IVF0011317 (gene) Melon (IVF77) v1

Overview


Name	IVF0011317
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-binding protein 48
Location	chr03: 27068121 .. 27072150 (-)
RNA-Seq Expression	IVF0011317
Synteny	IVF0011317

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAACCGACAAACTTTATATTTCGTATATCAATAAACTGATATACTAACTGCATAGTGTCAACTAACCTATGTATTCGTTTATAATTTTGGAATTTTTTTGTGTAGTTGCCCCAAATTCCATCTTTATCCATGGATCCCTTATTCCTCCGATTGAGAACCCATTTTTCTGCTAAATCATGACAAAAATCTCGGGGGAACGATCGGGAGAAGCATCTCGAGTTGGACGCCGTAGCCTCAAACCAAGCATCTGATCTGAATTTTACGACAAATCCGACCCACAGGTCTTGATGAGTTTCAATTTGTGAGTGAAACAACTAAAGAGCTACAACGACTGCTACTTAAAAAAAGGACGCTCAATCCGAAAGGCAAGCTAGGGCATTCGAATCAGTTGAGGGTTTTGCCGGAACCCTTGTGTGCTTAATTTGTGATTTTGCCAATTGAGGTAACTAAACGGTTTAACTTCAAGAAAACAACGTAAACAACTATGGACAAATGTAGAAAAAGGGCGGGGTTAGATTAGATAACTGGAAATTGGAAATCGGAAATCGAAATTGAGAGAAAGCGGGTTGTTGGAGGATGCCTCGTTTTAGAGACGAGCCCCTTGCGGTTCGCGCCTATACAGTTTGCGATGAGTCAAGGTCCATTCCACCTCTGGTATTTCTCCTCCGCATGATCGAAGGAAGATCTATTTAGCTTCTTCATTTTGAAATTCAACAGGTATTTGATTGTGAGGAACGTCCCAGCCTTGGGTTGTGGAGATGGCTTGCACAAACTGTTCTCCTCCTACGGGAACCTTGAAGAGTAACTTCAATTCTCGTTTCCCCTTCCTAATTCCCATACTTTCTTTTCTAATTCCTCAGATGGGATGATACTTTTTTACCGCTCTCTCATCACATGCTTCCCCCATGGTTGATTGGATTAGCTTCTCATAATTTCAATAACTCTCCTCAGGTGTAAACCCATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTCGGTCACCAATGCCAGGTATTTGCACCTTTCTTCTGGTTTTTCTTTTGTTTCAAAGAATGCTTTATTTGTCCCCCAGAGTTTGGACCATAACAATTTAACTTTTAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGGTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTGTAAGTTACGCTTTGGCATATATATGTGTGTGTCTGTGTGTGTGTAAGATAGGAATTTGTTGCTTTGGGTACATCTGGAAGGTATCAACTTAACAATCCAATGCCACCCACGTTATAGTTAAGAAATGCAAGTTTCCTTCCTATAGTTCATTTTTAAGCATGTATAACATTTTATCAGCTGGCAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGCTCTAATTATACTCTTGAACAGAAGAACTCTCTTGAAAATAGGTTTGAACCATATTAAAAAATTTGCATTTTCTGCAAACTCGACAAGTTTGTTTAAACTCTCTCTCTCTCTCTGTTTCTCTCTCTCTCCGTTTCTCTCTCTCGTTTTGGTAGGAATTATGGAGATGCAGCACTCATTTCCAGTCCCCATGTTTCTCAAATGACAAGAGTTTCCTCTGACCAGGTTTGTTACCGTAGCAGTTTTTCTTCCCTTTTCATGTCATCTTTTATGTTACAATGATTATTAACAATGCTAGGAAACAATTATTCTGTGTTCTTTTAGTTTAAGCTTCTCTTGTACACATGATATTTGACATAGTTCCACTGTGTGCTGCAATATGGGTGCAAGGAGTTCAATCCAACAGATTGCATGATTGTGTCAGGTCCTTAAGCACCTTGGAGAACCACACACCAAAAGCTAAGCTATTGGGGTGGGAGAGCCAAGCCACTCAAGTGCCACATTGATTATCCCATTCTAACCAATGTAGGACCAATACCACCTTGCTTCATAGTAGATTGGTTTGAAAGGCCAATGCAATGTGATAGGTTGCAAGCACAAAATTGGGAAGCTAGATGATTTCTCTTTATTTGTTATGTTATTGGGCACAAAATTCCTGAGGCATTGGAGAAGTCTAGACTCTCCCAACCATCTGTGAAAATACTAGTCAGGGATGTATTGGGAATCTTAGTCAGGATAGTAGAACGGGGATAGTGGTATTTAATTAGTGGTGTCGTGGTTATCAGTAAGGAGAATTGGGGACCCTAGAGGGGAAATGATTTTGGTATTATCCAGTGTAGGACTTCAGAGAGTATAGACATTTGAGAATGTGGTTTTACATCTAAGTGTGAAAAGAATTTTTTTGGTGACAGGTGAACAAAAGCCAAAGATGGAGCTGATGTAAACAATATCTTAAGAAAAAGATTGTTGTAATCACTCGACCCCGAAAACCCCCAAAACATCAACTCCATTCTTGATCATTCATTGTCATTCCTCTTTAGGAACAACCAAGAGCTCTGGTACCGGATTAGTGCAATAAGTTTATGTGGTTTACGTCAAATTTATCACAAGGGGAAACCACCAAACCTCTCTGAAGTTTAAACTCTTTTATGTATAAAAAAAATCCACAATAAAGCAAGTATGGGGACTTAACTTGTATGAAAGATGAGAGTAACTTATAAGTCTCGGTATACGATTGGACTAATCAATAGAATTAACTAACTGGCATTAACAATTTGACTTATTATCTTAATCAAATTAGCTAATTAGACAAGTCATAGAACTATGTTTCCTGCATTTGCTATCTCTGTTCTTTTTTGTCATAGTAGTTGATTGCTTCTGTAGACATCTAACGGAAGGGCTTAAGAATAATATATTTCTCTCATTATGTTTCTACGATATGTTTTTGAAAGGTAGTATTGTTTTATCACATCTATGATAATTGCCTTGCACTATCCACTCAAGAAGTGCAAAGGTACGGTTTACCAAGTATTCTAGATCGCCTATTTTTTAGGTTACCATTTTATATGCATGTATACTCTTTGGTATACTTTCAATTTTTTCAGTTTCAGGTTTTTTACAATCTCTCTTTTTTCCTGGGATAAAATAATAGTGTTGTTTAGAGGAGTAATCTTTTTTGTAGGACCTCTGTGGCACGACTTGGTGGATTTTCTTGATCTTCTTCCTTCAATTGTTTTGGAAGTTTTATTTCACTTTGTTAGATGTAGAGCCATGAAGTCTTTGGTTGTCTACAGTAAATTTTGTTTGTCCTATTGAGTTTTCTTTTATGATGTACATGTCATTTTCACTTGGTTGGGCAAAAGGTAACGAAGATTAAAGGAACATTCTTGATAATGGCTTTTGAAACTTCTTGTTTCTGGGTCTTCGTATTTGCATGTTACTTCGTGTGGCTGAAAATGTCACTTTATTCTTGAGTACAGGATTACTTCGCATCCGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGGTTAAAACTTATATTCATATGATTTATTCTCTACGTTTGATCGCATTTGTTATTTAAACATTGCTTCTTACCTTTGTGTTTTAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAATCACGTCTGGACAATAGGAGGAGAATCTAATGCTAGCTGGCCTCTTTATAGAGACGGTTAGTAGGTGTCTCAACGTTGTATCAAAAGCTATTTTGACATATCGCATACGCCGATTTGCGGTGTACAAATTGAACTGTTTGGCCTTTTATTTCAAAGGTGAAAAAGGAATAGTGCATGCAACAAAGTTCTGTAGAGGAGTGTTTTATTGCCATCACTATAAGCGCTTATTGCTATAATCAGTTCTCACACAAGGATCGTTATGGTAGATTTATAGTATACCTTTGTAATTACTTTTTACCAGAACTCCATTCGACTTATTAATCACTCCGGGAAGATGGATGGAATAACTTCTCC

