Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATTGGAGTAAAAGTGAACGTTGGAGAATTCATCTTCAATCATCTTCTGCGGCATGTTGATACTTTTGCTATCCATATTCCAATCTGCTTCCCGCGAATTCTAAGTGGCTTTATTCTGCCTCAGCAGTCAAACATTCTGACTCCTCTGGATACTGTTGGTTCAGCACCTCGGGTTATACCCTTAGTATGCGCTTGTTTCAAGGGGCTCACTTTCCTAATGTTGCTGCTGAGTTTGACAATGCTCCAGGTGGAACCAGTACTTCTGCTGCTTCGCAACCTGCGGTTGGTCATCCTATGACTCTCTCTGTGTCACTTGCCAATCGCCTACTGCAAGCTCTAATTGATGAATCTCGTGCTCTGACCCGTCAAATAAGTGAGCTAACCGATCGACGCACTGTATTGGATGCTGTCATCTGTGACCTCCGACGTGCAGCTTCTGGAACTACCCCTCCTCCGTTTGATTAA
mRNA sequence
ATGGGCATTGGAGTAAAAGTGAACGTTGGAGAATTCATCTTCAATCATCTTCTGCGGCATGTTGATACTTTTGCTATCCATATTCCAATCTGCTTCCCGCGAATTCTAAGTGGCTTTATTCTGCCTCAGCAGTCAAACATTCTGACTCCTCTGGATACTGTTGGTTCAGCACCTCGGGTTATACCCTTATTTGACAATGCTCCAGGTGGAACCAGTACTTCTGCTGCTTCGCAACCTGCGGTTGGTCATCCTATGACTCTCTCTGTGTCACTTGCCAATCGCCTACTGCAAGCTCTAATTGATGAATCTCGTGCTCTGACCCGTCAAATAAGTGAGCTAACCGATCGACGCACTGTATTGGATGCTGTCATCTGTGACCTCCGACGTGCAGCTTCTGGAACTACCCCTCCTCCGTTTGATTAA
Coding sequence (CDS)
ATGGGCATTGGAGTAAAAGTGAACGTTGGAGAATTCATCTTCAATCATCTTCTGCGGCATGTTGATACTTTTGCTATCCATATTCCAATCTGCTTCCCGCGAATTCTAAGTGGCTTTATTCTGCCTCAGCAGTCAAACATTCTGACTCCTCTGGATACTGTTGGTTCAGCACCTCGGGTTATACCCTTATTTGACAATGCTCCAGGTGGAACCAGTACTTCTGCTGCTTCGCAACCTGCGGTTGGTCATCCTATGACTCTCTCTGTGTCACTTGCCAATCGCCTACTGCAAGCTCTAATTGATGAATCTCGTGCTCTGACCCGTCAAATAAGTGAGCTAACCGATCGACGCACTGTATTGGATGCTGTCATCTGTGACCTCCGACGTGCAGCTTCTGGAACTACCCCTCCTCCGTTTGATTAA
Protein sequence
MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRVIPLFDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESRALTRQISELTDRRTVLDAVICDLRRAASGTTPPPFD
Homology
BLAST of IVF0011235 vs. ExPASy TrEMBL
Match:
A0A5A7UXI2 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001560 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 3.2e-53
Identity = 120/156 (76.92%), Postives = 127/156 (81.41%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G VKVNVGEFIFNHLLR+VDTFAIHIPICFPRILSGFIL QQS I+TPLD VGSAP+V
Sbjct: 545 VGTRVKVNVGEFIFNHLLRNVDTFAIHIPICFPRILSGFILAQQSTIMTPLDIVGSAPQV 604
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNA GGTSTSAASQPAVGHP+TLSVSLANRLLQALI ES
Sbjct: 605 IPLSMRLFQGTHFPDVAVEFDNALGGTSTSAASQPAVGHPVTLSVSLANRLLQALIAESH 664
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPPFD 141
ALT QI+ELT+RRTVLDAVI DLR AA GTTPPP D
Sbjct: 665 ALTHQINELTNRRTVLDAVIRDLRCAAFGTTPPPSD 700
BLAST of IVF0011235 vs. ExPASy TrEMBL
Match:
A0A5A7SIG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00600 PE=4 SV=1)
HSP 1 Score: 211.1 bits (536), Expect = 3.0e-51
Identity = 115/154 (74.68%), Postives = 122/154 (79.22%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G GVKVNVGEFIFNHLLRHVDTF IHIPICFP+ILSGF+L QQS ILTPL+TVGSAPRV
Sbjct: 148 VGTGVKVNVGEFIFNHLLRHVDTFGIHIPICFPQILSGFLLAQQSTILTPLNTVGSAPRV 207
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNA TS AASQPAVGH +TLSVSLANRL QALI ESR
Sbjct: 208 IPLNMRLFQGAHIPNVASEFDNAASKTSNPAASQPAVGHALTLSVSLANRLFQALIVESR 267
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPP 139
ALT QISEL+DRRTVLDAVI DL+RA SG TPPP
Sbjct: 268 ALTHQISELSDRRTVLDAVIRDLQRATSGATPPP 301
BLAST of IVF0011235 vs. ExPASy TrEMBL
Match:
A0A1S3BUG4 (uncharacterized protein LOC103493432 OS=Cucumis melo OX=3656 GN=LOC103493432 PE=4 SV=1)
HSP 1 Score: 210.7 bits (535), Expect = 4.0e-51
Identity = 115/154 (74.68%), Postives = 123/154 (79.87%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G GVKVNVGEFIFNHLLRHVDTF IHIPICFP+ILSGF+L QQS ILTPL+TVGSAPRV
