Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTAATGGCTGGTTGGGATTCCCCTACTACCGATCCCCAAGAAGGTAACTGAATTCTCTTTCCATTTCAATTTTAAATTGAATAATTCTCTGAGGGGGTTTTTTATTTTTTATTTTCTTTTTCCTAAAATTGATTTTTGGAATGGTTATCAGTGAGTCATCGGAGGAATAAGTCATTGACGAAAGAGGAAATTGAAGCGTTTTGGAAAACGAAGAAACAAGTGCATGAAGAACATCTGAGAGCAATTTTAAGTCCATTTGAGACATTGGAGGTATATATAAAGATTATTGGGAGTTCTTCTTCATCTTCAATTCTTTTTTGGATTTTAATTATAAGTTAATTAATTATGGAGTTATATGTGTATATGGCAGGAAAAGAAAAGGAAAATGTTGGAAATAATCTACAGAGATCAGCCTCTATGCCTCCATTCAATACAAGGAAGGGTTTACTGGAGAATGTGAAATCTGAAACCAACTTAGAAAAGCCCGAGAAAAATCCCTGGTAATTCTATGTGTGTATATATATATATATATAGTAAAATGAATGAAAATATGTGAACAAAATTTGACATTATTGAAACTTGAAATTTGACAGGTGGAGAAGAAGTAACTGGGCGTTTCTAAACGAACCACCGGAGACAGAAGGGTCGGGTAACAGCTACGTGTCGCAGTTCCACGTTGCAAACATGGCGGCTTCCAGACTTGGCCGTGGTGGCGTCAGTGCTTAA
mRNA sequence
ATGGGTTCTTTAATGGCTGGTTGGGATTCCCCTACTACCGATCCCCAAGAAGTGAGTCATCGGAGGAATAAGTCATTGACGAAAGAGGAAATTGAAGCGTTTTGGAAAACGAAGAAACAAGTGCATGAAGAACATCTGAGAGCAATTTTAAGTCCATTTGAGACATTGGAGTTATATGTGTATATGGCAGGAAAAGAAAAGGAAAATGTTGGAAATAATCTACAGAGATCAGCCTCTATGCCTCCATTCAATACAAGGAAGGGTTTACTGGAGAATGTGAAATCTGAAACCAACTTAGAAAAGCCCGAGAAAAATCCCTGGTGGAGAAGAAGTAACTGGGCGTTTCTAAACGAACCACCGGAGACAGAAGGGTCGGGTAACAGCTACGTGTCGCAGTTCCACGTTGCAAACATGGCGGCTTCCAGACTTGGCCGTGGTGGCGTCAGTGCTTAA
Coding sequence (CDS)
ATGGGTTCTTTAATGGCTGGTTGGGATTCCCCTACTACCGATCCCCAAGAAGTGAGTCATCGGAGGAATAAGTCATTGACGAAAGAGGAAATTGAAGCGTTTTGGAAAACGAAGAAACAAGTGCATGAAGAACATCTGAGAGCAATTTTAAGTCCATTTGAGACATTGGAGTTATATGTGTATATGGCAGGAAAAGAAAAGGAAAATGTTGGAAATAATCTACAGAGATCAGCCTCTATGCCTCCATTCAATACAAGGAAGGGTTTACTGGAGAATGTGAAATCTGAAACCAACTTAGAAAAGCCCGAGAAAAATCCCTGGTGGAGAAGAAGTAACTGGGCGTTTCTAAACGAACCACCGGAGACAGAAGGGTCGGGTAACAGCTACGTGTCGCAGTTCCACGTTGCAAACATGGCGGCTTCCAGACTTGGCCGTGGTGGCGTCAGTGCTTAA
Protein sequence
MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYVYMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPPETEGSGNSYVSQFHVANMAASRLGRGGVSA
Homology
BLAST of IVF0011348 vs. ExPASy TrEMBL
Match:
A0A5D3D820 (Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00760 PE=4 SV=1)
HSP 1 Score: 286.2 bits (731), Expect = 8.0e-74
Identity = 143/150 (95.33%), Postives = 143/150 (95.33%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE
Sbjct: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE--- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
KEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP
Sbjct: 61 ---EKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
Query: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 151
ETEGSGNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 144
BLAST of IVF0011348 vs. ExPASy TrEMBL
Match:
A0A1S3CST6 (uncharacterized protein LOC103503930 OS=Cucumis melo OX=3656 GN=LOC103503930 PE=4 SV=1)
HSP 1 Score: 286.2 bits (731), Expect = 8.0e-74
Identity = 143/150 (95.33%), Postives = 143/150 (95.33%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE
Sbjct: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE--- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
KEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP
Sbjct: 61 ---EKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
Query: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 151
ETEGSGNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 144
BLAST of IVF0011348 vs. ExPASy TrEMBL
Match:
A0A0A0LDC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859670 PE=4 SV=1)
HSP 1 Score: 279.6 bits (714), Expect = 7.5e-72
Identity = 139/150 (92.67%), Postives = 141/150 (94.00%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE
Sbjct: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE--- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
KEK N+GNNLQRSASMPPFNTRKGL EN+KSETNLEKPEKNPWWRRSNWAFLNEPP
Sbjct: 61 ---EKEKGNIGNNLQRSASMPPFNTRKGLRENMKSETNLEKPEKNPWWRRSNWAFLNEPP 120