mRNA sequence

ATTCAACCGACAAACTTTATATTTCGTATATCAATAAACTGATATACTAACTGCATAGTGTCAACTAACCTATGTATTCGTTTATAATTTTGGAATTTTTTTGTGTAGTTGCCCCAAATTCCATCTTTATCCATGGATCCCTTATTCCTCCGATTGAGAACCCATTTTTCTGCTAAATCATGACAAAAATCTCGGGGGAACGATCGGGAGAAGCATCTCGAGTTGGACGCCGTAGCCTCAAACCAAGCATCTGATCTGAATTTTACGACAAATCCGACCCACAGGTCTTGATGAGTTTCAATTTGTGAGTGAAACAACTAAAGAGCTACAACGACTGCTACTTAAAAAAAGGACGCTCAATCCGAAAGGCAAGCTAGGGCATTCGAATCAGTTGAGGGTTTTGCCGGAACCCTTGTGTGCTTAATTTGTGATTTTGCCAATTGAGGTAACTAAACGGTTTAACTTCAAGAAAACAACGTAAACAACTATGGACAAATGTAGAAAAAGGGCGGGGTTAGATTAGATAACTGGAAATTGGAAATCGGAAATCGAAATTGAGAGAAAGCGGGTTGTTGGAGGATGCCTCGTTTTAGAGACGAGCCCCTTGCGGTTCGCGCCTATACAGTTTGCGATGAGTCAAGGTATTTGATTGTGAGGAACGTCCCAGCCTTGGGTTGTGGAGATGGCTTGCACAAACTGTTCTCCTCCTACGGGAACCTTGAAGAGTGTAAACCCATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTCGGTCACCAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGGTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGCAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGCTCTAATTATACTCTTGAACAGAAGAACTCTCTTGAAAATAGGAATTATGGAGATGCAGCACTCATTTCCAGTCCCCATGTTTCTCAAATGACAAGAGTTTCCTCTGACCAGGATTACTTCGCATCCGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAATCACGTCTGGACAATAGGAGGAGAATCTAATGCTAGCTGGCCTCTTTATAGAGACGGTTAGTAGGTGTCTCAACGTTGTATCAAAAGCTATTTTGACATATCGCATACGCCGATTTGCGGTGTACAAATTGAACTGTTTGGCCTTTTATTTCAAAGGTGAAAAAGGAATAGTGCATGCAACAAAGTTCTGTAGAGGAGTGTTTTATTGCCATCACTATAAGCGCTTATTGCTATAATCAGTTCTCACACAAGGATCGTTATGGTAGATTTATAGTATACCTTTGTAATTACTTTTTACCAGAACTCCATTCGACTTATTAATCACTCCGGGAAGATGGATGGAATAACTTCTCC

Coding sequence (CDS)

ATGCCTCGTTTTAGAGACGAGCCCCTTGCGGTTCGCGCCTATACAGTTTGCGATGAGTCAAGGTATTTGATTGTGAGGAACGTCCCAGCCTTGGGTTGTGGAGATGGCTTGCACAAACTGTTCTCCTCCTACGGGAACCTTGAAGAGTGTAAACCCATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTCGGTCACCAATGCCAGGTTTGCAAAAAGAAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTCCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGGTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTTTTAGCACGATTGGATTCTGGCAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGCTCTAATTATACTCTTGAACAGAAGAACTCTCTTGAAAATAGGAATTATGGAGATGCAGCACTCATTTCCAGTCCCCATGTTTCTCAAATGACAAGAGTTTCCTCTGACCAGGATTACTTCGCATCCGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCAGCGAGCAAGAAATCACGTCTGGACAATAGGAGGAGAATCTAA

Protein sequence

MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI

Homology

[Close]

BLAST of IVF0011317 vs. ExPASy Swiss-Prot
Match: A4FVJ7 (RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.4e-24
Identity = 66/180 (36.67%), Postives = 104/180 (57.78%), Query Frame = 0


Query: 2   PRFRD--EPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECD 61
           P++R+     AV+ YT+  ESRYL+V+ VPA+G    L +LF+ YG +EE +P+D    +
Sbjct: 30  PKYREGRRLKAVKVYTINLESRYLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAE 89

Query: 62  EFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLA 121
           +FT+VY ++F  +T+AR AKR  DE  F G +L V YAPE+E++ +TK+KL+ RRR V  
Sbjct: 90  QFTEVYLIQFQKLTSARAAKRHTDEKSFFGGQLHVCYAPEYETVEETKQKLQDRRRYV-- 149