Sbjct: 117 VGTGVKVNVGEFIFNHLLRHVDTFGIHIPICFPQILSGFLLAQQSTILTPLNTVGSAPRV 176
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNA TST AASQPAVGH +TLSVSLANRLLQALI ESR
Sbjct: 177 IPLNMRLFQGAHIPNVASEFDNAASKTSTPAASQPAVGHALTLSVSLANRLLQALIVESR 236
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPP 139
ALT +ISEL+DRRTVLDAVI DL+RA G TPPP
Sbjct: 237 ALTHRISELSDRRTVLDAVIRDLQRATFGATPPP 270
BLAST of IVF0011235 vs. ExPASy TrEMBL
Match:
A0A5D3E3G2 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00830 PE=4 SV=1)
HSP 1 Score: 203.4 bits (516), Expect = 6.3e-49
Identity = 110/156 (70.51%), Postives = 121/156 (77.56%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G GVKVNVGEFIFNHLLRHVDTF+IHI ICF RILSGF+L QQS ILT LDT+G+APRV
Sbjct: 924 VGTGVKVNVGEFIFNHLLRHVDTFSIHILICFARILSGFLLAQQSTILTLLDTIGTAPRV 983
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNAP GTS AA+ P VGHP+ VSLANRLLQALI ESR
Sbjct: 984 IPLSMRLFQGSHIPNVAAEFDNAPEGTSVVAATHPIVGHPLIHFVSLANRLLQALIAESR 1043
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPPFD 141
+LTRQIS+LTDRRTVLDA++ D RRAASG TPPP D
Sbjct: 1044 SLTRQISDLTDRRTVLDAILRDFRRAASGCTPPPSD 1079
BLAST of IVF0011235 vs. ExPASy TrEMBL
Match:
A0A5A7SWY8 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00540 PE=4 SV=1)
HSP 1 Score: 203.4 bits (516), Expect = 6.3e-49
Identity = 110/156 (70.51%), Postives = 121/156 (77.56%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G GVKVNVGEFIFNHLLRHVDTF+IHI ICF RILSGF+L QQS ILT LDT+G+APRV
Sbjct: 1250 VGTGVKVNVGEFIFNHLLRHVDTFSIHILICFARILSGFLLAQQSTILTLLDTIGTAPRV 1309
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNAP GTS AA+ P VGHP+ VSLANRLLQALI ESR
Sbjct: 1310 IPLSMRLFQGSHIPNVAVEFDNAPEGTSVVAATHPIVGHPLIHFVSLANRLLQALIAESR 1369
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPPFD 141
+LTRQIS+LTDRRTVLDA++ D RRAASG TPPP D
Sbjct: 1370 SLTRQISDLTDRRTVLDAILRDFRRAASGCTPPPSD 1405
BLAST of IVF0011235 vs. NCBI nr
Match:
XP_008452370.1 (PREDICTED: uncharacterized protein LOC103493432 [Cucumis melo])
HSP 1 Score: 214 bits (545), Expect = 4.27e-67
Identity = 115/154 (74.68%), Postives = 123/154 (79.87%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G GVKVNVGEFIFNHLLRHVDTF IHIPICFP+ILSGF+L QQS ILTPL+TVGSAPRV
Sbjct: 117 VGTGVKVNVGEFIFNHLLRHVDTFGIHIPICFPQILSGFLLAQQSTILTPLNTVGSAPRV 176
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNA TST AASQPAVGH +TLSVSLANRLLQALI ESR
Sbjct: 177 IPLNMRLFQGAHIPNVASEFDNAASKTSTPAASQPAVGHALTLSVSLANRLLQALIVESR 236
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPP 138
ALT +ISEL+DRRTVLDAVI DL+RA G TPPP
Sbjct: 237 ALTHRISELSDRRTVLDAVIRDLQRATFGATPPP 270
BLAST of IVF0011235 vs. NCBI nr
Match:
KAA0025424.1 (uncharacterized protein E6C27_scaffold417G00080 [Cucumis melo var. makuwa] >TYK04758.1 uncharacterized protein E5676_scaffold68G00600 [Cucumis melo var. makuwa])
HSP 1 Score: 214 bits (546), Expect = 7.68e-67
Identity = 115/154 (74.68%), Postives = 122/154 (79.22%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G GVKVNVGEFIFNHLLRHVDTF IHIPICFP+ILSGF+L QQS ILTPL+TVGSAPRV
Sbjct: 148 VGTGVKVNVGEFIFNHLLRHVDTFGIHIPICFPQILSGFLLAQQSTILTPLNTVGSAPRV 207
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNA TS AASQPAVGH +TLSVSLANRL QALI ESR
Sbjct: 208 IPLNMRLFQGAHIPNVASEFDNAASKTSNPAASQPAVGHALTLSVSLANRLFQALIVESR 267
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPP 138
ALT QISEL+DRRTVLDAVI DL+RA SG TPPP
Sbjct: 268 ALTHQISELSDRRTVLDAVIRDLQRATSGATPPP 301
BLAST of IVF0011235 vs. NCBI nr
Match:
KAA0059938.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK24884.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 221 bits (563), Expect = 1.96e-65
Identity = 120/156 (76.92%), Postives = 127/156 (81.41%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G VKVNVGEFIFNHLLR+VDTFAIHIPICFPRILSGFIL QQS I+TPLD VGSAP+V
Sbjct: 545 VGTRVKVNVGEFIFNHLLRNVDTFAIHIPICFPRILSGFILAQQSTIMTPLDIVGSAPQV 604
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNA GGTSTSAASQPAVGHP+TLSVSLANRLLQALI ES
Sbjct: 605 IPLSMRLFQGTHFPDVAVEFDNALGGTSTSAASQPAVGHPVTLSVSLANRLLQALIAESH 664
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPPFD 140
ALT QI+ELT+RRTVLDAVI DLR AA GTTPPP D
Sbjct: 665 ALTHQINELTNRRTVLDAVIRDLRCAAFGTTPPPSD 700
BLAST of IVF0011235 vs. NCBI nr
Match:
TYK29845.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 207 bits (526), Expect = 8.13e-59
Identity = 110/156 (70.51%), Postives = 121/156 (77.56%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G GVKVNVGEFIFNHLLRHVDTF+IHI ICF RILSGF+L QQS ILT LDT+G+APRV
Sbjct: 924 VGTGVKVNVGEFIFNHLLRHVDTFSIHILICFARILSGFLLAQQSTILTLLDTIGTAPRV 983
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNAP GTS AA+ P VGHP+ VSLANRLLQALI ESR
Sbjct: 984 IPLSMRLFQGSHIPNVAAEFDNAPEGTSVVAATHPIVGHPLIHFVSLANRLLQALIAESR 1043
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPPFD 140
+LTRQIS+LTDRRTVLDA++ D RRAASG TPPP D
Sbjct: 1044 SLTRQISDLTDRRTVLDAILRDFRRAASGCTPPPSD 1079
BLAST of IVF0011235 vs. NCBI nr
Match:
KAA0035772.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 207 bits (526), Expect = 1.02e-58
Identity = 110/156 (70.51%), Postives = 121/156 (77.56%), Query Frame = 0
Query: 1 MGIGVKVNVGEFIFNHLLRHVDTFAIHIPICFPRILSGFILPQQSNILTPLDTVGSAPRV 60
+G GVKVNVGEFIFNHLLRHVDTF+IHI ICF RILSGF+L QQS ILT LDT+G+APRV
Sbjct: 1250 VGTGVKVNVGEFIFNHLLRHVDTFSIHILICFARILSGFLLAQQSTILTLLDTIGTAPRV 1309
Query: 61 IPL----------------FDNAPGGTSTSAASQPAVGHPMTLSVSLANRLLQALIDESR 120
IPL FDNAP GTS AA+ P VGHP+ VSLANRLLQALI ESR
Sbjct: 1310 IPLSMRLFQGSHIPNVAVEFDNAPEGTSVVAATHPIVGHPLIHFVSLANRLLQALIAESR 1369
Query: 121 ALTRQISELTDRRTVLDAVICDLRRAASGTTPPPFD 140
+LTRQIS+LTDRRTVLDA++ D RRAASG TPPP D
Sbjct: 1370 SLTRQISDLTDRRTVLDAILRDFRRAASGCTPPPSD 1405
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UXI2 | 3.2e-53 | 76.92 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5A7SIG0 | 3.0e-51 | 74.68 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3BUG4 | 4.0e-51 | 74.68 | uncharacterized protein LOC103493432 OS=Cucumis melo OX=3656 GN=LOC103493432 PE=... | [more] |
| A0A5D3E3G2 | 6.3e-49 | 70.51 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5A7SWY8 | 6.3e-49 | 70.51 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008452370.1 | 4.27e-67 | 74.68 | PREDICTED: uncharacterized protein LOC103493432 [Cucumis melo] | [more] |
| KAA0025424.1 | 7.68e-67 | 74.68 | uncharacterized protein E6C27_scaffold417G00080 [Cucumis melo var. makuwa] >TYK0... | [more] |
| KAA0059938.1 | 1.96e-65 | 76.92 | flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK24884.1 flocculat... | [more] |
| TYK29845.1 | 8.13e-59 | 70.51 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
| KAA0035772.1 | 1.02e-58 | 70.51 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
