IVF0011273 (gene) Melon (IVF77) v1

Overview
NameIVF0011273
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr09: 8049672 .. 8050235 (-)
RNA-Seq ExpressionIVF0011273
SyntenyIVF0011273
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAACCTCATATTTGAACCGACCATTCTGCTTTAAAGGAGCCTACTTCAAACGTTGGAAGCAGAAGATGTTATTTTTCTTAACTCTAAAAAAGGTTGCCACTACATGCACCAACGAAGAGCTAAAAGTTCCCAAGATTGATCCAATCGAGGAGCAACTCCAGGCTCAGACCACATGGACAGAGTCAGATTTTATTTGTAAAAATCTCATATTTAATGGACTTACTGACGAACTCTATGATTATTACAGTACTATCTCCACAATGAAAGAAGTCTGGGATGCATTACAAAAGAAGTACGACACTGAAGAAGCTGGATCCAAGAAGTATGCAGTAAGTCAATACTTGTGGTACCATATGGTTGATGATAAATTAGTTGAAGTTCAATCACACAAATTGCAAAAGATTGCCCGCAAAATAATAAGTGAAGGTATGCCTTTAGATGAATAATTTCACGTTGCTGTTATTATTGACAAGCTACCTCCACTATGGAAGGACTTTAAAAATACCCTAAAGCATAAGATGAAGGAGTTCTCTCTGGAGAGCCAGATCACTCGACTGTGA

mRNA sequence

ATGCTAACCTCATATTTGAACCGACCATTCTGCTTTAAAGGAGCCTACTTCAAACGTTGGAAGCAGAAGATGTTATTTTTCTTAACTCTAAAAAAGGTTGCCACTACATGCACCAACGAAGAGCTAAAAGTTCCCAAGATTGATCCAATCGAGGAGCAACTCCAGGCTCAGACCACATGGACAGAGTCAGATTTTATTTGTAAAAATCTCATATTTAATGGACTTACTGACGAACTCTATGATTATTACAGTACTATCTCCACAATGAAAGAAGTCTGGGATGCATTACAAAAGAAGTACGACACTGAAGAAGCTGGATCCAAGAAGTATGCAGTAAGTCAATACTTGTGGTACCATATGCTACCTCCACTATGGAAGGACTTTAAAAATACCCTAAAGCATAAGATGAAGGAGTTCTCTCTGGAGAGCCAGATCACTCGACTGTGA

Coding sequence (CDS)

ATGCTAACCTCATATTTGAACCGACCATTCTGCTTTAAAGGAGCCTACTTCAAACGTTGGAAGCAGAAGATGTTATTTTTCTTAACTCTAAAAAAGGTTGCCACTACATGCACCAACGAAGAGCTAAAAGTTCCCAAGATTGATCCAATCGAGGAGCAACTCCAGGCTCAGACCACATGGACAGAGTCAGATTTTATTTGTAAAAATCTCATATTTAATGGACTTACTGACGAACTCTATGATTATTACAGTACTATCTCCACAATGAAAGAAGTCTGGGATGCATTACAAAAGAAGTACGACACTGAAGAAGCTGGATCCAAGAAGTATGCAGTAAGTCAATACTTGTGGTACCATATGCTACCTCCACTATGGAAGGACTTTAAAAATACCCTAAAGCATAAGATGAAGGAGTTCTCTCTGGAGAGCCAGATCACTCGACTGTGA

Protein sequence

MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTWTESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHMLPPLWKDFKNTLKHKMKEFSLESQITRL
Homology
BLAST of IVF0011273 vs. ExPASy TrEMBL
Match: A0A5A7TGJ2 (Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00180 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.6e-58
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW
Sbjct: 9   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 68

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQY 116
           TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYA   Y
Sbjct: 69  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAEEVY 123

BLAST of IVF0011273 vs. ExPASy TrEMBL
Match: A0A5D3DC59 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00340 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.4e-54
Identity = 117/187 (62.57%), Postives = 131/187 (70.05%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+LKV + DPIEEQL+   TW
Sbjct: 9   LMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKLKVSEKDPIEEQLKNLATW 68

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHM 120
           TE+DFICKNLI NGLTDELYDYYST++T KEVWDALQKKYDT+EA SKKYAVS+YL Y M
Sbjct: 69  TETDFICKNLILNGLTDELYDYYSTMTTGKEVWDALQKKYDTKEARSKKYAVSRYLRYQM 128

Query: 121 ---------------------------------------LPPLWKDFKNTLKHKMKEFSL 149
                                                  LP LWKDFKNTL+HK KEFSL
Sbjct: 129 TDDKSVETQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPQLWKDFKNTLRHKTKEFSL 188

BLAST of IVF0011273 vs. ExPASy TrEMBL
Match: A0A5A7UYY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00440 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.3e-54
Identity = 116/187 (62.03%), Postives = 130/187 (69.52%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           +++S LNR F F+GA+FKRWKQK+LFFLTLKKVAT CT E+ KV + DP EEQL+   TW
Sbjct: 9   LMSSDLNRLFRFEGAHFKRWKQKLLFFLTLKKVATACTTEKPKVSEKDPTEEQLKNLATW 68

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHM 120
           TE+DFICKNLI NGLTDELYDYYST++T KEVWDALQKKYDTEEAGSKKYAVS+YL Y M
Sbjct: 69  TETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLRYQM 128

Query: 121 ---------------------------------------LPPLWKDFKNTLKHKMKEFSL 149
                                                  LPPLWKDFKNTL+HK KEFSL
Sbjct: 129 TDDKSVEAQSHEIQKIAHEIISEGMPLDDQFQVVVIIDKLPPLWKDFKNTLRHKTKEFSL 188

BLAST of IVF0011273 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.9e-53
Identity = 114/187 (60.96%), Postives = 131/187 (70.05%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+ KV + DP +EQL+  TTW
Sbjct: 5   LMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLKNLTTW 64

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHM 120
           TE+DFICKNLI NGLTDELYDYYST++T K+VW+ALQKKYDTEEAGSKKYAVS+YL Y M
Sbjct: 65  TETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQM 124

Query: 121 ---------------------------------------LPPLWKDFKNTLKHKMKEFSL 149
                                                  LP LWKDFKNTL+HK KEFSL
Sbjct: 125 TDDRSVEAQSHEIQKIAHEIINEGMPLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSL 184

BLAST of IVF0011273 vs. ExPASy TrEMBL
Match: A0A5A7UA92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00260 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 112/187 (59.89%), Postives = 129/187 (68.98%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+ KV + DP +EQL+  TTW
Sbjct: 5   LMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKPKVSEKDPTKEQLKNLTTW 64

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHM 120
           TE+DFICKNLI NGLTDELYDYYST++T K+VW+ALQKKYDTEEAGSKKYAVS+YL Y M
Sbjct: 65  TETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQM 124

Query: 121 ---------------------------------------LPPLWKDFKNTLKHKMKEFSL 149
                                                  L  LWKDFKNTL+HK KEFSL
Sbjct: 125 TDDRSVEAQSHEIQKIAHEIINEGMPLDDQFQVTIIIDKLLLLWKDFKNTLRHKTKEFSL 184

BLAST of IVF0011273 vs. NCBI nr
Match: KAA0040535.1 (receptor-like protein 12 [Cucumis melo var. makuwa] >TYK05577.1 receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 2.52e-76
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW
Sbjct: 9   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 68

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQY 115
           TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYA   Y
Sbjct: 69  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAEEVY 123

BLAST of IVF0011273 vs. NCBI nr
Match: KAA0060458.1 (uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK18543.1 uncharacterized protein E5676_scaffold119G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (561), Expect = 2.62e-70
Identity = 116/187 (62.03%), Postives = 130/187 (69.52%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           +++S LNR F F+GA+FKRWKQK+LFFLTLKKVAT CT E+ KV + DP EEQL+   TW
Sbjct: 9   LMSSDLNRLFRFEGAHFKRWKQKLLFFLTLKKVATACTTEKPKVSEKDPTEEQLKNLATW 68

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHM 120
           TE+DFICKNLI NGLTDELYDYYST++T KEVWDALQKKYDTEEAGSKKYAVS+YL Y M
Sbjct: 69  TETDFICKNLILNGLTDELYDYYSTMTTAKEVWDALQKKYDTEEAGSKKYAVSRYLRYQM 128

Query: 121 ---------------------------------------LPPLWKDFKNTLKHKMKEFSL 148
                                                  LPPLWKDFKNTL+HK KEFSL
Sbjct: 129 TDDKSVEAQSHEIQKIAHEIISEGMPLDDQFQVVVIIDKLPPLWKDFKNTLRHKTKEFSL 188

BLAST of IVF0011273 vs. NCBI nr
Match: KAA0065374.1 (uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa] >TYK20869.1 uncharacterized protein E5676_scaffold682G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (564), Expect = 6.62e-66
Identity = 117/187 (62.57%), Postives = 131/187 (70.05%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+LKV + DPIEEQL+   TW
Sbjct: 9   LMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTTEKLKVSEKDPIEEQLKNLATW 68

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHM 120
           TE+DFICKNLI NGLTDELYDYYST++T KEVWDALQKKYDT+EA SKKYAVS+YL Y M
Sbjct: 69  TETDFICKNLILNGLTDELYDYYSTMTTGKEVWDALQKKYDTKEARSKKYAVSRYLRYQM 128

Query: 121 ---------------------------------------LPPLWKDFKNTLKHKMKEFSL 148
                                                  LP LWKDFKNTL+HK KEFSL
Sbjct: 129 TDDKSVETQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPQLWKDFKNTLRHKTKEFSL 188

BLAST of IVF0011273 vs. NCBI nr
Match: TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 217 bits (552), Expect = 4.25e-65
Identity = 114/187 (60.96%), Postives = 131/187 (70.05%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           +++S LNRPF F+GA+FKRWKQKMLFFLTLKKVAT CT E+ KV + DP +EQL+  TTW
Sbjct: 5   LMSSDLNRPFRFEGAHFKRWKQKMLFFLTLKKVATACTIEKPKVSEKDPTKEQLKNLTTW 64

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHM 120
           TE+DFICKNLI NGLTDELYDYYST++T K+VW+ALQKKYDTEEAGSKKYAVS+YL Y M
Sbjct: 65  TETDFICKNLILNGLTDELYDYYSTMTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQM 124

Query: 121 ---------------------------------------LPPLWKDFKNTLKHKMKEFSL 148
                                                  LP LWKDFKNTL+HK KEFSL
Sbjct: 125 TDDRSVEAQSHEIQKIAHEIINEGMPLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSL 184

BLAST of IVF0011273 vs. NCBI nr
Match: KAA0050358.1 (uncharacterized protein E6C27_scaffold88G00900 [Cucumis melo var. makuwa] >TYK03571.1 uncharacterized protein E5676_scaffold293G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (527), Expect = 1.98e-64
Identity = 111/187 (59.36%), Postives = 125/187 (66.84%), Query Frame = 0

Query: 1   MLTSYLNRPFCFKGAYFKRWKQKMLFFLTLKKVATTCTNEELKVPKIDPIEEQLQAQTTW 60
           +++  LN PF F+GA+FKRWKQKMLFFLTLKKVATTCT E+LKV + DP EEQL+   TW
Sbjct: 9   LMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPTEEQLKNLATW 68

Query: 61  TESDFICKNLIFNGLTDELYDYYSTISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHM 120
           TE+DFI KNLI NGLTDELYDYYST++T KEVWDA QKKYDTEE GSKKYAV+ YL Y +
Sbjct: 69  TETDFIYKNLILNGLTDELYDYYSTMTTAKEVWDAQQKKYDTEETGSKKYAVNPYLRYQI 128

Query: 121 ---------------------------------------LPPLWKDFKNTLKHKMKEFSL 148
                                                  LP LWKDFKNTL+HK K FSL
Sbjct: 129 TNDRSVEAQSHEIQKIAHEIISEGMPLDDQFQVAVIIDKLPSLWKDFKNTLRHKTKVFSL 188

BLAST of IVF0011273 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 48.9 bits (115), Expect = 4.1e-06
Identity = 34/119 (28.57%), Postives = 55/119 (46.22%), Query Frame = 0

Query: 12  FKGAYFKRWKQKMLFFLTLKKVATTCTNE-----ELKVPKIDPIEEQLQAQTT---WTES 71
           F G  +  W  +M  FL   K+    +         + P+ +P  E  +A  T   W   
Sbjct: 198 FDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNP-REITRADATGKKWLRD 257

Query: 72  DFICKNLIFNGLTDELYDYYS-TISTMKEVWDALQKKYDTEEAGSKKYAVSQYLWYHML 122
           D++C   + N L+D LY  YS      KE+WD L+  Y  +E+ SK+  V +Y+ + M+
Sbjct: 258 DYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRMV 315

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TGJ24.6e-5897.39Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3DC592.4e-5462.57Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v... [more]
A0A5A7UYY45.3e-5462.03Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BDS35.9e-5360.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UA921.4e-5159.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0040535.12.52e-7697.39receptor-like protein 12 [Cucumis melo var. makuwa] >TYK05577.1 receptor-like pr... [more]
KAA0060458.12.62e-7062.03uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0065374.16.62e-6662.57uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa] >TYK20... [more]
TYJ98000.14.25e-6560.96hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa][more]
KAA0050358.11.98e-6459.36uncharacterized protein E6C27_scaffold88G00900 [Cucumis melo var. makuwa] >TYK03... [more]
Match NameE-valueIdentityDescription
AT4G00980.14.1e-0628.57zinc knuckle (CCHC-type) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 60..120
e-value: 2.7E-6
score: 27.2
NoneNo IPR availablePANTHERPTHR47592PBF68 PROTEINcoord: 12..147
NoneNo IPR availablePANTHERPTHR47592:SF11SUBFAMILY NOT NAMEDcoord: 12..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011273.1IVF0011273.1mRNA