Query: 122 RLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSD 180
                    +  S   AKL +  ++    E  +S + R      +  +P  ++   V+SD
Sbjct: 150 ---------NWASQNAAKL-HSQQAEVNTESSSSTDTRTAEAPIMQKNPEEARRENVNSD 197

[Close]

BLAST of IVF0011317 vs. ExPASy Swiss-Prot
Match: Q5R4U2 (RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.9e-22
Identity = 49/111 (44.14%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 8   PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFV 67
           P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +
Sbjct: 33  PRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGTIEQYNALDEYPAEDFTEVYLI 92

Query: 68  KFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVL 119
           KF ++ +AR AKRK+DE  F G  L V YAPEFE++ +T++KL+VR+  V+
Sbjct: 93  KFMNLQSARAAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQVRKAYVV 143

[Close]

BLAST of IVF0011317 vs. ExPASy Swiss-Prot
Match: Q5RL73 (RNA-binding protein 48 OS=Homo sapiens OX=9606 GN=RBM48 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-21
Identity = 48/111 (43.24%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 8   PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFV 67
           P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +
Sbjct: 33  PRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFTEVYLI 92

Query: 68  KFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVL 119
           KF ++ +AR AKRK+DE  F G  L V YAPEFE++ +T++KL++R+  V+
Sbjct: 93  KFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRKAYVV 143

[Close]

BLAST of IVF0011317 vs. ExPASy Swiss-Prot
Match: Q561R3 (RNA-binding protein 48 OS=Rattus norvegicus OX=10116 GN=Rbm48 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.7e-21
Identity = 47/107 (43.93%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 8   PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFV 67
           P AV+ YT+  ES+YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +
Sbjct: 33  PRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFTEVYLI 92

Query: 68  KFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRR 115
           KF  + +AR AK+K+DE  F G  L V YAPEFE++ +T++KLE R+
Sbjct: 93  KFVKLQSARIAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLEERK 139

[Close]

BLAST of IVF0011317 vs. ExPASy Swiss-Prot
Match: A6QPE1 (RNA-binding protein 48 OS=Bos taurus OX=9913 GN=RBM48 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-20
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 8   PLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFV 67
           P AV+ YT+  ES YL+++ VPA+G    L + F+ YG +E+   +D    ++FT+VY +
Sbjct: 33  PRAVKVYTINLESWYLLIQGVPAVGAMKELVERFALYGTIEQYNALDEYPAEDFTEVYLI 92

Query: 68  KFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREV 118
           KF ++ +AR AKRK+DE  F G  L V YAPEFE++ +T++KL  R   V
Sbjct: 93  KFLNLQSARIAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLRERNAYV 142

[Close]

BLAST of IVF0011317 vs. ExPASy TrEMBL
Match: A0A5A7V5K4 (RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002210 PE=3 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 9.1e-122
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180
           LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ
Sbjct: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 227
           DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]

BLAST of IVF0011317 vs. ExPASy TrEMBL
Match: A0A1S3BA34 (RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 9.1e-122
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180
           LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ
Sbjct: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 227
           DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]

BLAST of IVF0011317 vs. ExPASy TrEMBL
Match: A0A0A0LQL2 (RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 5.3e-114
Identity = 213/226 (94.25%), Postives = 220/226 (97.35%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MP FRDE LAVRAYTVCDESRYLIVRNVPALGCGD LHKLFSSYGNLEECKPMDAEECDE
Sbjct: 33  MPCFRDESLAVRAYTVCDESRYLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDE 92

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEFESL+DTKEKLEVRRREVLAR
Sbjct: 93  FTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 152

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180
           LDSGRPRG+AVSSTTAKLTN SRS+YTL+QKNSLE RNYGDAALIS+PHVSQ+TRVSSDQ
Sbjct: 153 LDSGRPRGTAVSSTTAKLTNQSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQ 212

Query: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 227
           DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 213 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 258

[Close]

