IVF0011253 (gene) Melon (IVF77) v1

Overview
NameIVF0011253
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCell division protein ftsH
Locationchr05: 11863682 .. 11863973 (+)
RNA-Seq ExpressionIVF0011253
SyntenyIVF0011253
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGTATATTTTTAAGTTTCTAAAGGTGTATTTGGAATGGTATAAATCGTTAAACAAAAAATAATATGTATATATATGGTAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAG

mRNA sequence

ATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAG

Coding sequence (CDS)

ATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAG

Protein sequence

MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGTQNVVYQD
Homology
BLAST of IVF0011253 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-20
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVRR ERCLG +LK IKSNKDD I+I DNTEEE RYEEPIQY+PLQTIY DDDEQELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQNVVYQD 71
          T T  VVYQ+
Sbjct: 61 TDTLIVVYQN 70

BLAST of IVF0011253 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-19
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVRR ERCLGSRLK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+Q IYP DDE+EL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQNVVYQD 71
          TGTQ VVY D
Sbjct: 61 TGTQIVVYDD 70

BLAST of IVF0011253 vs. ExPASy TrEMBL
Match: A0A1S3CM64 (uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-09
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 11  SRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGT 64
           ++LK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+QTIYP DDE+EL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

BLAST of IVF0011253 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVR+  RCLGSR+KH+KSNKDD I+I+D              +   T+Y  DDE ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 57

Query: 61 TGTQNVVYQD 71
          T TQ ++Y++
Sbjct: 61 TCTQIMLYEE 57

BLAST of IVF0011253 vs. ExPASy TrEMBL
Match: A0A5D3E406 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00510 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 3   RRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTG 62
           +RR    G    H+     DL  +  N  +E+RYEE I Y+PLQ +YP+D E ELRGPTG
Sbjct: 118 KRRGEASGREFLHLLREMPDLSSL--NRADEERYEEAINYEPLQAVYPNDGEHELRGPTG 177

Query: 63  TQNVVYQD 71
           TQ V+Y++
Sbjct: 178 TQIVLYEE 183

BLAST of IVF0011253 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 1.79e-27
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVRR ERCLG +LK IKSNKDD I+I DNTEEE RYEEPIQY+PLQTIY DDDEQELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQNVVYQ 69
          T T  VVYQ
Sbjct: 61 TDTLIVVYQ 69

BLAST of IVF0011253 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (250), Expect = 1.34e-23
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVRR ERCLGSRLK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+Q IYP DDE+EL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQNVVYQD 70
          TGTQ VVY D
Sbjct: 61 TGTQIVVYDD 70

BLAST of IVF0011253 vs. NCBI nr
Match: XP_008464749.1 (PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 2.15e-12
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 11  SRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGT 63
           ++LK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+QTIYP DDE+EL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

BLAST of IVF0011253 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 5.09e-10
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVR+  RCLGSR+KH+KSNKDD I+I+D              +   T+Y  DDE ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 57

Query: 61 TGTQNVVYQD 70
          T TQ ++Y++
Sbjct: 61 TCTQIMLYEE 57

BLAST of IVF0011253 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.56e-09
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 28 DNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGTQNVVYQD 70
          D+ E+E+RYEE I Y+PLQ +YP+D E ELRGPTGTQ V+Y++
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEE 45

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TIM33.1e-2080.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3X19.9e-1971.43Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A1S3CM645.5e-0962.26uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7VKG55.1e-0748.57Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5D3E4065.1e-0747.06Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0043162.11.79e-2781.16uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
TYK30586.11.34e-2371.43protein Ycf2-like [Cucumis melo var. makuwa][more]
XP_008464749.12.15e-1262.26PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo][more]
KAA0066916.15.09e-1048.57Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
KAA0035692.11.56e-0962.79Cell division protein ftsH [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011253.1IVF0011253.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division