IVF0011196 (gene) Melon (IVF77) v1

Overview
NameIVF0011196
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr06: 7761824 .. 7762264 (+)
RNA-Seq ExpressionIVF0011196
SyntenyIVF0011196
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAATTCTTCCCGTCTATCAAAAATGAGAGAAGAGAGCAGGACCTAATGCTTTTCAAGCAAAGAAATAAAGAAAATATGCACGAAGCGTGGAGTAAATTTAAACGAATGGTGAAGTCATGCCTCCACAATGGCACACCTAAATGTATCTTGATGGAGGTGTTCTATTTTGGGCTAAGCAAGAATACACAGTAGACTTCTGATGTTGTGTTTGTAGGAGGGATGTTGAAGAGTTCATACAACCAGATAAAGACAACGCTAGACTCTATAACCAACAATAGCCAAGAATGAAGTGATAATCGCTTTGGATCGCGCCAAGGAGAAAGAGAAAAAATTAAAGATGGAATAGATAGAAATGCAATGGTGACATTGCAAGGACAATTAACTGTAATGAACAAATTGTTGCAATCAATGACTTTAATGCCAGTTGATGTGTAA

mRNA sequence

ATGAAGAAATTCTTCCCGTCTATCAAAAATGAGAGAAGAGAGCAGGACCTAATGCTTTTCAAGCAAAGAAATAAAGAAAATATGCACGAAGCGTGGAGTAAATTTAAACGAATGGTGAAGTCATGCCTCCACAATGGCACACCTAAATGTATCTTGATGGAGACTTCTGATGTTGTGTTTGTAGGAGGGATGTTGAAGAGTTCATACAACCAGATAAAGACAACGCTAGACTCTATAACCAACAATAGAGAAAGAGAAAAAATTAAAGATGGAATAGATAGAAATGCAATGGTGACATTGCAAGGACAATTAACTGTAATGAACAAATTGTTGCAATCAATGACTTTAATGCCAGTTGATGTGTAA

Coding sequence (CDS)

ATGAAGAAATTCTTCCCGTCTATCAAAAATGAGAGAAGAGAGCAGGACCTAATGCTTTTCAAGCAAAGAAATAAAGAAAATATGCACGAAGCGTGGAGTAAATTTAAACGAATGGTGAAGTCATGCCTCCACAATGGCACACCTAAATGTATCTTGATGGAGACTTCTGATGTTGTGTTTGTAGGAGGGATGTTGAAGAGTTCATACAACCAGATAAAGACAACGCTAGACTCTATAACCAACAATAGAGAAAGAGAAAAAATTAAAGATGGAATAGATAGAAATGCAATGGTGACATTGCAAGGACAATTAACTGTAATGAACAAATTGTTGCAATCAATGACTTTAATGCCAGTTGATGTGTAA

Protein sequence

MKKFFPSIKNERREQDLMLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILMETSDVVFVGGMLKSSYNQIKTTLDSITNNREREKIKDGIDRNAMVTLQGQLTVMNKLLQSMTLMPVDV
Homology
[Close]
BLAST of IVF0011196 vs. ExPASy TrEMBL
Match: A0A5A7TUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00450 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.5e-25
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 0 

Query: 1   MKKFFPSIKNERREQDLMLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILME------ 60
           MKKFF  I+N RR QDL +F+ R++EN+++AWS  KR+VK+CLH+G  KC+LME      
Sbjct: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60

Query: 61  ------TSDVVFVGGMLKSSYNQIKTTLDSITNNRE----------------REKIKDGI 112
                 T DVVFVGG+L++SYNQ KT LD++ +N +                R +  +G+
Sbjct: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGM 120

[Close]
BLAST of IVF0011196 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 0 

Query: 18  MLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILMET------------SDVVFVGGML 77
           M+FKQR+KENMH+ WS+FKR+VK+C  +G P+C+ ME              + +FVGGML
Sbjct: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 78  KSSYNQIKTTLDSITNN-----------REREKIKDGIDRNAMVTLQGQLTVMNKLLQSM 121
           +SSYNQIK TLDS++NN           R R + K+G+D++ +V LQGQ+  MN LLQSM
Sbjct: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120

[Close]
BLAST of IVF0011196 vs. ExPASy TrEMBL
Match: A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.1e-20
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 1   MKKFFPSIKNERREQDLMLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILME------ 60
           MKKFFP+IK  +R QDL+LFKQR+++N+H+AWS FKRMVK+CLH+G  K +LME      
Sbjct: 81  MKKFFPTIKIAKRRQDLILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFYFGL 140

Query: 61  ------TSDVVFVGGMLKSSYNQIKTTLDSITNNRE 85
                 ++D +F+GG+L+SSYNQIK  LDS+ NN +
Sbjct: 141 SKDTRQSADSLFIGGILRSSYNQIKAMLDSMANNSQ 176

[Close]
BLAST of IVF0011196 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.5e-17
Identity = 56/135 (41.48%), Postives = 82/135 (60.74%), Query Frame = 0 

Query: 18  MLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILME------------TSDVVFVGGML 77
           M F+QR++EN+ + W +FKRM+K C H+  P+C+LME            ++++VF GGML
Sbjct: 1   MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60

Query: 78  KSSYNQIKTTLDSITNNRE-------------------REKIKDGIDRNAMVTLQGQLTV 122
           +SSYNQIK  LD++ +N +                   R +I+DGID + MV LQGQ+  
Sbjct: 61  RSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIE 120

[Close]
BLAST of IVF0011196 vs. ExPASy TrEMBL
Match: A0A5D3DR17 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00450 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.7e-16
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0 

Query: 1   MKKFFPSIKNERREQDLMLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILME------ 60
           +KKFF  IKN RR QD MLFKQR  EN+H+AWS+FKR++K CL  G P+ +LME      
Sbjct: 125 VKKFFLLIKNVRRRQDPMLFKQREGENLHDAWSRFKRIMKFCLPKGIPEYVLMEVFYFKL 184

Query: 61  ------TSDVVFVGGMLKSSYNQIKTTLDSITNNRE 85
                 T   VF GGMLKS YNQIK+ L+S+  N +
Sbjct: 185 SKDTQHTVGAVFAGGMLKSFYNQIKSMLNSMAGNSQ 220

[Close]
BLAST of IVF0011196 vs. NCBI nr
Match: KAA0046468.1 (hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ97743.1 hypothetical protein E5676_scaffold1251G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 2.79e-33
Identity = 69/139 (49.64%), Postives = 92/139 (66.19%), Query Frame = 0 

Query: 1   MKKFFPSIKNERREQDLMLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILME------ 60
           MKKFF  I+N RR QDL +F+ R++EN+++AWS  KR+VK+CLH+G  KC+LME      
Sbjct: 1   MKKFFLPIENARRRQDLKVFRHRDRENLNDAWSISKRLVKACLHHGISKCVLMEKFYFRL 60

Query: 61  ------TSDVVFVGGMLKSSYNQIKTTLDSITNNRE----------------REKIKDGI 111
                 T DVVFVGG+L++SYNQ KT LD++ +N +                R +  +G+
Sbjct: 61  SEDAQQTVDVVFVGGVLRNSYNQTKTMLDTMISNSQECRDDCISSQQENGENRGRTDEGM 120

[Close]
BLAST of IVF0011196 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 116 bits (291), Expect = 2.49e-30
Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 0 

Query: 18  MLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILMETS------------DVVFVGGML 77
           M+FKQR+KENMH+ WS+FKR+VK+C  +G P+C+ ME              + +FVGGML
Sbjct: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 78  KSSYNQIKTTLDSITNN-----------REREKIKDGIDRNAMVTLQGQLTVMNKLLQSM 120
           +SSYNQIK TLDS++NN           R R + K+G+D++ +V LQGQ+  MN LLQSM
Sbjct: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120

[Close]
BLAST of IVF0011196 vs. NCBI nr
Match: KAA0061983.1 (uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 5.31e-24
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 1   MKKFFPSIKNERREQDLMLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILME------ 60
           MKKFFP+IK  +R QDL+LFKQR+++N+H+AWS FKRMVK+CLH+G  K +LME      
Sbjct: 81  MKKFFPTIKIAKRRQDLILFKQRDRKNLHDAWSIFKRMVKACLHHGITKYVLMEGFYFGL 140

Query: 61  ------TSDVVFVGGMLKSSYNQIKTTLDSITNNRE 84
                 ++D +F+GG+L+SSYNQIK  LDS+ NN +
Sbjct: 141 SKDTRQSADSLFIGGILRSSYNQIKAMLDSMANNSQ 176

[Close]
BLAST of IVF0011196 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 4.09e-21
Identity = 56/135 (41.48%), Postives = 82/135 (60.74%), Query Frame = 0 

Query: 18  MLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILME------------TSDVVFVGGML 77
           M F+QR++EN+ + W +FKRM+K C H+  P+C+LME            ++++VF GGML
Sbjct: 1   MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60

Query: 78  KSSYNQIKTTLDSITNNRE-------------------REKIKDGIDRNAMVTLQGQLTV 121
           +SSYNQIK  LD++ +N +                   R +I+DGID + MV LQGQ+  
Sbjct: 61  RSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIE 120

[Close]
BLAST of IVF0011196 vs. NCBI nr
Match: KAA0059690.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK26127.1 Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 5.82e-20
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 0 

Query: 1   MKKFFPSIKNERREQDLMLFKQRNKENMHEAWSKFKRMVKSCLHNGTPKCILME------ 60
           +KKFF  IKN RR QD MLFKQR  EN+H+AWS+FKR++K CL  G P+ +LME      
Sbjct: 125 VKKFFLLIKNVRRRQDPMLFKQREGENLHDAWSRFKRIMKFCLPKGIPEYVLMEVFYFKL 184

Query: 61  ------TSDVVFVGGMLKSSYNQIKTTLDSITNNRE 84
                 T   VF GGMLKS YNQIK+ L+S+  N +
Sbjct: 185 SKDTQHTVGAVFAGGMLKSFYNQIKSMLNSMAGNSQ 220

The following BLAST results are available for this feature:
BLAST of IVF0011196 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011196 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TUE15.5e-2549.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6F91.2e-2249.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
A0A5A7V1F34.1e-2055.21Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CC265.5e-1741.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DR174.7e-1653.13Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of IVF0011196 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046468.12.79e-3349.64hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa] >TYJ9774... [more]
KGN44484.12.49e-3049.21hypothetical protein Csa_015918 [Cucumis sativus][more]
KAA0061983.15.31e-2455.21uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa][more]
KAA0048713.14.09e-2141.48hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... [more]
KAA0059690.15.82e-2053.13Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK26127.1 Retrotranspos... [more]
BLAST of IVF0011196 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011196.2IVF0011196.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008233 peptidase activity