BLAST of IVF0011317 vs. ExPASy TrEMBL
Match: A0A6J1K7Z4 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.2e-107
Identity = 199/226 (88.05%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MPR+ +EP AVR YT+CDESRYLIVRNVPALGCGD L KLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFH V+NARFAKRKLDEFVFLGNRLQVSYAP+FESL+DTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180
           LDSGRPRGSAV+S T K TNPS S+YTLEQKNSLE RNYGDAAL S+PHVSQ+TRVSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 227
           DYFASESMNQTVHLVREKLDKIQS SEHL+AGP SK+SR+DNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]

BLAST of IVF0011317 vs. ExPASy TrEMBL
Match: A0A6J1HAQ6 (RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.1e-106
Identity = 197/226 (87.17%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MPR+ +EP AVR YT+CDESRYLIVRNVPALGCGD L KLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFH V+NARFAKRKLDEFVFLGNRLQVSYAP+FESL+DTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180
           L+SGRPRGSAV+S T K TNPS S+YTLEQK+SLE RNYGDAAL S+PHVSQ+TRVSSDQ
Sbjct: 121 LNSGRPRGSAVNSATTKFTNPSHSHYTLEQKSSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 227
           DYFASESMNQTVHLVREKLDKIQS SEHL+AGP SK+SR+DNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]

BLAST of IVF0011317 vs. NCBI nr
Match: XP_008444339.1 (PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo] >KAA0061081.1 RNA-binding protein 48 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 442 bits (1136), Expect = 3.24e-156
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180
           LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ
Sbjct: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]

BLAST of IVF0011317 vs. NCBI nr
Match: XP_004142975.1 (RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical protein Csa_018618 [Cucumis sativus])

HSP 1 Score: 416 bits (1069), Expect = 1.67e-145
Identity = 213/226 (94.25%), Postives = 220/226 (97.35%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MP FRDE LAVRAYTVCDESRYLIVRNVPALGCGD LHKLFSSYGNLEECKPMDAEECDE
Sbjct: 33  MPCFRDESLAVRAYTVCDESRYLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDE 92

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEFESL+DTKEKLEVRRREVLAR
Sbjct: 93  FTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 152

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180
           LDSGRPRG+AVSSTTAKLTN SRS+YTL+QKNSLE RNYGDAALIS+PHVSQ+TRVSSDQ
Sbjct: 153 LDSGRPRGTAVSSTTAKLTNQSRSHYTLKQKNSLEKRNYGDAALISNPHVSQITRVSSDQ 212

Query: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 213 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 258

[Close]

BLAST of IVF0011317 vs. NCBI nr
Match: XP_011649485.1 (RNA-binding protein 48 isoform X1 [Cucumis sativus])

HSP 1 Score: 412 bits (1058), Expect = 8.22e-144
Identity = 213/227 (93.83%), Postives = 221/227 (97.36%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MP FRDE LAVRAYTVCDESRYLIVRNVPALGCGD LHKLFSSYGNLEECKPMDAEECDE
Sbjct: 33  MPCFRDESLAVRAYTVCDESRYLIVRNVPALGCGDDLHKLFSSYGNLEECKPMDAEECDE 92

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEFESL+DTKEKLEVRRREVLAR
Sbjct: 93  FTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLAR 152

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLE-NRNYGDAALISSPHVSQMTRVSSD 180
           LDSGRPRG+AVSSTTAKLTN SRS+YTL+QKNSLE +RNYGDAALIS+PHVSQ+TRVSSD
Sbjct: 153 LDSGRPRGTAVSSTTAKLTNQSRSHYTLKQKNSLEKSRNYGDAALISNPHVSQITRVSSD 212

Query: 181 QDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226
           QDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 213 QDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 259

[Close]

BLAST of IVF0011317 vs. NCBI nr
Match: XP_038884635.1 (RNA-binding protein 48 isoform X1 [Benincasa hispida])

HSP 1 Score: 408 bits (1048), Expect = 8.42e-143
Identity = 208/226 (92.04%), Postives = 216/226 (95.58%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MPRF DEP AVR YTVCDESRYL+VRNVPALGCGD L KLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRFTDEPPAVRVYTVCDESRYLVVRNVPALGCGDDLLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFH VT+ARFAKRKLDEFVFLGNRLQVSYAPEFESL+DT+EKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVTSARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTEEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180
           LDSGRPRGSAVSSTTAK TNPSRS+YTLEQKNSLE RNYGD  LIS+PHVSQ+TRVSSDQ
Sbjct: 121 LDSGRPRGSAVSSTTAKRTNPSRSHYTLEQKNSLETRNYGDTTLISNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 226

[Close]

BLAST of IVF0011317 vs. NCBI nr
Match: XP_022997621.1 (RNA-binding protein 48 isoform X1 [Cucurbita maxima])

HSP 1 Score: 394 bits (1012), Expect = 2.58e-137
Identity = 199/226 (88.05%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           MPR+ +EP AVR YT+CDESRYLIVRNVPALGCGD L KLFSSYGNLEECKPMDAEECDE
Sbjct: 1   MPRYTNEPPAVRVYTICDESRYLIVRNVPALGCGDELLKLFSSYGNLEECKPMDAEECDE 60

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVYFVKFH V+NARFAKRKLDEFVFLGNRLQVSYAP+FESL+DTKEKLEVRRREVLAR
Sbjct: 61  FTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEKLEVRRREVLAR 120

Query: 121 LDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQ 180
           LDSGRPRGSAV+S T K TNPS S+YTLEQKNSLE RNYGDAAL S+PHVSQ+TRVSSDQ
Sbjct: 121 LDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPHVSQITRVSSDQ 180

Query: 181 DYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226
           DYFASESMNQTVHLVREKLDKIQS SEHL+AGP SK+SR+DNRRRI
Sbjct: 181 DYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]

BLAST of IVF0011317 vs. TAIR 10
Match: AT2G27790.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.7 bits (605), Expect = 9.4e-63
Identity = 133/251 (52.99%), Postives = 169/251 (67.33%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           M R++DE  AVR YTVCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C E
Sbjct: 1   MGRYKDETPAVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAE 60

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVY++KF  +TNARFAKRKLDE  FLGNRLQ+SYAPE+E++ DTK+KLE RR+EVLAR
Sbjct: 61  FTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLAR 120

Query: 121 LDSGRPRGSAVSSTTAKLTNP--SRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSS 180
           L+   P+    +S   KL  P  ++++    Q+  +E + +   A         +TRVSS
Sbjct: 121 LN---PQKEKSTSQVTKLAGPALTQTDNVSSQRREMEYQFHRGNA--------PVTRVSS 180

Query: 181 DQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPAS----------------------- 227
           DQ+YFAS SMNQTV  VREKL+KI+ S    +  P+S                       
Sbjct: 181 DQEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDL 240

[Close]

BLAST of IVF0011317 vs. TAIR 10
Match: AT2G27790.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.7 bits (605), Expect = 9.4e-63
Identity = 133/251 (52.99%), Postives = 169/251 (67.33%), Query Frame = 0


Query: 1   MPRFRDEPLAVRAYTVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDE 60
           M R++DE  AVR YTVCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C E
Sbjct: 1   MGRYKDETPAVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAE 60

Query: 61  FTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLAR 120
           FTDVY++KF  +TNARFAKRKLDE  FLGNRLQ+SYAPE+E++ DTK+KLE RR+EVLAR
Sbjct: 61  FTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLAR 120

Query: 121 LDSGRPRGSAVSSTTAKLTNP--SRSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSS 180
           L+   P+    +S   KL  P  ++++    Q+  +E + +   A         +TRVSS
Sbjct: 121 LN---PQKEKSTSQVTKLAGPALTQTDNVSSQRREMEYQFHRGNA--------PVTRVSS 180

Query: 181 DQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPAS----------------------- 227
           DQ+YFAS SMNQTV  VREKL+KI+ S    +  P+S                       
Sbjct: 181 DQEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRLQPSSQIQPDL 240

[Close]

BLAST of IVF0011317 vs. TAIR 10
Match: AT5G27300.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 209.5 bits (532), Expect = 2.7e-54
Identity = 120/221 (54.30%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 15  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTN 74
           +VCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF  +TN
Sbjct: 371 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 430

Query: 75  ARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGSAVSST 134
           A    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR+EVLARL+   P  +  +S 
Sbjct: 431 A----RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLN---PHKAKSTSQ 490

Query: 135 TAKLTNPS---RSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQT 194
             KL  P+     N++  ++      + G+A          +TRVSS Q+YFAS SMNQ 
Sbjct: 491 VTKLAGPALTQTDNFSPRRREMDYQFHRGNA---------PVTRVSSYQEYFASSSMNQM 550

Query: 195 VHLVREKLDKIQSSSEHLQAGPAS------KKSRLDNRRRI 227
           V  VREKL+KI+ S    +  P+S      K++R+DNRRRI
Sbjct: 551 VKTVREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 575

[Close]

BLAST of IVF0011317 vs. TAIR 10
Match: AT5G27300.2 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 209.5 bits (532), Expect = 2.7e-54
Identity = 120/221 (54.30%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 15  TVCDESRYLIVRNVPALGCGDGLHKLFSSYGNLEECKPMDAEECDEFTDVYFVKFHSVTN 74
           +VCDESRY+IVRNVPALGCGD L +LF +YG +EECKPMDAE+C EFTDVY++KF  +TN
Sbjct: 346 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 405

Query: 75  ARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEVRRREVLARLDSGRPRGSAVSST 134
           A    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE RR+EVLARL+   P  +  +S 
Sbjct: 406 A----RKLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLN---PHKAKSTSQ 465

Query: 135 TAKLTNPS---RSNYTLEQKNSLENRNYGDAALISSPHVSQMTRVSSDQDYFASESMNQT 194
             KL  P+     N++  ++      + G+A          +TRVSS Q+YFAS SMNQ 
Sbjct: 466 VTKLAGPALTQTDNFSPRRREMDYQFHRGNA---------PVTRVSSYQEYFASSSMNQM 525

Query: 195 VHLVREKLDKIQSSSEHLQAGPAS------KKSRLDNRRRI 227
           V  VREKL+KI+ S    +  P+S      K++R+DNRRRI
Sbjct: 526 VKTVREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNRRRI 550

The following BLAST results are available for this feature:

BLAST of IVF0011317 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FVJ7	8.4e-24	36.67	RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1	[more]
Q5R4U2	7.9e-22	44.14	RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1	[more]
Q5RL73	3.0e-21	43.24	RNA-binding protein 48 OS=Homo sapiens OX=9606 GN=RBM48 PE=1 SV=1	[more]
Q561R3	8.7e-21	43.93	RNA-binding protein 48 OS=Rattus norvegicus OX=10116 GN=Rbm48 PE=2 SV=1	[more]
A6QPE1	2.5e-20	43.64	RNA-binding protein 48 OS=Bos taurus OX=9913 GN=RBM48 PE=2 SV=2	[more]

BLAST of IVF0011317 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5K4	9.1e-122	100.00	RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]
A0A1S3BA34	9.1e-122	100.00	RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1	[more]
A0A0A0LQL2	5.3e-114	94.25	RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1	[more]
A0A6J1K7Z4	2.2e-107	88.05	RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1	[more]
A0A6J1HAQ6	3.1e-106	87.17	RNA-binding protein 48 OS=Cucurbita moschata OX=3662 GN=LOC111462353 PE=3 SV=1	[more]

BLAST of IVF0011317 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444339.1	3.24e-156	100.00	PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo] >KAA0061081.1 RNA-bi...	[more]
XP_004142975.1	1.67e-145	94.25	RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical pro...	[more]
XP_011649485.1	8.22e-144	93.83	RNA-binding protein 48 isoform X1 [Cucumis sativus]	[more]
XP_038884635.1	8.42e-143	92.04	RNA-binding protein 48 isoform X1 [Benincasa hispida]	[more]
XP_022997621.1	2.58e-137	88.05	RNA-binding protein 48 isoform X1 [Cucurbita maxima]	[more]

BLAST of IVF0011317 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27790.1	9.4e-63	52.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27790.2	9.4e-63	52.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G27300.1	2.7e-54	54.30	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G27300.2	2.7e-54	54.30	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 23..92 e-value: 2.3E-6 score: 27.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 21..99 score: 9.950859
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 16..113 e-value: 1.2E-9 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..146
IPR039599	RNA-binding protein 48	PANTHER	PTHR20957	UNCHARACTERIZED	coord: 3..226
IPR034264	RBM48, RNA recognition motif	CDD	cd12442	RRM_RBM48	coord: 11..110 e-value: 5.15716E-54 score: 166.699
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011317.5	IVF0011317.5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding