IVF0011351 (gene) Melon (IVF77) v1

Overview


Name	IVF0011351
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	zf-RVT domain-containing protein
Location	chr06: 3332743 .. 3333078 (-)
RNA-Seq Expression	IVF0011351
Synteny	IVF0011351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGGGAGGTATTAGAATTCAAAATAATGCACTCCTTGCTAAATGGGCGTGGAGGTACATGAAAGAAGACACCACACTGTGGAGGAAAGTGCTTGGAAGTATCCATGGCAGTGAAACCTTTGATCGGAATATTCTAAACAAATCAGGGAATAGTTTAAGAAGCTCTTGGGTCAGCATCTCAAGAGCATGGAAAAAGGTGGAAATTTTGGCATGGTTCAAGCTTGGTAATGGAAGAAGGCAGGAATTTTGGGCAGATTCATGGGCTGGAGAAATCCCTTTAAAAAATCAATACATGAAGCAATTCAGAATAGCCTTGCTGCCAACAGGTTAA

mRNA sequence

ATGGGATTGGGAGGTATTAGAATTCAAAATAATGCACTCCTTGCTAAATGGGCGTGGAGGTACATGAAAGAAGACACCACACTGTGGAGGAAAGTGCTTGGAAGTATCCATGGCAGTGAAACCTTTGATCGGAATATTCTAAACAAATCAGGGAATAGTTTAAGAAGCTCTTGGGTCAGCATCTCAAGAGCATGGAAAAAGGTGGAAATTTTGGCATGGTTCAAGCTTGGTAATGGAAGAAGGCAGGAATTTTGGGCAGATTCATGGGCTGGAGAAATCCCTTTAAAAAATCAATACATGAAGCAATTCAGAATAGCCTTGCTGCCAACAGGTTAA

Coding sequence (CDS)

ATGGGATTGGGAGGTATTAGAATTCAAAATAATGCACTCCTTGCTAAATGGGCGTGGAGGTACATGAAAGAAGACACCACACTGTGGAGGAAAGTGCTTGGAAGTATCCATGGCAGTGAAACCTTTGATCGGAATATTCTAAACAAATCAGGGAATAGTTTAAGAAGCTCTTGGGTCAGCATCTCAAGAGCATGGAAAAAGGTGGAAATTTTGGCATGGTTCAAGCTTGGTAATGGAAGAAGGCAGGAATTTTGGGCAGATTCATGGGCTGGAGAAATCCCTTTAAAAAATCAATACATGAAGCAATTCAGAATAGCCTTGCTGCCAACAGGTTAA

Protein sequence

MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVSISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIALLPTG

Homology

[Close]

BLAST of IVF0011351 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-05
Identity = 32/98 (32.65%), Postives = 47/98 (47.96%), Query Frame = 0


Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVL-GSIHGSETFDRNILNKSGNSLRSSWV 60
           +G+   +  N AL++K  WR ++E  +LW  VL    H  E  D   L   G S  S+W 
Sbjct: 101 LGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKG-SWSSTWR 160

Query: 61  SISRAWKKV--EILAWFKLGNGRRQEFWADSWAGEIPL 96
           SI+   + V    + W   G+G++  FW D W    PL
Sbjct: 161 SIAIGLRDVVSHGVGWIP-GDGQQIRFWTDRWVSGKPL 196

[Close]

BLAST of IVF0011351 vs. ExPASy TrEMBL
Match: A0A5D3CSP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00990 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.9e-36
Identity = 78/110 (70.91%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
           +GLGGIR ++ ALLAKW WRYMKE+T LWR+VL SIHG ETFD    +KS NSLRS WV 
Sbjct: 60  LGLGGIRNKSMALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVD 119

Query: 61  ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIALLPT 111
           ISR W+KVEILA FKLG GRR  FWADSWAGEIPL+ Q+   FRI+LLPT
Sbjct: 120 ISREWEKVEILAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISLLPT 166

[Close]

BLAST of IVF0011351 vs. ExPASy TrEMBL
Match: A0A5A7UNL3 (GTP-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001920 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.7e-31
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
           +GLGG++I+N ALLAKW W +MKED+ LWR+V+ SIHG + F+   LNKSGNSLRSSW++
Sbjct: 533 LGLGGLKIKNKALLAKWGWTFMKEDSALWRQVIKSIHGCKIFEWQTLNKSGNSLRSSWIN 592

Query: 61  ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIA 107
           IS   KKVE+LA FK+GNG R  FW +SW G  PLK Q+   FRIA
Sbjct: 593 ISGEGKKVEMLAPFKIGNGARVAFWTESWVGGFPLKIQFPSLFRIA 638

[Close]

BLAST of IVF0011351 vs. ExPASy TrEMBL
Match: A0A5D3DH32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold584G00340 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.3e-30
Identity = 68/90 (75.56%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 22  MKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVSISRAWKKVEILAWFKLGNGRR 81
           MKEDT +WR+V+ SIHGSETFD +  +KSGNSLRS WVSISR WKKVEILA FKLGNGRR
Sbjct: 1   MKEDTAMWRQVIRSIHGSETFDWHTQSKSGNSLRSPWVSISREWKKVEILAPFKLGNGRR 60

Query: 82  QEFWADSWAGEIPLKNQYMKQFRIALLPTG 112
             FWADSWA EIPLK Q  K F+IALLP G
Sbjct: 61  VAFWADSWAREIPLKTQNSKLFKIALLPIG 90

[Close]

BLAST of IVF0011351 vs. ExPASy TrEMBL
Match: A0A5A7TN98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00510 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
           +GLGGI+IQN ALLAKW WR+  EDT++WR+V+ S+H    FD + + K  N L+S WVS
Sbjct: 40  LGLGGIKIQNTALLAKWGWRFSMEDTSIWRQVIRSMHSKGAFDLHTVGKFNNGLKSPWVS 99

Query: 61  ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIALLPTG 112
           ISR W+KVE LA FKLGNGRR  FW D W G   L  Q+ K F IALLP+G
Sbjct: 100 ISRTWRKVEALALFKLGNGRRIAFWTDLWIG---LNLQFPKLFIIALLPSG 147

[Close]

BLAST of IVF0011351 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.0e-29
Identity = 64/109 (58.72%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
           +GLGGI+I N ALLAKW WRY KE++ LWR+V+ SIHG E FD     KSGNSLRS WV+
Sbjct: 32  LGLGGIKIHNTALLAKWGWRYSKEESALWRQVIRSIHGKEAFDWFTKGKSGNSLRSPWVN 91

Query: 61  ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIALLP 110
           I+R W+ V+ LA F LGNG R  F  D W G  P+K Q+ + FRIAL P
Sbjct: 92  IARFWRLVDSLASFNLGNGLRIGFRIDPWVGNTPIKEQFSRLFRIALWP 140

[Close]

BLAST of IVF0011351 vs. NCBI nr
Match: TYK14440.1 (uncharacterized protein E5676_scaffold186G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (400), Expect = 9.49e-43
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
           +GLGGIR ++ ALLAKW WRYMKE+T LWR+VL SIHG ETFD    +KS NSLRS WV 
Sbjct: 60  LGLGGIRNKSMALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVD 119

Query: 61  ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIALLPTG 111
           ISR W+KVEILA FKLG GRR  FWADSWAGEIPL+ Q+   FRI+LLPT 
Sbjct: 120 ISREWEKVEILAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISLLPTS 167

[Close]

BLAST of IVF0011351 vs. NCBI nr
Match: TYK22579.1 (hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (353), Expect = 2.88e-39
Identity = 68/90 (75.56%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 22  MKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVSISRAWKKVEILAWFKLGNGRR 81
           MKEDT +WR+V+ SIHGSETFD +  +KSGNSLRS WVSISR WKKVEILA FKLGNGRR
Sbjct: 1   MKEDTAMWRQVIRSIHGSETFDWHTQSKSGNSLRSPWVSISREWKKVEILAPFKLGNGRR 60

Query: 82  QEFWADSWAGEIPLKNQYMKQFRIALLPTG 111
             FWADSWA EIPLK Q  K F+IALLP G
Sbjct: 61  VAFWADSWAREIPLKTQNSKLFKIALLPIG 90

[Close]

BLAST of IVF0011351 vs. NCBI nr
Match: KAA0056660.1 (GTP-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 1.31e-36
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
           +GLGG++I+N ALLAKW W +MKED+ LWR+V+ SIHG + F+   LNKSGNSLRSSW++
Sbjct: 533 LGLGGLKIKNKALLAKWGWTFMKEDSALWRQVIKSIHGCKIFEWQTLNKSGNSLRSSWIN 592

Query: 61  ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIA 106
           IS   KKVE+LA FK+GNG R  FW +SW G  PLK Q+   FRIA
Sbjct: 593 ISGEGKKVEMLAPFKIGNGARVAFWTESWVGGFPLKIQFPSLFRIA 638

[Close]

BLAST of IVF0011351 vs. NCBI nr
Match: KAA0043277.1 (hypothetical protein E6C27_scaffold110G001660 [Cucumis melo var. makuwa] >TYK29341.1 hypothetical protein E5676_scaffold129G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 1.85e-36
Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
           +GLGGI+IQN ALLAKW WR+  EDT++WR+V+ S+H    FD + + K  N L+S WVS
Sbjct: 40  LGLGGIKIQNTALLAKWGWRFSMEDTSIWRQVIRSMHSKGAFDLHTVGKFNNGLKSPWVS 99

Query: 61  ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIALLPTG 111
           ISR W+KVE LA FKLGNGRR  FW D W G   L  Q+ K F IALLP+G
Sbjct: 100 ISRTWRKVEALALFKLGNGRRIAFWTDLWIG---LNLQFPKLFIIALLPSG 147

[Close]

BLAST of IVF0011351 vs. NCBI nr
Match: TYK31267.1 (hypothetical protein E5676_scaffold455G005570 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (326), Expect = 2.92e-36
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 1   MGLGGIRIQNNALLAKWAWRYMKEDTTLWRKVLGSIHGSETFDRNILNKSGNSLRSSWVS 60
           + LGGI+I N  LLAKW WR+ KE++ LWR+++ SIHG E FD     KSG SLR+ WVS
Sbjct: 13  LNLGGIKIHNTTLLAKWGWRFSKEESALWRQIIRSIHGKEPFDWFTKGKSGKSLRNPWVS 72

Query: 61  ISRAWKKVEILAWFKLGNGRRQEFWADSWAGEIPLKNQYMKQFRIALLPTG 111
           I+R W+ ++ L  F LGN RR  FW+D W    P K Q+ + FRIAL  TG
Sbjct: 73  IARVWRSIDSLVSFNLGNSRRIGFWSDPWIVNAPNKEQHSRLFRIALFSTG 123

The following BLAST results are available for this feature:

BLAST of IVF0011351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	4.3e-05	32.65	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of IVF0011351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSP2	4.9e-36	70.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UNL3	4.7e-31	61.32	GTP-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G...	[more]
A0A5D3DH32	2.3e-30	75.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TN98	1.5e-29	58.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T2Y0	2.0e-29	58.72	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of IVF0011351 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14440.1	9.49e-43	70.27	uncharacterized protein E5676_scaffold186G00990 [Cucumis melo var. makuwa]	[more]
TYK22579.1	2.88e-39	75.56	hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa]	[more]
KAA0056660.1	1.31e-36	61.32	GTP-binding protein [Cucumis melo var. makuwa]	[more]
KAA0043277.1	1.85e-36	58.56	hypothetical protein E6C27_scaffold110G001660 [Cucumis melo var. makuwa] >TYK293...	[more]
TYK31267.1	2.92e-36	52.25	hypothetical protein E5676_scaffold455G005570 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011351 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011351.1	IVF0011351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0043167	ion binding