IVF0011354 (gene) Melon (IVF77) v1

Overview
NameIVF0011354
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr12: 5668214 .. 5668474 (+)
RNA-Seq ExpressionIVF0011354
SyntenyIVF0011354
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCCACCGGGAGAGGACTTCCCGACGTCGATGATTTCGTCGGCAAAAACGACGTCGAGAGAGGTATTTCTGACGGCATTGATTTCGTCGGCAAAAACGACGTTGGGATAGGCATTCCCGACGCCGTGTTGGTCACGCATCGGGAATACCTATCCCAACGTAGTTCTTCCGACGTTTGTTCCCGATGCCGTGAAAAACGTTGGGATAGTAAGAGTGAGCATGATAGGTCGAAAAACCAAGCCGATCGATCAAACTGA

mRNA sequence

ATGAGGTCCACCGGGAGAGGACTTCCCGACGTCGATGATTTCGTCGGCAAAAACGACGTCGAGAGAGGTATTTCTGACGGCATTGATTTCGTCGGCAAAAACGACGTTGGGATAGGCATTCCCGACGCCGTGTTGGTCACGCATCGGGAATACCTATCCCAACGTAGTTCTTCCGACGTTTGTTCCCGATGCCGTGAAAAACGTTGGGATAGTAAGAGTGAGCATGATAGGTCGAAAAACCAAGCCGATCGATCAAACTGA

Coding sequence (CDS)

ATGAGGTCCACCGGGAGAGGACTTCCCGACGTCGATGATTTCGTCGGCAAAAACGACGTCGAGAGAGGTATTTCTGACGGCATTGATTTCGTCGGCAAAAACGACGTTGGGATAGGCATTCCCGACGCCGTGTTGGTCACGCATCGGGAATACCTATCCCAACGTAGTTCTTCCGACGTTTGTTCCCGATGCCGTGAAAAACGTTGGGATAGTAAGAGTGAGCATGATAGGTCGAAAAACCAAGCCGATCGATCAAACTGA

Protein sequence

MRSTGRGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQRSSSDVCSRCREKRWDSKSEHDRSKNQADRSN
Homology
BLAST of IVF0011354 vs. ExPASy TrEMBL
Match: A0A5D3BBD4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00140 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 2   RSTGRGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQRSSSDV 61
           +   RGLPDV DFVGKNDVERGI D ++FV KNDVG  I DAVLVTH+EYL + +S DV
Sbjct: 621 KDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEYLFRLTSRDV 679

BLAST of IVF0011354 vs. ExPASy TrEMBL
Match: A0A5A7VPX1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00930 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 2   RSTGRGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQRSSSDV 61
           +   RGLPDV DFVGKNDVERGI D ++FV KNDVG  I DAVLVTH+EYL + +S DV
Sbjct: 586 KDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEYLFRLTSRDV 644

BLAST of IVF0011354 vs. ExPASy TrEMBL
Match: A0A5A7SSC5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00060 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-06
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 2   RSTGRGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQ 55
           +  GRG+PD+  FV KN + RGI D +D V K+DVG GIPD VL   R+ LS+
Sbjct: 412 KDVGRGIPDIGGFVAKNSIGRGIPDAVDVVEKHDVGRGIPDVVLFMRRKCLSR 464

BLAST of IVF0011354 vs. ExPASy TrEMBL
Match: A0A5D3BQN2 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G001040 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-05
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 2   RSTGRGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQRSSSDVC 61
           ++ G G+PD    VG  DV  GI+D +  V   DVG GIP+A+LV H  ++SQR S DVC
Sbjct: 82  KTLGEGIPDAIASVGIRDVGEGITDTMKSVSIRDVGRGIPNAMLVMHGGFISQRVSFDVC 141

BLAST of IVF0011354 vs. ExPASy TrEMBL
Match: A0A5A7UPN4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00290 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.7e-05
Identity = 33/55 (60.00%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 6   RGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQRSSSDV 61
           RGLPDV DFV KN V RGI          DV  GIPDAVLVTH+E LS+ +S DV
Sbjct: 488 RGLPDVGDFVSKNGVGRGIL---------DVERGIPDAVLVTHQECLSRLTSPDV 533

BLAST of IVF0011354 vs. NCBI nr
Match: KAA0067621.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 6.73e-15
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 2   RSTGRGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQRSSSDV 60
           +   RGLPDV DFVGKNDVERGI D ++FV KNDVG  I DAVLVTH+EYL + +S DV
Sbjct: 586 KDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEYLFRLTSRDV 644

BLAST of IVF0011354 vs. NCBI nr
Match: TYJ97142.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 6.75e-15
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 2   RSTGRGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQRSSSDV 60
           +   RGLPDV DFVGKNDVERGI D ++FV KNDVG  I DAVLVTH+EYL + +S DV
Sbjct: 621 KDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEYLFRLTSRDV 679

BLAST of IVF0011354 vs. NCBI nr
Match: KAA0032451.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ99895.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 7.32e-08
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 2   RSTGRGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQ 54
           +  GRG+PD+  FV KN + RGI D +D V K+DVG GIPD VL   R+ LS+
Sbjct: 412 KDVGRGIPDIGGFVAKNSIGRGIPDAVDVVEKHDVGRGIPDVVLFMRRKCLSR 464

BLAST of IVF0011354 vs. NCBI nr
Match: TYK01082.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 9.91e-07
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 2   RSTGRGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQRSSSDVC 61
           ++ G G+PD    VG  DV  GI+D +  V   DVG GIP+A+LV H  ++SQR S DVC
Sbjct: 82  KTLGEGIPDAIASVGIRDVGEGITDTMKSVSIRDVGRGIPNAMLVMHGGFISQRVSFDVC 141

BLAST of IVF0011354 vs. NCBI nr
Match: KAA0056276.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.22e-06
Identity = 33/55 (60.00%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 6   RGLPDVDDFVGKNDVERGISDGIDFVGKNDVGIGIPDAVLVTHREYLSQRSSSDV 60
           RGLPDV DFV KN V RGI          DV  GIPDAVLVTH+E LS+ +S DV
Sbjct: 488 RGLPDVGDFVSKNGVGRGIL---------DVERGIPDAVLVTHQECLSRLTSPDV 533

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BBD42.2e-1267.80CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7VPX12.2e-1267.80CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7SSC51.8e-0652.83CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BQN24.5e-0548.33Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7UPN47.7e-0560.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
KAA0067621.16.73e-1567.80CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYJ97142.16.75e-1567.80CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0032451.17.32e-0852.83CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ99895.1 CACTA en-... [more]
TYK01082.19.91e-0748.33zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa][more]
KAA0056276.11.22e-0660.00CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011354.1IVF0011354.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane