IVF0011289 (gene) Melon (IVF77) v1

Overview
NameIVF0011289
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPhosphopantothenoylcysteine decarboxylase subunit VHS3-like
Locationchr05: 19043542 .. 19043727 (+)
RNA-Seq ExpressionIVF0011289
SyntenyIVF0011289
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAAGATGAAGATGAAGATCCTCTCGACTGCAGGTGCATTGAAGAAGATGAAGATGACGATCCTCTCAATTATAGACACATTGAAGAAGATGAAGATGATGATCCTCTCGACTGCAACACATGTGAGAAGATGAAGATGAAGATAATGATCCTCTCGACTGCAACATGTGTAAGAAGATGA

mRNA sequence

ATGGGAGAAGATGAAGATGAAGATCCTCTCGACTGCAGGTGCATTGAAGAAGATGAAGATGACGATCCTCTCAATTATAGACACATTGAAGAAGATGAAGATGATGATCCTCTCGACTGCAACACATGTGAGAAGATGAAGATGAAGATAATGATCCTCTCGACTGCAACATGTGTAAGAAGATGA

Coding sequence (CDS)

ATGGGAGAAGATGAAGATGAAGATCCTCTCGACTGCAGGTGCATTGAAGAAGATGAAGATGACGATCCTCTCAATTATAGACACATTGAAGAAGATGAAGATGATGATCCTCTCGACTGCAACACATGTGAGAAGATGAAGATGAAGATAATGATCCTCTCGACTGCAACATGTGTAAGAAGATGA

Protein sequence

MGEDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVRR
Homology
BLAST of IVF0011289 vs. ExPASy TrEMBL
Match: A0A5A7TVT5 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00160 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MGEDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVR 60
          MGEDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVR
Sbjct: 1  MGEDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVR 60

Query: 61 R 62
          R
Sbjct: 61 R 61

BLAST of IVF0011289 vs. ExPASy TrEMBL
Match: A0A5A7SX67 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001230 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.5e-05
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 3   EDED-EDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVRR 62
           EDED +DPLDC  IE++++DDPL+   I EDEDDDPL CNT  KMKM +MIL  AT  +R
Sbjct: 65  EDEDKDDPLDCGYIEDEDEDDPLDCNSI-EDEDDDPLSCNTL-KMKMMMMILLAATYGKR 122

BLAST of IVF0011289 vs. ExPASy TrEMBL
Match: A0A1S3CK92 (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.5e-05
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 3   EDED-EDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVRR 62
           EDED +DPLDC  IE++++DDPL+   I EDEDDDPL CNT  KMKM +MIL  AT  +R
Sbjct: 152 EDEDKDDPLDCGYIEDEDEDDPLDCNSI-EDEDDDPLSCNTL-KMKMMMMILLAATYGKR 209

BLAST of IVF0011289 vs. NCBI nr
Match: KAA0047572.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYK14966.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (315), Expect = 2.55e-36
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MGEDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVR 60
          MGEDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVR
Sbjct: 1  MGEDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVR 60

BLAST of IVF0011289 vs. NCBI nr
Match: KAA0035630.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.07e-08
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 3   EDED-EDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVRR 61
           EDED +DPLDC  IE++++DDPL+   IE DEDDDPL CNT  KMKM +MIL  AT  +R
Sbjct: 65  EDEDKDDPLDCGYIEDEDEDDPLDCNSIE-DEDDDPLSCNTL-KMKMMMMILLAATYGKR 122

BLAST of IVF0011289 vs. NCBI nr
Match: XP_008463661.1 (PREDICTED: prostatic spermine-binding protein-like [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 4.41e-08
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 3   EDED-EDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVRR 61
           EDED +DPLDC  IE++++DDPL+   IE DEDDDPL CNT  KMKM +MIL  AT  +R
Sbjct: 152 EDEDKDDPLDCGYIEDEDEDDPLDCNSIE-DEDDDPLSCNTL-KMKMMMMILLAATYGKR 209

BLAST of IVF0011289 vs. NCBI nr
Match: KAA0035590.1 (glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK30947.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 6.90e-06
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 3   EDEDED-PLDCRCIEEDEDDDPLNYRHIE-----------EDEDDDPLDCNTCEKMKM 48
           ED+DED PLDC CIE++++ DPL+Y  IE           EDEDDDPLDCN  + MK+
Sbjct: 48  EDKDEDYPLDCGCIEDEDEYDPLSYGCIEDEDEPPCCGRIEDEDDDPLDCNKWKMMKI 105

BLAST of IVF0011289 vs. NCBI nr
Match: XP_008456992.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo] >TYK25823.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 8.83e-06
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 3   EDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLD 39
           EDEDEDP  C CIE DEDDD L+Y HIE DEDDDPLD
Sbjct: 117 EDEDEDPFSCGCIE-DEDDDSLSYSHIE-DEDDDPLD 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TVT51.2e-25100.00Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A5A7SX675.5e-0561.67Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3CK925.5e-0561.67prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 ... [more]
Match NameE-valueIdentityDescription
KAA0047572.12.55e-36100.00phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
KAA0035630.11.07e-0861.67prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 p... [more]
XP_008463661.14.41e-0861.67PREDICTED: prostatic spermine-binding protein-like [Cucumis melo][more]
KAA0035590.16.90e-0653.45glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK30947.1 glutamic ... [more]
XP_008456992.18.83e-0678.38PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS00387PPASEcoord: 34..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011289.1IVF0011289.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding