 vs. NCBI nr
Match: KAA0060038.1 (hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.07e-14
Identity = 40/50 (80.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNN------PTKRNSLGPDLK 44
          MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRN+      PTKRNS GPD +
Sbjct: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNSLTKRNSPTKRNSPGPDCR 50

BLAST of IVF0011387 vs. NCBI nr
Match: TYK22248.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.32e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS 38
          MDP KRK QTKTMDPTKRNN+AKTM+PTKRN PTKRN+
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNT 38

BLAST of IVF0011387 vs. NCBI nr
Match: KAA0051389.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.34e-10
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNNPTKRNS 38
          MDP KRK QTKTMDPTKRNN+AKTM+PTKR+ PTKRN+
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRSTPTKRNT 38

BLAST of IVF0011387 vs. NCBI nr
Match: TYK01567.1 (putative transposable element-related protein [Cucumis melo var. makuwa])

HSP 1 Score: 46.2 bits (108), Expect = 6.71e-04
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 13 MDPTKRNNQAKTMDPTKRNNPTKRNSLG 40
          MDPTKRNNQAKTMDPTKRN+  KR SLG
Sbjct: 1  MDPTKRNNQAKTMDPTKRNSLVKRKSLG 28

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UXT07.6e-1080.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DFL72.7e-0784.21Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UD841.0e-0681.58Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
KAA0060038.11.07e-1480.00hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa][more]
TYK22248.12.32e-1184.21Collagen triple helix repeat protein [Cucumis melo var. makuwa][more]
KAA0051389.11.34e-1081.58Collagen triple helix repeat protein [Cucumis melo var. makuwa][more]
TYK01567.16.71e-0485.71putative transposable element-related protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011387.2IVF0011387.2mRNA