Query: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 151
ETEGSGNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 144
BLAST of IVF0011348 vs. ExPASy TrEMBL
Match:
A0A6J1J1T2 (uncharacterized protein LOC111481065 OS=Cucurbita maxima OX=3661 GN=LOC111481065 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 117/151 (77.48%), Postives = 132/151 (87.42%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ E
Sbjct: 1 MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEI- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEP 120
K+ E GNNLQRS+S+PPFNTRKGLL+ ++SE +L+ KP+KN WWRRSNWAFLNEP
Sbjct: 61 ----KKVEFGGNNLQRSSSVPPFNTRKGLLD-MESEASLDNKPKKNGWWRRSNWAFLNEP 120
Query: 121 PETEGSGNSYVSQFHVANMAASRLGRGGVSA 151
P EGSGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 PVIEGSGNSYVSQFHVANVAASRLGRGGVGA 145
BLAST of IVF0011348 vs. ExPASy TrEMBL
Match:
A0A6J1FHE8 (uncharacterized protein LOC111445795 OS=Cucurbita moschata OX=3662 GN=LOC111445795 PE=4 SV=1)
HSP 1 Score: 227.6 bits (579), Expect = 3.4e-56
Identity = 116/151 (76.82%), Postives = 131/151 (86.75%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ E
Sbjct: 1 MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEI- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEP 120
K+ E GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+KN WWRRSNWAFLNEP
Sbjct: 61 ----KKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKKNGWWRRSNWAFLNEP 120
Query: 121 PETEGSGNSYVSQFHVANMAASRLGRGGVSA 151
P EGSGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 PVIEGSGNSYVSQFHVANVAASRLGRGGVGA 145
BLAST of IVF0011348 vs. NCBI nr
Match:
XP_008466545.1 (PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo] >KAA0041574.1 putative DNA polymerase epsilon catalytic subunit A [Cucumis melo var. makuwa] >TYK19682.1 putative DNA polymerase epsilon catalytic subunit A [Cucumis melo var. makuwa])
HSP 1 Score: 288 bits (736), Expect = 7.98e-98
Identity = 143/150 (95.33%), Postives = 143/150 (95.33%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE
Sbjct: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE--- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
KEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP
Sbjct: 61 ---EKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
Query: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 150
ETEGSGNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 144
BLAST of IVF0011348 vs. NCBI nr
Match:
XP_004147861.1 (uncharacterized protein LOC101222738 [Cucumis sativus] >KGN59980.1 hypothetical protein Csa_001013 [Cucumis sativus])
HSP 1 Score: 281 bits (719), Expect = 3.13e-95
Identity = 139/150 (92.67%), Postives = 141/150 (94.00%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE
Sbjct: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLE--- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
KEK N+GNNLQRSASMPPFNTRKGL EN+KSETNLEKPEKNPWWRRSNWAFLNEPP
Sbjct: 61 ---EKEKGNIGNNLQRSASMPPFNTRKGLRENMKSETNLEKPEKNPWWRRSNWAFLNEPP 120
Query: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 150
ETEGSGNSYVSQFHVANMAASRLGRGGVSA
Sbjct: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 144
BLAST of IVF0011348 vs. NCBI nr
Match:
XP_038898962.1 (uncharacterized protein LOC120086405 [Benincasa hispida])
HSP 1 Score: 246 bits (628), Expect = 2.19e-81
Identity = 127/150 (84.67%), Postives = 132/150 (88.00%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSP TDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFET E
Sbjct: 1 MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETSE--- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
K+ EN G NLQRSAS+PPF T KGLLE ++SE NLEKP+KN WWRRSNWAFLNEPP
Sbjct: 61 ---EKKMEN-GGNLQRSASLPPFKTGKGLLE-MESEKNLEKPKKNAWWRRSNWAFLNEPP 120
Query: 121 ETEGSGNSYVSQFHVANMAASRLGRGGVSA 150
ETEGSGNSYVSQFHVANMAASRLG GGVSA
Sbjct: 121 ETEGSGNSYVSQFHVANMAASRLGPGGVSA 142
BLAST of IVF0011348 vs. NCBI nr
Match:
XP_022982140.1 (uncharacterized protein LOC111481065 [Cucurbita maxima])
HSP 1 Score: 231 bits (588), Expect = 3.02e-75
Identity = 117/151 (77.48%), Postives = 132/151 (87.42%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ E
Sbjct: 1 MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEI- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEP 120
K+ E GNNLQRS+S+PPFNTRKGLL+ ++SE +L+ KP+KN WWRRSNWAFLNEP
Sbjct: 61 ----KKVEFGGNNLQRSSSVPPFNTRKGLLD-MESEASLDNKPKKNGWWRRSNWAFLNEP 120
Query: 121 PETEGSGNSYVSQFHVANMAASRLGRGGVSA 150
P EGSGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 PVIEGSGNSYVSQFHVANVAASRLGRGGVGA 145
BLAST of IVF0011348 vs. NCBI nr
Match:
XP_022940046.1 (uncharacterized protein LOC111445795 [Cucurbita moschata] >KAG6608544.1 hypothetical protein SDJN03_01886, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037867.1 hypothetical protein SDJN02_01498 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 229 bits (584), Expect = 1.23e-74
Identity = 116/151 (76.82%), Postives = 131/151 (86.75%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ E
Sbjct: 1 MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEI- 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEP 120
K+ E GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+KN WWRRSNWAFLNEP
Sbjct: 61 ----KKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKKNGWWRRSNWAFLNEP 120
Query: 121 PETEGSGNSYVSQFHVANMAASRLGRGGVSA 150
P EGSGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 PVIEGSGNSYVSQFHVANVAASRLGRGGVGA 145
BLAST of IVF0011348 vs. TAIR 10
Match:
AT1G19530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 95.1 bits (235), Expect = 5.0e-20
Identity = 61/139 (43.88%), Postives = 77/139 (55.40%), Query Frame = 0
Query: 1 MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLELYV 60
MGSLM+GWDS DP+ V RR KSLT+EEI+ FWKTKK+ EE S T E
Sbjct: 1 MGSLMSGWDSRVRDPKSV--RRCKSLTREEIDTFWKTKKKNEEEEHVQAFSKLVTQE-GA 60
Query: 61 YMAGKEKENVGNNLQRSASMPPFNTRKGLLENVKSETNLEKPEKNPWWRRSNWAFLNEPP 120
KEK++V + L EN + + + WWR++ WAFLNEP
Sbjct: 61 QSQAKEKKSVDD----------------LFEN--------QSKSSGWWRKTYWAFLNEPR 112
Query: 121 ETEGSGNSYVSQFHVANMA 140
E EG N+YVSQF VA++A
Sbjct: 121 EEEGRPNNYVSQFKVAHIA 112
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D820 | 8.0e-74 | 95.33 | Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa ... | [more] |
A0A1S3CST6 | 8.0e-74 | 95.33 | uncharacterized protein LOC103503930 OS=Cucumis melo OX=3656 GN=LOC103503930 PE=... | [more] |
A0A0A0LDC2 | 7.5e-72 | 92.67 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859670 PE=4 SV=1 | [more] |
A0A6J1J1T2 | 1.2e-56 | 77.48 | uncharacterized protein LOC111481065 OS=Cucurbita maxima OX=3661 GN=LOC111481065... | [more] |
A0A6J1FHE8 | 3.4e-56 | 76.82 | uncharacterized protein LOC111445795 OS=Cucurbita moschata OX=3662 GN=LOC1114457... | [more] |
Match Name | E-value | Identity | Description | |
XP_008466545.1 | 7.98e-98 | 95.33 | PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo] >KAA0041574.1 put... | [more] |
XP_004147861.1 | 3.13e-95 | 92.67 | uncharacterized protein LOC101222738 [Cucumis sativus] >KGN59980.1 hypothetical ... | [more] |
XP_038898962.1 | 2.19e-81 | 84.67 | uncharacterized protein LOC120086405 [Benincasa hispida] | [more] |
XP_022982140.1 | 3.02e-75 | 77.48 | uncharacterized protein LOC111481065 [Cucurbita maxima] | [more] |
XP_022940046.1 | 1.23e-74 | 76.82 | uncharacterized protein LOC111445795 [Cucurbita moschata] >KAG6608544.1 hypothet... | [more] |
Match Name | E-value | Identity | Description | |
AT1G19530.1 | 5.0e-20 | 43.88 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... | [more] |