IVF0011250 (gene) Melon (IVF77) v1

Overview
NameIVF0011250
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr06: 18671595 .. 18671825 (+)
RNA-Seq ExpressionIVF0011250
SyntenyIVF0011250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCATTGAGGAAGTTGGCGAGAAAAGTCTCCCATCACCACCTAAATCAACTTCAAAAGCCTCAATGCGAAAAGATAAGTTGAAAAAGTCAGTGAGAGAAGAAGAAGATGAAGAAGTTGATAAGGATTATATCTTTATGTTTATGGATCACTACATCTGTAAACCAATGGAGAAAGGAATTGAAGATATAATCAAGTGTCAGAGCAACTTGGAAAAAATCCATTATTGA

mRNA sequence

ATGCTCATTGAGGAAGTTGGCGAGAAAAGTCTCCCATCACCACCTAAATCAACTTCAAAAGCCTCAATGCGAAAAGATAAGTTGAAAAAGTCAGTGAGAGAAGAAGAAGATGAAGAAGTTGATAAGGATTATATCTTTATGTTTATGGATCACTACATCTGTAAACCAATGGAGAAAGGAATTGAAGATATAATCAAGTGTCAGAGCAACTTGGAAAAAATCCATTATTGA

Coding sequence (CDS)

ATGCTCATTGAGGAAGTTGGCGAGAAAAGTCTCCCATCACCACCTAAATCAACTTCAAAAGCCTCAATGCGAAAAGATAAGTTGAAAAAGTCAGTGAGAGAAGAAGAAGATGAAGAAGTTGATAAGGATTATATCTTTATGTTTATGGATCACTACATCTGTAAACCAATGGAGAAAGGAATTGAAGATATAATCAAGTGTCAGAGCAACTTGGAAAAAATCCATTATTGA

Protein sequence

MLIEEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKGIEDIIKCQSNLEKIHY
Homology
BLAST of IVF0011250 vs. ExPASy TrEMBL
Match: A0A5D3DJV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00410 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1   MLIEEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKG 60
           +L+ +VG+KSLPSP KST KAS RKDKLKKSVR++E+EEVD DYIF FM+HYI KPM+KG
Sbjct: 41  ILLNKVGKKSLPSPSKSTLKASTRKDKLKKSVRKKEEEEVDGDYIFKFMNHYIYKPMDKG 100

Query: 61  IEDII 66
            ED+I
Sbjct: 101 FEDVI 105

BLAST of IVF0011250 vs. ExPASy TrEMBL
Match: A0A5A7UCY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00370 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 1   MLIEEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKG 60
           +L + V EKSLPSP K T  AS +KD+LKK+VRE+E EE D+DYIF FMDHYI KPMEKG
Sbjct: 38  ILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEFDEDYIFEFMDHYIRKPMEKG 97

Query: 61  IEDIIKC 68
           I+DII+C
Sbjct: 98  IDDIIQC 104

BLAST of IVF0011250 vs. ExPASy TrEMBL
Match: A0A5D3CJ32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001300 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.6e-14
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 4  EEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKGIED 63
          E+VGEKSLPS  KS  +AS + DKLK++VREE  EEV  DY+FMF+D YICKP+E+G +D
Sbjct: 18 EDVGEKSLPSSGKSIPEASTQLDKLKEAVREE--EEVSADYVFMFIDEYICKPLERGFKD 77

Query: 64 IIKCQSNLEKI 75
          I +C+SNL+++
Sbjct: 78 IFQCKSNLQEM 86

BLAST of IVF0011250 vs. ExPASy TrEMBL
Match: A0A5A7V5X0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001410 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0

Query: 2   LIEEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKGI 61
           L E+V EKSLPSPPK   +  +R +KLK++++EE  EEVD +Y+F FMD +ICKP+E+G 
Sbjct: 129 LPEDVSEKSLPSPPKPILEVVVRLEKLKEAMKEE--EEVDANYVFKFMDEFICKPLERGF 188

Query: 62  EDIIKCQSNLEKI 75
           EDI +CQSNL+++
Sbjct: 189 EDIFQCQSNLQEM 199

BLAST of IVF0011250 vs. ExPASy TrEMBL
Match: A0A5A7SRQ1 (Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 0

Query: 4   EEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKGIED 63
           E   +KSLPSPPKST++  +R  KLK++ RE+E +EVD+ +IF FMDHYIC P+EKG ED
Sbjct: 159 ERAPKKSLPSPPKSTTETFIRTYKLKEAEREDE-KEVDEYFIFKFMDHYICMPVEKGFED 218

Query: 64  IIKCQSNLEKIHY 77
           +IKCQSN +++ +
Sbjct: 219 VIKCQSNHKEMPF 230

BLAST of IVF0011250 vs. NCBI nr
Match: KAA0051346.1 (hypothetical protein E6C27_scaffold55G00680 [Cucumis melo var. makuwa] >TYK23867.1 hypothetical protein E5676_scaffold419G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.66e-23
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1   MLIEEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKG 60
           +L+ +VG+KSLPSP KST KAS RKDKLKKSVR++E+EEVD DYIF FM+HYI KPM+KG
Sbjct: 41  ILLNKVGKKSLPSPSKSTLKASTRKDKLKKSVRKKEEEEVDGDYIFKFMNHYIYKPMDKG 100

Query: 61  IEDII 65
            ED+I
Sbjct: 101 FEDVI 105

BLAST of IVF0011250 vs. NCBI nr
Match: KAA0052076.1 (hypothetical protein E6C27_scaffold578G00490 [Cucumis melo var. makuwa] >TYK00691.1 hypothetical protein E5676_scaffold1371G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 9.64e-21
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 1   MLIEEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKG 60
           +L + V EKSLPSP K T  AS +KD+LKK+VRE+E EE D+DYIF FMDHYI KPMEKG
Sbjct: 38  ILSKVVVEKSLPSPSKLTPNASTQKDQLKKAVREKEREEFDEDYIFEFMDHYIRKPMEKG 97

Query: 61  IEDIIKC 67
           I+DII+C
Sbjct: 98  IDDIIQC 104

BLAST of IVF0011250 vs. NCBI nr
Match: TYK11947.1 (hypothetical protein E5676_scaffold177G001300 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 1.68e-20
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 4  EEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKGIED 63
          E+VGEKSLPS  KS  +AS + DKLK++VREEE  EV  DY+FMF+D YICKP+E+G +D
Sbjct: 18 EDVGEKSLPSSGKSIPEASTQLDKLKEAVREEE--EVSADYVFMFIDEYICKPLERGFKD 77

Query: 64 IIKCQSNLEKI 74
          I +C+SNL+++
Sbjct: 78 IFQCKSNLQEM 86

BLAST of IVF0011250 vs. NCBI nr
Match: KAA0062630.1 (hypothetical protein E6C27_scaffold79G001410 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.70e-18
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0

Query: 2   LIEEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKGI 61
           L E+V EKSLPSPPK   +  +R +KLK++++EEE  EVD +Y+F FMD +ICKP+E+G 
Sbjct: 129 LPEDVSEKSLPSPPKPILEVVVRLEKLKEAMKEEE--EVDANYVFKFMDEFICKPLERGF 188

Query: 62  EDIIKCQSNLEKI 74
           EDI +CQSNL+++
Sbjct: 189 EDIFQCQSNLQEM 199

BLAST of IVF0011250 vs. NCBI nr
Match: KAA0032726.1 (drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.98e-17
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 0

Query: 4   EEVGEKSLPSPPKSTSKASMRKDKLKKSVREEEDEEVDKDYIFMFMDHYICKPMEKGIED 63
           E   +KSLPSPPKST++  +R  KLK++ RE+E +EVD+ +IF FMDHYIC P+EKG ED
Sbjct: 159 ERAPKKSLPSPPKSTTETFIRTYKLKEAEREDE-KEVDEYFIFKFMDHYICMPVEKGFED 218

Query: 64  IIKCQSNLEKIHY 76
           +IKCQSN +++ +
Sbjct: 219 VIKCQSNHKEMPF 230

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJV11.7e-1672.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UCY81.2e-1468.66Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CJ323.6e-1460.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V5X01.4e-1356.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SRQ12.3e-1357.53Drebrin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00660 P... [more]
Match NameE-valueIdentityDescription
KAA0051346.13.66e-2372.31hypothetical protein E6C27_scaffold55G00680 [Cucumis melo var. makuwa] >TYK23867... [more]
KAA0052076.19.64e-2168.66hypothetical protein E6C27_scaffold578G00490 [Cucumis melo var. makuwa] >TYK0069... [more]
TYK11947.11.68e-2060.56hypothetical protein E5676_scaffold177G001300 [Cucumis melo var. makuwa][more]
KAA0062630.11.70e-1856.16hypothetical protein E6C27_scaffold79G001410 [Cucumis melo var. makuwa][more]
KAA0032726.11.98e-1757.53drebrin-like [Cucumis melo var. makuwa] >TYJ98758.1 drebrin-like [Cucumis melo v... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011250.2IVF0011250.2mRNA