IVF0011262 (gene) Melon (IVF77) v1

Overview
NameIVF0011262
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr04: 32122721 .. 32123008 (-)
RNA-Seq ExpressionIVF0011262
SyntenyIVF0011262
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGACGACTTTCAAGTTATTGATCGGAGTACATATGCCCTGCTGATCCAAGCACTATGTTCAGCAAACATGATTTCGGAGGCACTTGCAAATTTGCATCATATGATTGAAAAAGGCTACCCTCCAACACCGATTATCATTGACGTTATTGTTCAAACACTTTGTCACAGGGGAAGCATCGACGAAACATCGTGTGTTTTGGGGCATGGAATCCCTTTCACAACGATTTCTTTTGACTTGTTAATGCATGAGCTTAATACACAGGGAATGTATATCAGTGCTTGA

mRNA sequence

ATGAAGGACGACTTTCAAGTTATTGATCGGAGTACATATGCCCTGCTGATCCAAGCACTATGTTCAGCAAACATGATTTCGGAGGCACTTGCAAATTTGCATCATATGATTGAAAAAGGCTACCCTCCAACACCGATTATCATTGACGTTATTGTTCAAACACTTTGTCACAGGGGAAGCATCGACGAAACATCGTGTGTTTTGGGGCATGGAATCCCTTTCACAACGATTTCTTTTGACTTGTTAATGCATGAGCTTAATACACAGGGAATGTATATCAGTGCTTGA

Coding sequence (CDS)

ATGAAGGACGACTTTCAAGTTATTGATCGGAGTACATATGCCCTGCTGATCCAAGCACTATGTTCAGCAAACATGATTTCGGAGGCACTTGCAAATTTGCATCATATGATTGAAAAAGGCTACCCTCCAACACCGATTATCATTGACGTTATTGTTCAAACACTTTGTCACAGGGGAAGCATCGACGAAACATCGTGTGTTTTGGGGCATGGAATCCCTTTCACAACGATTTCTTTTGACTTGTTAATGCATGAGCTTAATACACAGGGAATGTATATCAGTGCTTGA

Protein sequence

MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
Homology
[Close]
BLAST of IVF0011262 vs. ExPASy Swiss-Prot
Match: O49436 (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 24/86 (27.91%), Postives = 44/86 (51.16%), Query Frame = 0 

Query: 9   DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVL 68
           D  TY  L+  LC    I EA+  L  M  +G  P+P+I +V++  LC +G +   + ++
Sbjct: 221 DGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLV 280

Query: 69  GH----GIPFTTISFDLLMHELNTQG 91
            +    G     ++++ L+H L  +G
Sbjct: 281 DNMFLKGCVPNEVTYNTLIHGLCLKG 306

[Close]
BLAST of IVF0011262 vs. ExPASy Swiss-Prot
Match: Q9SHK2 (Pentatricopeptide repeat-containing protein At1g06580 OS=Arabidopsis thaliana OX=3702 GN=At1g06580 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.3e-04
Identity = 22/85 (25.88%), Postives = 42/85 (49.41%), Query Frame = 0 

Query: 12  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH- 71
           T+  L+   C  N   EA++ +  ++  GY P  +I + I+ +LC +G ++    VL H 
Sbjct: 151 TFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHM 210

Query: 72  ---GIPFTTISFDLLMHELNTQGMY 93
              GI    ++++ L+  L   G +
Sbjct: 211 KKMGIRPDVVTYNSLITRLFHSGTW 235

[Close]
BLAST of IVF0011262 vs. ExPASy Swiss-Prot
Match: Q9ASZ8 (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX=3702 GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.3e-04
Identity = 20/55 (36.36%), Postives = 31/55 (56.36%), Query Frame = 0 

Query: 9   DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDE 64
           D  T++ LI  LC    +SEAL  +  M+E G+ PT I ++ +V  LC  G + +
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSD 195

[Close]
BLAST of IVF0011262 vs. ExPASy Swiss-Prot
Match: Q9CAN5 (Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g63080 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.3e-04
Identity = 24/79 (30.38%), Postives = 41/79 (51.90%), Query Frame = 0 

Query: 12  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH- 71
           TY ++I  LC  + +S ALA L  M++ GY P+ + ++ ++   CH   I E   ++   
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161

Query: 72  ---GIPFTTISFDLLMHEL 87
              G    T++F  L+H L
Sbjct: 162 VEMGYQPDTVTFTTLVHGL 180

[Close]
BLAST of IVF0011262 vs. ExPASy TrEMBL
Match: A0A5D3DMQ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00200 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.0e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS
Sbjct: 30  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 89

Query: 61  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 96
           IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
Sbjct: 90  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 124

[Close]
BLAST of IVF0011262 vs. ExPASy TrEMBL
Match: A0A5A7TQU3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005880 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MK DFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS
Sbjct: 30  MKGDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 89

Query: 61  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 96
           IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
Sbjct: 90  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 124

[Close]
BLAST of IVF0011262 vs. ExPASy TrEMBL
Match: A0A6J1J506 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481420 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.8e-30
Identity = 67/95 (70.53%), Postives = 76/95 (80.00%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MK++FQVIDRSTY LLIQALCS N  SEALANLHHMI KGY P  I IDV+VQ LCH GS
Sbjct: 379 MKNEFQVIDRSTYGLLIQALCSGNRTSEALANLHHMIGKGYSPWAITIDVMVQALCHSGS 438

Query: 61  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 96
             E  CVLGHGI F+ ISFDL++ ELN +GM++SA
Sbjct: 439 ASEALCVLGHGIRFSRISFDLIIEELNEEGMWLSA 473

[Close]
BLAST of IVF0011262 vs. ExPASy TrEMBL
Match: A0A6J1F9P1 (pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita moschata OX=3662 GN=LOC111442091 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MK++ QVIDRSTY LLIQALCS N  SEALANLHHMI KGY P  I IDV+VQ LCH G 
Sbjct: 379 MKNELQVIDRSTYGLLIQALCSGNRTSEALANLHHMIGKGYSPRAITIDVMVQALCHSGG 438

Query: 61  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 96
             E  CVLGHGI F+ ISFDL++ ELN +GM+ SA
Sbjct: 439 ASEALCVLGHGIRFSRISFDLVIEELNEEGMWFSA 473

[Close]
BLAST of IVF0011262 vs. ExPASy TrEMBL
Match: A0A6J1DW66 (pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charantia OX=3673 GN=LOC111024057 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MK++FQVI RSTY ++I ALCS N ISEA+ANLHHMI KGY P  I I+V+V+ LC RGS
Sbjct: 372 MKNEFQVIHRSTYGVVIPALCSGNKISEAVANLHHMIRKGYSPRAITINVVVEALCRRGS 431

Query: 61  IDETSCVLG---------HGIPFTTISFDLLMHELNTQGMYISA 96
            +E   V+G         H IPF+ +S+DL++ ELN QGM+  A
Sbjct: 432 TNEALGVVGLGLVGDGHHHVIPFSRVSYDLIIDELNKQGMWFDA 475

[Close]
BLAST of IVF0011262 vs. NCBI nr
Match: TYK24907.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (503), Expect = 1.46e-63
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS
Sbjct: 30  MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 89

Query: 61  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 95
           IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
Sbjct: 90  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 124

[Close]
BLAST of IVF0011262 vs. NCBI nr
Match: KAA0044227.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (496), Expect = 1.70e-62
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MK DFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS
Sbjct: 30  MKGDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 89

Query: 61  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 95
           IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA
Sbjct: 90  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 124

[Close]
BLAST of IVF0011262 vs. NCBI nr
Match: XP_038904608.1 (pentatricopeptide repeat-containing protein At1g09900-like [Benincasa hispida])

HSP 1 Score: 152 bits (385), Expect = 9.64e-42
Identity = 73/95 (76.84%), Postives = 79/95 (83.16%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MKDD+QVID+STY LLIQALCS NMISEALANLHHMIEKGY P  IIIDV+VQTLCHRGS
Sbjct: 373 MKDDYQVIDQSTYGLLIQALCSGNMISEALANLHHMIEKGYSPRAIIIDVVVQTLCHRGS 432

Query: 61  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 95
           +DE   VLGHGIPF   SFDL++ ELN Q M  SA
Sbjct: 433 VDEALLVLGHGIPFRRFSFDLIIDELNKQEMRFSA 467

[Close]
BLAST of IVF0011262 vs. NCBI nr
Match: XP_022982589.1 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 141 bits (355), Expect = 2.39e-37
Identity = 67/95 (70.53%), Postives = 76/95 (80.00%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MK++FQVIDRSTY LLIQALCS N  SEALANLHHMI KGY P  I IDV+VQ LCH GS
Sbjct: 379 MKNEFQVIDRSTYGLLIQALCSGNRTSEALANLHHMIGKGYSPWAITIDVMVQALCHSGS 438

Query: 61  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 95
             E  CVLGHGI F+ ISFDL++ ELN +GM++SA
Sbjct: 439 ASEALCVLGHGIRFSRISFDLIIEELNEEGMWLSA 473

[Close]
BLAST of IVF0011262 vs. NCBI nr
Match: KAG6580429.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (344), Expect = 9.23e-36
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MK++ QVIDRSTY LLIQALCS N  SEALANLHHMI KGY P  I IDV+VQ LCH G 
Sbjct: 379 MKNELQVIDRSTYGLLIQALCSGNRTSEALANLHHMIGKGYSPRAITIDVMVQALCHSGG 438

Query: 61  IDETSCVLGHGIPFTTISFDLLMHELNTQGMYISA 95
             E  CVLGHGI F+ ISFDL++ ELN +GM+ SA
Sbjct: 439 ASEALCVLGHGIRFSRISFDLIIEELNEEGMWFSA 473

[Close]
BLAST of IVF0011262 vs. TAIR 10
Match: AT1G77340.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 26/70 (37.14%), Postives = 37/70 (52.86%), Query Frame = 0 

Query: 1   MKDDFQVIDRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGS 60
           MKDD    +  TY +LI ALC +   SEA+     M E G  P   +  V++Q+ C   +
Sbjct: 251 MKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDT 310

Query: 61  IDETSCVLGH 71
           +DE S +L H
Sbjct: 311 LDEASGLLEH 320

[Close]
BLAST of IVF0011262 vs. TAIR 10
Match: AT4G20090.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 7.6e-06
Identity = 24/86 (27.91%), Postives = 44/86 (51.16%), Query Frame = 0 

Query: 9   DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVL 68
           D  TY  L+  LC    I EA+  L  M  +G  P+P+I +V++  LC +G +   + ++
Sbjct: 221 DGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLV 280

Query: 69  GH----GIPFTTISFDLLMHELNTQG 91
            +    G     ++++ L+H L  +G
Sbjct: 281 DNMFLKGCVPNEVTYNTLIHGLCLKG 306

[Close]
BLAST of IVF0011262 vs. TAIR 10
Match: AT1G12620.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 20/55 (36.36%), Postives = 31/55 (56.36%), Query Frame = 0 

Query: 9   DRSTYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDE 64
           D  T++ LI  LC    +SEAL  +  M+E G+ PT I ++ +V  LC  G + +
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSD 195

[Close]
BLAST of IVF0011262 vs. TAIR 10
Match: AT1G06580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 22/85 (25.88%), Postives = 42/85 (49.41%), Query Frame = 0 

Query: 12  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH- 71
           T+  L+   C  N   EA++ +  ++  GY P  +I + I+ +LC +G ++    VL H 
Sbjct: 151 TFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHM 210

Query: 72  ---GIPFTTISFDLLMHELNTQGMY 93
              GI    ++++ L+  L   G +
Sbjct: 211 KKMGIRPDVVTYNSLITRLFHSGTW 235

[Close]
BLAST of IVF0011262 vs. TAIR 10
Match: AT1G63080.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 24/79 (30.38%), Postives = 41/79 (51.90%), Query Frame = 0 

Query: 12  TYALLIQALCSANMISEALANLHHMIEKGYPPTPIIIDVIVQTLCHRGSIDETSCVLGH- 71
           TY ++I  LC  + +S ALA L  M++ GY P+ + ++ ++   CH   I E   ++   
Sbjct: 102 TYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161

Query: 72  ---GIPFTTISFDLLMHEL 87
              G    T++F  L+H L
Sbjct: 162 VEMGYQPDTVTFTTLVHGL 180

The following BLAST results are available for this feature:
BLAST of IVF0011262 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O494361.1e-0427.91Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX... [more]
Q9SHK25.3e-0425.88Pentatricopeptide repeat-containing protein At1g06580 OS=Arabidopsis thaliana OX... [more]
Q9ASZ85.3e-0436.36Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX... [more]
Q9CAN55.3e-0430.38Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidop... [more]
BLAST of IVF0011262 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DMQ74.0e-47100.00Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7TQU32.6e-4698.95Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1J5065.8e-3070.53pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like OS=Cuc... [more]
A0A6J1F9P11.4e-2868.42pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita moschata... [more]
A0A6J1DW661.5e-2254.81pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charanti... [more]
BLAST of IVF0011262 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK24907.11.46e-63100.00pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
KAA0044227.11.70e-6298.95pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_038904608.19.64e-4276.84pentatricopeptide repeat-containing protein At1g09900-like [Benincasa hispida][more]
XP_022982589.12.39e-3770.53pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucur... [more]
KAG6580429.19.23e-3668.42Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
BLAST of IVF0011262 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G77340.11.2e-0637.14Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G20090.17.6e-0627.91Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G12620.13.8e-0536.36Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G06580.13.8e-0525.88Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G63080.13.8e-0530.38Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 12..44
e-value: 1.5E-5
score: 22.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 11.070971
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..94
e-value: 1.6E-10
score: 42.6
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..95
NoneNo IPR availablePANTHERPTHR47942:SF36PPR CONTAINING PLANT-LIKE PROTEINcoord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011262.1IVF0011262.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding